mRNA_C-tenellus_contig9823.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9823.1.1
Unique NamemRNA_C-tenellus_contig9823.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9823.1.1 vs. uniprot
Match: D8LTL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.190e-30
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 LQTFMTVSCRRVTIWDGKYGHAKATFHANDLFGLPESDITSCCLDQQGHKLVVGSDTGMIRLCFSHNGSLIRNLDPHTGLVNWLSFSSHKTD 276
            LQ  +TVS RRVTIWD K G A  T  +  L G  ++DIT+   D QGHKLVVG+DTG IR CFSH+GS+IR LDPH G VNWLSF+S KTD
Sbjct:  475 LQRLVTVSARRVTIWDAKSGEALTTLTSERLLGNDQADITAFSSDHQGHKLVVGADTGEIRACFSHSGSVIRQLDPHNGPVNWLSFASRKTD 566
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BLAST of mRNA_C-tenellus_contig9823.1.1 vs. uniprot
Match: A0A2P6NPU2_9EUKA (EF-hand domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NPU2_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 1.690e-10
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    7 TFMTVSCRRVTIWDGKYGHAKATFHANDLFGLPESDITSCCLDQQGHKLVVGSDTGMIRLCFSHNGSLIRNLDPHTGLVNWLSFSSHKT 273
            T +T S R + IWD K G    TF +     + +  +TS CLDQ+  K++VG+  G I++    NGSL+R LDPHT  V+ +    ++T
Sbjct:  551 TILTASGREIKIWDAKNGTVLQTFPS-----ISDHKMTSVCLDQRQRKIIVGTTKGDIKMFNYSNGSLLRELDPHTSEVSAVLCGPNRT 634
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BLAST of mRNA_C-tenellus_contig9823.1.1 vs. uniprot
Match: G4YZI3_PHYSP (EF-hand domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4YZI3_PHYSP)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-5
Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:    1 LQTFMTVSCRRVTIWDGKYGHAKATFHANDLFGL-----PESD------ITSCCLDQQGHKLVVGSDTGMIRLCFSHNGSLIRNLDPHTGLVNWLSF 258
            L   +  +  ++ +W G  G    T+    + G      PES       IT+ C+D +  K++VG DTG I++  + NG++++ LDPHT  V  +S+
Sbjct:  495 LNVVVGATSTKLLLWRGDTGALWKTYEYAAILGSTQTADPESREAHARAITAVCVDDRERKIIVGDDTGSIKVVNAVNGNVMKELDPHTECVVSVSY 591
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BLAST of mRNA_C-tenellus_contig9823.1.1 vs. uniprot
Match: H3HBA9_PHYRM (EF-hand domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBA9_PHYRM)

HSP 1 Score: 49.7 bits (117), Expect = 8.250e-5
Identity = 20/48 (41.67%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  115 ITSCCLDQQGHKLVVGSDTGMIRLCFSHNGSLIRNLDPHTGLVNWLSF 258
            IT+ C+D +  K++VG DTG I++  + NG++++ LDPHT  V  +S+
Sbjct:  867 ITAVCVDDRERKVIVGDDTGSIKVLNAVNGNVMKELDPHTNCVVGVSY 914
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9823.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTL2_ECTSI3.190e-3063.04EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2P6NPU2_9EUKA1.690e-1038.20EF-hand domain-containing protein n=1 Tax=Planopro... [more]
G4YZI3_PHYSP1.750e-529.90EF-hand domain-containing protein n=6 Tax=Phytopht... [more]
H3HBA9_PHYRM8.250e-541.67EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9823contigC-tenellus_contig9823:3946..5218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTL2
Model size282
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.32e-30
EggNOG OGs2CUZ5@1|root,2RPUY@2759|Eukaryota
DescriptionWD40 repeats
Cds size270
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.1481605-UTR-C-tenellus_contig9823:3945..39571680790203.1481605-UTR-C-tenellus_contig9823:3945..3957Choristocarpus tenellus KU2346UTRC-tenellus_contig9823 3946..3957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.1623838-CDS-C-tenellus_contig9823:3957..40861680790203.1623838-CDS-C-tenellus_contig9823:3957..4086Choristocarpus tenellus KU2346CDSC-tenellus_contig9823 3958..4086 +
1680790203.1757503-CDS-C-tenellus_contig9823:5077..52181680790203.1757503-CDS-C-tenellus_contig9823:5077..5218Choristocarpus tenellus KU2346CDSC-tenellus_contig9823 5078..5218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9823.1.1prot_C-tenellus_contig9823.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9823 3958..5218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9823.1.1

>prot_C-tenellus_contig9823.1.1 ID=prot_C-tenellus_contig9823.1.1|Name=mRNA_C-tenellus_contig9823.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=90bp
MTVSCRRVTIWDGKYGHAKATFHANDLFGLPESDITSCCLDQQGHKLVVG
SDTGMIRLCFSHNGSLIRNLDPHTGLVNWLSFSSHKTDK*
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mRNA from alignment at C-tenellus_contig9823:3946..5218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9823.1.1 ID=mRNA_C-tenellus_contig9823.1.1|Name=mRNA_C-tenellus_contig9823.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1273bp|location=Sequence derived from alignment at C-tenellus_contig9823:3946..5218+ (Choristocarpus tenellus KU2346)
CTTCAGACGTTCATGACAGTGAGCTGTAGGAGGGTCACCATATGGGATGG
AAAGTATGGCCATGCTAAGGCAACTTTTCATGCAAACGACCTCTTTGGTC
TGCCTGAATCAGACATCACCTCGTGCTGCCTCGACCAACAGGTATCATAG
GGAAGGTTGGCATCGTAGTCCGAGATAGACACCTGAACATTACTTAATCT
AGCTCAACCTCCGCAGTACACCTAGTTTTCCATACTGCTAAGGAGCTTAA
CAATGGATCAATGGATCAAAATCTCGTCTATGTTTGAAAGTGGTTCTTAG
ATTGAAAACTGATTTCGGATTATGTCTTGACTCTTCCAAAATTCTCAAAG
TAATAGTATGGAACCACCTCTTTCCTTAATTCATACAATTGTTGAGGTCA
GACTACATTTCTTAGGTCTACTCACTGACTATGACCTTCAGAGAAAAATG
CTAGAACTCTTCTTGTTGGAAGAGGCACACAGGGATCAACTATAACTACT
CTGACAGCAAAAATTGACTTTTTTTTTCAACTCCAGCACACCTCAAAATC
TCCCAAGTAAGCTACACACCCTCTGTCTTTCAGTCCTCTTGTGTAAGCAA
TGAGCTAGCTTAAGTATCGAAGAAGAATTTGGGCGAGAGCATTTAAGAGG
ATAGGAGTTTGGCTCTCTTTGTCCTTTCGGGGCTCGGCTTCCCACGGGTA
TTTTATGCCCCTTTCCGGTTTTCTGTGTGATCACAGTTACAAAAAAATGT
ATACAACTATGAAAGGTGTGTCCGGCAAGGATATTGACACTTCCTAACAA
CAAAAATAGCCAAATTCATCGAGATCGCAACATTGGATTTATGATCCCAA
AAGGACACGGCCCTACCCTCTTAAATGCTATGGCCCTTTAATATTTCTAT
AAACGAAAATACACCTCGACATTGGCCGCACCTTGAGCAATAGCATCCTT
ACTTTGAAGCACTCAAGCACTTACACATTTGGCAGACTATGCTGTGGATG
CAAATTGAAATCATTCCAATTGAAATCATTCCATGAATAGTATTCTGTGT
AAGAACACAACATAGTCTACGAACTATGTGACAAATTGTACTGACAAGTG
CTTTGAACAGACATGTATTGTGTCAACAACAGGGACACAAGCTAGTGGTG
GGATCGGACACTGGGATGATCAGGCTATGCTTCTCTCACAATGGATCTCT
CATCAGGAACCTCGATCCCCACACAGGCTTGGTGAATTGGCTTTCATTCT
CCTCACACAAGACAGACAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9823:3946..5218+

>mRNA_C-tenellus_contig9823.1.1 ID=mRNA_C-tenellus_contig9823.1.1|Name=mRNA_C-tenellus_contig9823.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=270bp|location=Sequence derived from alignment at C-tenellus_contig9823:3946..5218+ (Choristocarpus tenellus KU2346)
ATGACAGTGAGCTGTAGGAGGGTCACCATATGGGATGGAAAGTATGGCCA
TGCTAAGGCAACTTTTCATGCAAACGACCTCTTTGGTCTGCCTGAATCAG
ACATCACCTCGTGCTGCCTCGACCAACAGGGACACAAGCTAGTGGTGGGA
TCGGACACTGGGATGATCAGGCTATGCTTCTCTCACAATGGATCTCTCAT
CAGGAACCTCGATCCCCACACAGGCTTGGTGAATTGGCTTTCATTCTCCT
CACACAAGACAGACAAGTGA
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