mRNA_C-tenellus_contig9839.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9839.1.1
Unique NamemRNA_C-tenellus_contig9839.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9839.1.1 vs. uniprot
Match: A0A6H5JRL3_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.920e-14
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RYLSHGQEWSEKYQLKDRTRSIKYTLSPKWDEEFTLPVRRYG 126
            RYLSHGQEWSE+ +LKDRTR IK TL+P WDEEF LPVRR G
Sbjct:   20 RYLSHGQEWSERLRLKDRTRIIKTTLNPVWDEEFCLPVRRAG 61
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BLAST of mRNA_C-tenellus_contig9839.1.1 vs. uniprot
Match: D7FQN3_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN3_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 8.600e-12
Identity = 27/42 (64.29%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 RYLSHGQEWSEKYQLKDRTRSIKYTLSPKWDEEFTLPVRRYG 126
            RYLSHGQEWSE  +++++TR IK++L+P W+EEF+LPVRR G
Sbjct:  113 RYLSHGQEWSEPLRVREKTRVIKFSLNPVWNEEFSLPVRRAG 154
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BLAST of mRNA_C-tenellus_contig9839.1.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-11
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RYLSHGQEWSEKYQLKDRTRSIKYTLSPKWDEEFTLPVRRYG 126
            RYLS GQEWSE+ ++ DRTR+IKYTL+P W+E F+LPVRR G
Sbjct:  101 RYLSTGQEWSERLRICDRTRTIKYTLNPVWNETFSLPVRRAG 142
[Close]
BLAST of mRNA_C-tenellus_contig9839.1.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.910e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RYLSHGQEWSEKYQLKDRTRSIKYTLSPKWDEEFTLPVRRYG 126
            RYLS GQEWSE+ ++ DRTR+IKYTL+P W+E F+LP+RR G
Sbjct:  101 RYLSTGQEWSERLRICDRTRTIKYTLNPVWNETFSLPIRRAG 142
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9839.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRL3_9PHAE6.920e-1478.57C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FQN3_ECTSI8.600e-1264.29C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
D7G4V0_ECTSI1.400e-1169.05Protein kinase C, beta 1, like n=1 Tax=Ectocarpus ... [more]
A0A6H5JW30_9PHAE1.910e-1166.67C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9839contigC-tenellus_contig9839:592..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4V0
PFAMsC2,Pkinase_C
Model size126
Max annot lvl2759|Eukaryota
KEGG koko:K04868,ko:K15712,ko:K19728
KEGG TC8.A.16.2.2
KEGG Pathwayko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.3e-12
EggNOG OGsKOG0696@1|root,KOG0696@2759|Eukaryota
EC2.3.2.27
DescriptionProtein kinase c
Cds size126
COG categoryT
BRITEko00000,ko00001,ko01000,ko04040,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.8813841-CDS-C-tenellus_contig9839:591..7171680790203.8813841-CDS-C-tenellus_contig9839:591..717Choristocarpus tenellus KU2346CDSC-tenellus_contig9839 592..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9839.1.1prot_C-tenellus_contig9839.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9839 592..717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9839.1.1

>prot_C-tenellus_contig9839.1.1 ID=prot_C-tenellus_contig9839.1.1|Name=mRNA_C-tenellus_contig9839.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=42bp
RYLSHGQEWSEKYQLKDRTRSIKYTLSPKWDEEFTLPVRRYG
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mRNA from alignment at C-tenellus_contig9839:592..717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9839.1.1 ID=mRNA_C-tenellus_contig9839.1.1|Name=mRNA_C-tenellus_contig9839.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=126bp|location=Sequence derived from alignment at C-tenellus_contig9839:592..717- (Choristocarpus tenellus KU2346)
AGGTACCTCTCCCATGGTCAGGAGTGGTCAGAGAAGTACCAGTTGAAAGA
TAGGACCAGGTCCATCAAGTACACGCTATCGCCAAAGTGGGACGAGGAGT
TCACCTTACCTGTTCGCAGGTATGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9839:592..717-

>mRNA_C-tenellus_contig9839.1.1 ID=mRNA_C-tenellus_contig9839.1.1|Name=mRNA_C-tenellus_contig9839.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=126bp|location=Sequence derived from alignment at C-tenellus_contig9839:592..717- (Choristocarpus tenellus KU2346)
AGGTACCTCTCCCATGGTCAGGAGTGGTCAGAGAAGTACCAGTTGAAAGA
TAGGACCAGGTCCATCAAGTACACGCTATCGCCAAAGTGGGACGAGGAGT
TCACCTTACCTGTTCGCAGGTATGGG
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