mRNA_C-tenellus_contig9832.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9832.1.1
Unique NamemRNA_C-tenellus_contig9832.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9832.1.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.200e-22
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:   16 AGGNSKATTLKKHALPAMEAILREVARYTASVGESERSTLDHFLRLWLGTLEGNHPSKEDTVVALTGLASFSCAAMVLCSRDEAANIMHRLCVCLDSTLGRLQGLGITPDEEEEEEEGS 372
            AGG S    LKKHALPA+EA LREVARYTAS   + + TLD     +L  LEG  PS E+  VAL GLA+ S AA  L S  +AA++  RL VCLD+  G+L  +G   ++ +EE+ G+
Sbjct:  331 AGGRSSRLKLKKHALPAIEATLREVARYTAS-RPANKDTLDKLEGTFLKLLEGAKPSAEEVTVALAGLAALSPAATALSSYQDAADVADRLLVCLDAARGQLDEVGFAGEDSDEEDGGN 448
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9832.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKP7_ECTSI2.200e-2249.58Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9832contigC-tenellus_contig9832:789..3875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKP7
PFAMsFAT,FATC,NUC194,PI3_PI4_kinase,SMG1
Model size379
Max annot lvl2759|Eukaryota
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.61e-23
EggNOG OGsCOG5032@1|root,KOG0891@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size378
COG categoryBDLTU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.4911633-CDS-C-tenellus_contig9832:788..8751680790203.4911633-CDS-C-tenellus_contig9832:788..875Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 789..875 +
1680790203.504395-CDS-C-tenellus_contig9832:1727..18321680790203.504395-CDS-C-tenellus_contig9832:1727..1832Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 1728..1832 +
1680790203.5135465-CDS-C-tenellus_contig9832:2238..23551680790203.5135465-CDS-C-tenellus_contig9832:2238..2355Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 2239..2355 +
1680790203.5256886-CDS-C-tenellus_contig9832:3805..38741680790203.5256886-CDS-C-tenellus_contig9832:3805..3874Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 3806..3874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9832.1.1prot_C-tenellus_contig9832.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9832 789..3874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9832.1.1

>prot_C-tenellus_contig9832.1.1 ID=prot_C-tenellus_contig9832.1.1|Name=mRNA_C-tenellus_contig9832.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=126bp
VLKCVAGGNSKATTLKKHALPAMEAILREVARYTASVGESERSTLDHFLR
LWLGTLEGNHPSKEDTVVALTGLASFSCAAMVLCSRDEAANIMHRLCVCL
DSTLGRLQGLGITPDEEEEEEEGSYG
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mRNA from alignment at C-tenellus_contig9832:789..3875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9832.1.1 ID=mRNA_C-tenellus_contig9832.1.1|Name=mRNA_C-tenellus_contig9832.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3087bp|location=Sequence derived from alignment at C-tenellus_contig9832:789..3875+ (Choristocarpus tenellus KU2346)
GTTCTGAAATGTGTTGCAGGAGGCAACTCCAAGGCTACTACTCTCAAGAA
ACATGCGCTTCCTGCCATGGAGGCCATCTTGCGTGAGGTACTTGTGTAGT
CAAGTGGGAGATAAGGGTGTGTGTGTGTGTGTGTTGGGGGGGGGGTAGGG
CCGTGTGCACTTCAGTATTGTGATTTTTCCCTGTCAAAAAATTGATGGTT
ATGAGGTGCATTGGCAATTATGATGCAAGGGGTGCCCAATGCCAATATTT
TCAAGTGTTCTTTTCTTCTGATCCCCAACACCAACCCTAACTCTAACTCT
GTAACCCTAACTCTAACCCTATGTAACTAAGATGGATGAGAACATGACCT
TGATGGTGACGGCCTGTATAATAGAACATATTGAAGGAGATTTGGTGTGG
GAAAGAGACCCCGTTTTTGTGCCTACTTGCATGGTTATGTGGGGATGTGT
GTGCCTTGAAGGCATCATACTTTGAATGAACTCTCGAATCAGTGAACCCT
CGAATCAGTGACAGGTTAATTTTTTTTTTTCAGACCCTAAACAACCTTTG
TTGAGGTTGAAGTCGTGGGTTATGGTAAGGTCTAGGGGTCATGGTTTTGC
CTGTTTTTAGTATTATTTCCTTTGTTTTGTAGGTATGTATTCGTTATGGT
TAGGGTTATGGTTAGGGTTATGGTTAGGATTATTATTAGGAGTAAGCTGT
CAACAAGGGAGCTATGGACAATAGACATGTGTGGGGTGACAATGTCTAGA
TAATCCCCTTAAAGTATGCCTGCAATATTTTTTTTGTCCCCTCAACAGCA
CCTTTTTTTGGTTCCTTTGGTTGCTCAAATTTGACCGCCTTCTTGCCTTT
CCCCCCTTGAATCTGAACCTCACTTGCAATAACAGCCTGACACATTCCCC
CTCTCTCCTCTCCTACCCCTCACCCTGTCATGACATCAGGTGGCAAGGTA
CACAGCATCTGTGGGTGAGTCTGAGCGTTCCACACTTGACCACTTTCTTC
GTCTCTGGCTGGGTACCTTGGAAGGAAATCATCCGTCAAAAGAGGTGAGA
GAAAGTCTGCCGAGGGAGAGAGTAGAGCAACAACAGTGGTCGTGTGGGGG
CATGGGAGGCGGGGGGGGTGTAAGGAGATAATGTCGTGGAAAACATAGTG
GTGGCATATGTTCCTGATTTTGTTGTTTTCGGCATTGTTTGGGACTGGGA
CTGGGACTGGGACTGGGACTGGGACTGGGACTGGGACTGGGATTGGGATA
TATTTTTCAGGAGTAGCATTTTGTTGGGGGGAGAGGTTGTTGGGGTCACA
GGATTGGATTTGGGTTTGAGGGTTGCTCATGTGTGTATTGACCGAAATTA
CCACCAACTATTTCTCCAAGGTTAGGGTTAGTTGTGATCCTTCTGAGGAA
GTATCTTTGTATGAACCTTGCATTTCCTGATCCCTGTCCCATTGCCCCAG
GATACAGTGGTGGCGCTGACAGGGCTTGCCTCTTTCAGTTGTGCAGCAAT
GGTGTTATGCAGCAGGGACGAGGCGGCCAATATCATGCACCGCCTCTGTG
TATGCCTTGACAGCACTGTGAGAATCTAGTTAGGGTTAGAGTCAGGGTTG
GGGCTGGAGCTGGGGCTGGGGTAGAACTTGCCGTTAGGTTTGAATTTTGG
GTTTGGTTTAGGGTTGGGGTTAGGGTTGGGGCTAGGGTTAGGGTATGGTT
AGGATTAGGATTTAGGTTAGGGTTGAGTTATAACGTCCAGGTAAGGTTGG
GTTTGGGCTTGGTGTAATGTTAGAGTTTGAAGTTTTAGTCCCAGGATGGG
ATTTTTCAAGGTATGATATTATATAGACAGGGTTGCTTGGGACTATACTT
GGGATCTTGGCTCTTTTGAAGAGAGAGGGGAACCTGCTGGTTGTTTTTCT
TGGAGTAGATGTCCTTGTGCAACAATTTTATCTTTGTATTGATGGGTCCA
TTCTTGTCCCTTTTGTATGTATGCCGTGTTTATACTATTATGACATACAA
GAGTGAGTGTTACTGCTGTATTTTTGAGACCTCGAGAGTGGAGTTAGAGT
TAGGGTTGAGATTAGGATTGGCTTTAGAGTTGGAGTTCAGGGGATAGGGC
TGGGGCTAGATGGATGGAGTAAGGGTTAGGGTTAGGGTTAGGGTTAGGCC
TAGGGTTAGGGCTAGGCTCATCCACTGTGGGGTTGTGTGCAATCCTATTG
TGTTCTACACCTGGTCATCTATCTAGATGTTTGTAGTTTGTGCCCTGGGG
CTGTGATTGTCATCAGAGTGCACACACAGTTCTGCTAGCATTAATATAGT
AGTATGAATTGCTGGTGTATTATTATTTTAATATTTGAAGGTGCTGCTGT
GCTTGGTTTAGGGTTCAAAACAAAAAGTTTGTGCTATCCTTGATAGGTTG
GCTATCTCTATGTGTCCATCTATACGGCTGTTTGTAGTGTATTGTGTGTT
TGAGAATAGGGTGTACAAACCTATGTTTTGTGCGTGTTGGCTCAACCTTG
ACCATTGCTCTAAGGGTGATGCGATTGCCAGAACATTGTGAACTAGAACT
GTAAATTTGGACCTGTATGCATTGGAATGCTAGGAGCTTTTCCTGTACTA
ACAAAATATTGGCAGAATATCCCACATCCCTCTAAACATTTATCCTGTTG
CTTTCTCTACGTACAGCAAAATAATTGTTTTTCATGCCTGTCCTTTTCAA
TCCACTTTGGGGACTTGTACTCTCCTGAGAGAATATCGTTCATTCAAGGT
CATTGAAGCTCCGACACCCACCGCTTTCTTCATCCATATTTTCTCAACTT
CTCTGCCAGTATCTTATCCCCTCCACTACCCTCCCCCCCCCGTGTCACAC
CCTACCATCTAGTTAGTCCAACCACACACCTTCCTTTGCTTATGGAATGG
TCTATGTCAGCCTCTGCACACAGGCAGACTGTCCGGTTTGAGCCTTTTTG
TTATTCCTTGTAAATAATCCCCCAACCTCTCCTTCTCCTCCCTCTTTTTG
TGGTTTCTGTTTTCTAGCTGGGTCGCTTGCAGGGATTGGGGATCACCCCA
GACGAGGAGGAGGAAGAGGAGGAAGGGTCTTACGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9832:789..3875+

>mRNA_C-tenellus_contig9832.1.1 ID=mRNA_C-tenellus_contig9832.1.1|Name=mRNA_C-tenellus_contig9832.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=378bp|location=Sequence derived from alignment at C-tenellus_contig9832:789..3875+ (Choristocarpus tenellus KU2346)
GTTCTGAAATGTGTTGCAGGAGGCAACTCCAAGGCTACTACTCTCAAGAA
ACATGCGCTTCCTGCCATGGAGGCCATCTTGCGTGAGGTGGCAAGGTACA
CAGCATCTGTGGGTGAGTCTGAGCGTTCCACACTTGACCACTTTCTTCGT
CTCTGGCTGGGTACCTTGGAAGGAAATCATCCGTCAAAAGAGGATACAGT
GGTGGCGCTGACAGGGCTTGCCTCTTTCAGTTGTGCAGCAATGGTGTTAT
GCAGCAGGGACGAGGCGGCCAATATCATGCACCGCCTCTGTGTATGCCTT
GACAGCACTCTGGGTCGCTTGCAGGGATTGGGGATCACCCCAGACGAGGA
GGAGGAAGAGGAGGAAGGGTCTTACGGG
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