mRNA_C-tenellus_contig981.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig981.1.1
Unique NamemRNA_C-tenellus_contig981.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig981.1.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.910e-38
Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:   13 EYLLRVVYPKGATMRDGLEIDESSVVGNLPYGAVTTASVRIICSCGIPRLKTPNGWISERLRGGMEEDVVVVLRHCPPEPIRYLVICPGGAMVRETPELEGPEAK 327
            EYLL+VVY KGATMRDG+EID ++VVGNLP+G+   A+ R+ICSCGIPR KT  GWISE LRGG  E VV +L H P EPIRY VIC GGAMVRET  + G EAK
Sbjct: 6690 EYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTVVATARVICSCGIPRFKTRRGWISEWLRGGENELVVELLHHKPREPIRYQVICMGGAMVRETASISGREAK 6794
[Close]
BLAST of mRNA_C-tenellus_contig981.1.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.080e-36
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:   13 EYLLRVVYPKGATMRDGLEIDESSVVGNLPYGAVTTASVRIICSCGIPRLKTPNGWISERLRGGMEEDVVVVLRHCPPEPIRYLVICPGGAMVRETPELEGPEAK 327
            EYLL+VVY KGATMRDG+EID ++ VGNLP+G+   A+ R+ICSCGIPR KT  GW+SE LRG   E VV VL H P +PIRY VIC GGAMVRET  + G EAK
Sbjct: 7291 EYLLKVVYSKGATMRDGVEIDLAAAVGNLPFGSTVVATARVICSCGIPRYKTRRGWVSEWLRGEGNERVVEVLHHKPKKPIRYQVICMGGAMVRETASISGREAK 7395
[Close]
BLAST of mRNA_C-tenellus_contig981.1.1 vs. uniprot
Match: A0A7S2VVZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVZ5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.090e-9
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   16 YLLRVVYPKGATMRDGLEIDESSVVGNLPYGAVTTASVRIICSCGIPRLKTPNGWISERLRGGMEEDVVVVL 231
            Y+LR+V P GA +RDG+EID  + VG+   G +  A+ R I   G+ R + P GW+SE  RG   E +  V+
Sbjct: 1000 YILRIVNPDGAVIRDGIEIDFCNNVGSYDMGTILVANDRCINDSGVMRYQGPRGWVSECTRGQGREPICEVV 1071
[Close]
BLAST of mRNA_C-tenellus_contig981.1.1 vs. uniprot
Match: K0ST15_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0ST15_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 2.110e-7
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:   22 LRVVYPKGATMRDGLEIDESSV-VGNLPYGAVTTAS---VRIICSCGIPRLKTPN----GWISERLRGGMEEDVVVVL 231
            L+++YP GA +R  LEI + SV +G +P GA+        R I SCG+ R    +    GWIS+R+RGG EE+++ +L
Sbjct: 4136 LKIIYPGGAVVRSDLEIFDGSVSLGTIPNGAIIPPEDVIERRINSCGVVRFLVTHDVGRGWISQRIRGGDEEEIIEIL 4213
[Close]
BLAST of mRNA_C-tenellus_contig981.1.1 vs. uniprot
Match: A0A7S1VNT6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNT6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.760e-5
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:   22 LRVVYPKGATMRDGLEI-DESSVVGNLPYGAVTTAS---VRIICSCGIPRLKTPN-----GWISERLRGGMEEDVV 222
            LR+VY  GA +R  LEI D S  +G++P   +        R + SCGI R +        GWIS R+RGGMEE ++
Sbjct: 2762 LRIVYQGGAVVRSDLEIFDRSENMGSIPCDTLIPQKDVLERRVSSCGIVRYRIRYEAVGVGWISSRIRGGMEEPII 2837
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig981.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI1.910e-3868.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE1.080e-3665.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2VVZ5_9STRA9.090e-941.67Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
K0ST15_THAOC2.110e-741.03Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1VNT6_9STRA7.760e-540.79Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig981contigC-tenellus_contig981:258..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCZ5
PFAMsRCC1
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.13e-39
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-00_005790.1
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
Cds size327
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.6296344-CDS-C-tenellus_contig981:257..5841680790202.6296344-CDS-C-tenellus_contig981:257..584Choristocarpus tenellus KU2346CDSC-tenellus_contig981 258..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig981.1.1prot_C-tenellus_contig981.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig981 258..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig981.1.1

>prot_C-tenellus_contig981.1.1 ID=prot_C-tenellus_contig981.1.1|Name=mRNA_C-tenellus_contig981.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=109bp
MGDAEYLLRVVYPKGATMRDGLEIDESSVVGNLPYGAVTTASVRIICSCG
IPRLKTPNGWISERLRGGMEEDVVVVLRHCPPEPIRYLVICPGGAMVRET
PELEGPEAK
back to top

mRNA from alignment at C-tenellus_contig981:258..584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig981.1.1 ID=mRNA_C-tenellus_contig981.1.1|Name=mRNA_C-tenellus_contig981.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=327bp|location=Sequence derived from alignment at C-tenellus_contig981:258..584- (Choristocarpus tenellus KU2346)
ATGGGGGATGCGGAATACCTGTTGCGTGTGGTCTATCCAAAGGGTGCTAC
TATGCGGGATGGCCTAGAAATCGATGAGTCGTCTGTTGTGGGAAATCTGC
CATATGGTGCTGTCACTACAGCTAGTGTGAGGATAATCTGCTCGTGTGGG
ATCCCCCGGTTGAAGACACCTAATGGATGGATCAGTGAGAGGTTGCGAGG
AGGGATGGAGGAGGATGTTGTTGTAGTGCTCCGCCATTGTCCACCAGAGC
CTATTCGTTACCTTGTGATTTGTCCTGGTGGGGCTATGGTGAGGGAAACT
CCAGAGCTTGAGGGGCCAGAGGCAAAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig981:258..584-

>mRNA_C-tenellus_contig981.1.1 ID=mRNA_C-tenellus_contig981.1.1|Name=mRNA_C-tenellus_contig981.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=327bp|location=Sequence derived from alignment at C-tenellus_contig981:258..584- (Choristocarpus tenellus KU2346)
ATGGGGGATGCGGAATACCTGTTGCGTGTGGTCTATCCAAAGGGTGCTAC
TATGCGGGATGGCCTAGAAATCGATGAGTCGTCTGTTGTGGGAAATCTGC
CATATGGTGCTGTCACTACAGCTAGTGTGAGGATAATCTGCTCGTGTGGG
ATCCCCCGGTTGAAGACACCTAATGGATGGATCAGTGAGAGGTTGCGAGG
AGGGATGGAGGAGGATGTTGTTGTAGTGCTCCGCCATTGTCCACCAGAGC
CTATTCGTTACCTTGTGATTTGTCCTGGTGGGGCTATGGTGAGGGAAACT
CCAGAGCTTGAGGGGCCAGAGGCAAAG
back to top