mRNA_C-tenellus_contig9854.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9854.2.1
Unique NamemRNA_C-tenellus_contig9854.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: A0A8K0DPC0_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DPC0_9ROSA)

HSP 1 Score: 55.8 bits (133), Expect = 6.830e-6
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            +++ L K     +F+E +D   +PDY     HPM F  V   +     SG TY +  +F +D+ L+ SNA++YNSPD
Sbjct:  212 ILERLQKKDTYGVFSEPVDPKELPDYHEIIEHPMDFGTVRKKV-----SGGTYANLEQFEKDVFLICSNAMQYNSPD 283
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BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: A0A8B8LGE1_ABRPR (uncharacterized protein LOC113864634 isoform X1 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LGE1_ABRPR)

HSP 1 Score: 53.5 bits (127), Expect = 4.080e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            ++  L K     +F+E +D   +PDY     HPM F  V   L      G  Y +  +F +D+ L+ SNA++YNSPD
Sbjct:  128 ILDRLQKKDTHGVFSEPVDPEELPDYHDIIKHPMDFGTVRKKL-----DGAVYTNLEQFEKDVFLICSNAMQYNSPD 199
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BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: UPI0012639324 (uncharacterized protein LOC116112676 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012639324)

HSP 1 Score: 53.5 bits (127), Expect = 4.140e-5
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            V+  L K     +F+E +D+  +PDY     HPM F  +   L      G +Y +  +F +D+ L+ SNA++YNSPD
Sbjct:  164 VLDRLQKKDTYGVFSEPVDSEELPDYHEIIAHPMDFATLRKKL-----DGGSYTNLEQFEKDVFLICSNAMQYNSPD 235
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BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: A0A067KY78_JATCU (Bromo domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KY78_JATCU)

HSP 1 Score: 53.5 bits (127), Expect = 4.150e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            ++  L K     +F+E +D   +PDY     HPM F  V   L      G  Y+   +F +D+ L+ SNA++YNSPD
Sbjct:  183 ILDRLQKKDTYAVFSEPVDPEELPDYHDIIEHPMDFSTVRKKL-----DGGVYVSLEQFEKDVFLICSNAMQYNSPD 254
[Close]
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: A0A6P8D9U8_PUNGR (homeotic protein female sterile-like isoform X2 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A6P8D9U8_PUNGR)

HSP 1 Score: 53.1 bits (126), Expect = 4.980e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            ++  L K     +F+E +D   +PDY     HPM F  V   L D       Y +  +F +D+ L+ SNA++YNSPD
Sbjct:  177 ILDRLQKKDTHGVFSEPVDPEELPDYHDIIKHPMDFGTVRKKLEDG-----AYANLEQFEKDVFLICSNAMQYNSPD 248
[Close]
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: A0A2I0JHT3_PUNGR (Bromo domain-containing protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JHT3_PUNGR)

HSP 1 Score: 53.1 bits (126), Expect = 5.580e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            ++  L K     +F+E +D   +PDY     HPM F  V   L D       Y +  +F +D+ L+ SNA++YNSPD
Sbjct:  177 ILDRLQKKDTHGVFSEPVDPEELPDYHDIIKHPMDFGTVRKKLEDG-----AYANLEQFEKDVFLICSNAMQYNSPD 248
[Close]
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: A0A2C9VVQ2_MANES (Bromo domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VVQ2_MANES)

HSP 1 Score: 53.1 bits (126), Expect = 5.610e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            ++  L K     +F+E +D   +PDY     HPM F  V   L      G  Y +  +F +D+ L+ SNA++YNSPD
Sbjct:  173 ILDRLQKKDTYGVFSEPVDPEELPDYHDIIEHPMDFSTVRKKL-----DGGAYANLEQFEKDVFLICSNAMQYNSPD 244
[Close]
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: UPI000B8D0F8B (bromodomain-containing protein DDB_G0270170-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D0F8B)

HSP 1 Score: 53.1 bits (126), Expect = 5.630e-5
Identity = 28/77 (36.36%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            V+  L K     +F+E +D   +PDY     HPM F  V   L   D     Y +  +F +D+ L+ SNA++YNSPD
Sbjct:  189 VLDRLQKKDTYGVFSEPVDPEELPDYHDIIAHPMDFGTVRKKLDGGD-----YANLEQFEKDVFLICSNAMQYNSPD 260
[Close]
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: UPI001CC4AF85 (uncharacterized protein LOC122662232 isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC4AF85)

HSP 1 Score: 52.8 bits (125), Expect = 7.700e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  106 VMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPD 336
            ++  L K     +F++ +D   +PDY     HPM F  V   L      G  Y +  +F +D+ L+ SNA+RYNSPD
Sbjct:  205 ILDRLQKKDTYGVFSDPVDPNELPDYHEIIEHPMDFGTVRKKL-----DGGAYANLEQFEKDVFLICSNAMRYNSPD 276
[Close]
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Match: UPI00052265ED (ATPase family AAA domain-containing protein 2 n=1 Tax=Haliaeetus albicilla TaxID=8969 RepID=UPI00052265ED)

HSP 1 Score: 52.8 bits (125), Expect = 7.950e-5
Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:    4 PCRLNFAERNRERKMREALVSELKLLNTTGHAKTVMKNLCKNQKGKMFTEEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRLVISNALRYNSPDDP 342
            P +L   E  R  +  E  + EL++       + V   L  +++ + FT+ +D   +PDY +   HPM    V A +         YL   +F++DI L+ +NAL YNS  DP
Sbjct:  758 PLQLTEEEIRRLEEQEEDTLLELRIF-----LRDVTDRLVVDRRFRAFTKPVDPEEVPDYEAVIKHPMDLSTVVAKI-----DLHQYLTARDFLKDINLICTNALEYNSAKDP 860
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9854.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A8K0DPC0_9ROSA6.830e-636.36Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A8B8LGE1_ABRPR4.080e-535.06uncharacterized protein LOC113864634 isoform X1 n=... [more]
UPI00126393244.140e-535.06uncharacterized protein LOC116112676 n=1 Tax=Pista... [more]
A0A067KY78_JATCU4.150e-535.06Bromo domain-containing protein n=2 Tax=Jatropha c... [more]
A0A6P8D9U8_PUNGR4.980e-535.06homeotic protein female sterile-like isoform X2 n=... [more]
A0A2I0JHT3_PUNGR5.580e-535.06Bromo domain-containing protein n=3 Tax=Punica gra... [more]
A0A2C9VVQ2_MANES5.610e-535.06Bromo domain-containing protein n=1 Tax=Manihot es... [more]
UPI000B8D0F8B5.630e-536.36bromodomain-containing protein DDB_G0270170-like n... [more]
UPI001CC4AF857.700e-535.06uncharacterized protein LOC122662232 isoform X1 n=... [more]
UPI00052265ED7.950e-530.09ATPase family AAA domain-containing protein 2 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9854contigC-tenellus_contig9854:1447..3320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog29730.Gorai.009G158600.1
PFAMsBromodomain
Model size534
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.05e-06
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,37JNZ@33090|Viridiplantae,3G752@35493|Streptophyta
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-26_006510.1
DescriptionTranscription factor
Cds size534
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790204.6144323-CDS-C-tenellus_contig9854:1446..16201680790204.6144323-CDS-C-tenellus_contig9854:1446..1620Choristocarpus tenellus KU2346CDSC-tenellus_contig9854 1447..1620 -
1680790204.6281378-CDS-C-tenellus_contig9854:2342..25531680790204.6281378-CDS-C-tenellus_contig9854:2342..2553Choristocarpus tenellus KU2346CDSC-tenellus_contig9854 2343..2553 -
1680790204.6376119-CDS-C-tenellus_contig9854:3171..33201680790204.6376119-CDS-C-tenellus_contig9854:3171..3320Choristocarpus tenellus KU2346CDSC-tenellus_contig9854 3172..3320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9854.2.1prot_C-tenellus_contig9854.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9854 1447..3320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9854.2.1

>prot_C-tenellus_contig9854.2.1 ID=prot_C-tenellus_contig9854.2.1|Name=mRNA_C-tenellus_contig9854.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=178bp
RPCRLNFAERNRERKMREALVSELKLLNTTGHAKTVMKNLCKNQKGKMFT
EEIDTVMIPDYLSKCPHPMWFRKVEANLGDADDSGRTYLHHSEFIRDIRL
VISNALRYNSPDDPDNANDSYSVSYYSAAVYIEKEMEKMLAQTYTLNTLE
EVRRQEILSMLDEEKRMKDKEARQRIME
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mRNA from alignment at C-tenellus_contig9854:1447..3320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9854.2.1 ID=mRNA_C-tenellus_contig9854.2.1|Name=mRNA_C-tenellus_contig9854.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1874bp|location=Sequence derived from alignment at C-tenellus_contig9854:1447..3320- (Choristocarpus tenellus KU2346)
CGCCCATGCAGGCTGAACTTTGCAGAGCGCAATAGGGAACGCAAAATGAG
GGAGGCGTTGGTCTCTGAGCTGAAGCTTCTCAATACCACTGGCCACGCCA
AGACGGTTATGAAGAACCTTTGCAAGAATCAGAAGGGAAAGATGTTTACG
TGAGCTGGTTGCGTTTTTTTTTAATATCATGACGTAAGAGCTGTGGGAGA
TTTTGTTCCCCCTCACCCCTCATGGGTAGCTCTGCATCCATGGCACAATG
GTGTTTTGAGTACAATCTGGGGCTAGTGCTGCACATGGGTTAGGGTTAGG
GCTGGTACGATGATAGTTCATTTTTAAGTTTGACTCTAAGTATCTGTGGG
GAAGGTGGGGGATCTACACCAGGTTGTCAAACTTAAGTTGTCCATTTGGG
TCACGACCAGGAAAAGTGAACTGAAATTATCCATCCGATGCATGTAACCA
TAGACAGTCGCCACCCCGCCCCCCCCCCCCCCCCAGATACTTTGATCCTT
TTTGGTGGTTGAACTACTTGCCTCATACAAAGAGATTGGACAAATCTGGA
TAGTCCTTTTCTGTGGGAGTAAAATCGACCTCATCTGTATTCATATTTTA
ATTTTTTAGATACACACCGGTAGATACATTTGCTGTGAATGATTTTTTTT
TCCCATTTTTTTGTCCTGTATGTGCACATGCGCACGCCCTCCTGGTTTTT
CTGCCCCACCCCCACCAACCCCCAACCCCCCCCCTCTCTTATCCTATTGC
TCACTGTGCTTGTTTAGTGAGGAGATCGATACGGTCATGATACCAGACTA
TCTCTCTAAGTGTCCTCATCCCATGTGGTTCCGGAAAGTCGAGGCTAATC
TGGGTGATGCCGATGATAGTGGCCGAACTTACCTTCACCATTCTGAATTC
ATACGGGATATTCGGCTTGTCATTTCCAACGCCCTTCGCTACAACAGTCC
TGACGACCCAGATAATGCCAATGATTCTGTGAGTGCGAACGGAGGAGGAA
GGCGTTTGGTTCGGCAGTTACGGTTTTGGTTCTGAATGGATGTTTTTTTG
TTTCTCTTGGAGTGTGGACGTTTTCGGAGGATTTTGTGTGTGTATGTGGG
GGGGGGGGGGGTTAAGGTGGGGTCTTTGTCAATTCCTTTATTCAATAAGA
TTGTTGATGTATAGATTTGAGTACATAGATTTGTTTGTGTTTTGTATGGA
GTTGATGTTGGTATTAGTGTTGGTATTAGTACTGGCTGGTTGCTGCCTCC
TCTAGCATGAGAGAATTTTTTGGTTGTATGAGTGCTGGCTATGCAGGGGA
TGTCTGGAATTGTGGTTTGTACAGTTTTGGTTTGATGGGAGGTTGAGATT
CATCAACCAAAACGCCTGTTGTGTTGTTTTGCAGTGATGGCAGTTCTTGT
GTTGAACTGTTGTAAGTGCTAGCTGTGTGTTGGACTGTGGTTTTGTCTCA
AGGTGTGACAATCCTTTGTGAAATTTCAGATGAACATGAATGGAACATGG
TGGAAGAAGAACTGGCTGACACTGTGCAGTGGAGACAGTGCAGTCCTCAA
TCTTCCTGCCTTATCTTGCTTCCCCCCCTACCTATATTTGAGCCCTGGGC
ATGGATTGTCATGACATTGCAGCGGAATGTTTGTGTGGGTCTAGCCATCC
CTACGACTTTGACCATAGTTAACCAGACACCGCCTTCCTGATTACAACAG
TACTCGGTGAGTTACTACAGTGCGGCAGTCTATATTGAGAAGGAGATGGA
GAAGATGCTCGCTCAGACGTACACGCTCAATACCCTAGAGGAGGTTAGGC
GGCAGGAGATCCTGTCAATGCTAGATGAAGAGAAGAGGATGAAGGACAAG
GAGGCTCGCCAAAGGATTATGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9854:1447..3320-

>mRNA_C-tenellus_contig9854.2.1 ID=mRNA_C-tenellus_contig9854.2.1|Name=mRNA_C-tenellus_contig9854.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=534bp|location=Sequence derived from alignment at C-tenellus_contig9854:1447..3320- (Choristocarpus tenellus KU2346)
CGCCCATGCAGGCTGAACTTTGCAGAGCGCAATAGGGAACGCAAAATGAG
GGAGGCGTTGGTCTCTGAGCTGAAGCTTCTCAATACCACTGGCCACGCCA
AGACGGTTATGAAGAACCTTTGCAAGAATCAGAAGGGAAAGATGTTTACT
GAGGAGATCGATACGGTCATGATACCAGACTATCTCTCTAAGTGTCCTCA
TCCCATGTGGTTCCGGAAAGTCGAGGCTAATCTGGGTGATGCCGATGATA
GTGGCCGAACTTACCTTCACCATTCTGAATTCATACGGGATATTCGGCTT
GTCATTTCCAACGCCCTTCGCTACAACAGTCCTGACGACCCAGATAATGC
CAATGATTCTTACTCGGTGAGTTACTACAGTGCGGCAGTCTATATTGAGA
AGGAGATGGAGAAGATGCTCGCTCAGACGTACACGCTCAATACCCTAGAG
GAGGTTAGGCGGCAGGAGATCCTGTCAATGCTAGATGAAGAGAAGAGGAT
GAAGGACAAGGAGGCTCGCCAAAGGATTATGGAG
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