mRNA_C-tenellus_contig9803.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9803.3.1
Unique NamemRNA_C-tenellus_contig9803.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9803.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9803contigC-tenellus_contig9803:4251..5774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1525
Hectar predicted targeting categoryother localisation
Exons1
Cds size1308
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.334697-UTR-C-tenellus_contig9803:4250..44661680790202.334697-UTR-C-tenellus_contig9803:4250..4466Choristocarpus tenellus KU2346UTRC-tenellus_contig9803 4251..4466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.3476133-CDS-C-tenellus_contig9803:4466..57741680790202.3476133-CDS-C-tenellus_contig9803:4466..5774Choristocarpus tenellus KU2346CDSC-tenellus_contig9803 4467..5774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9803.3.1prot_C-tenellus_contig9803.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9803 4467..5774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9803.3.1

>prot_C-tenellus_contig9803.3.1 ID=prot_C-tenellus_contig9803.3.1|Name=mRNA_C-tenellus_contig9803.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=436bp
MSIQDGGELRIQDIDGGRVFLKRNRDGERGVPKVKRKAISPVMADASQIA
DSVDGMEASFRPIAHTPPPSLSTSTGLILPWTSGQGEAGARCLEESIDGN
LGGGLGVQSGDRNQNLVSASMELVKVEHHIAEVNKNQNVCPALPVVEGGK
TMSRGRGKGKARAVSPLVVQSRKFGKVKDKMAMPPRYLTGNGNEGDNSTK
TARTRLENGTPESMETRSSPKVVPGFTVVGGSTNSQATLKGDEASWLNRR
TRYIPLTNLRDGESVGKNSFGEVGELQSISVDTPNTQDKTEMMDTDVERE
REEDVPSLKVKRRRRTLRPPTPPEGFSSGQSQDLQLAEVLSREPGVGRRL
RRRVETPSDDSSSNGPGSASPSEQGAGQVLGSMPARGLAQASAVPVKKRN
RQLLVKAEEIEVANSGGTFTEGGGSRGGGQRRGPGR
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mRNA from alignment at C-tenellus_contig9803:4251..5774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9803.3.1 ID=mRNA_C-tenellus_contig9803.3.1|Name=mRNA_C-tenellus_contig9803.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1524bp|location=Sequence derived from alignment at C-tenellus_contig9803:4251..5774+ (Choristocarpus tenellus KU2346)
CAGCCCATTCAAGTCCGAAGAAAGCGACTTGCAGGATAGAAAGAGCTTTC
CTGAGGTGGGTGGGCGGTTTGTCGGACGGTGGGTGCCATCCATCCGTCAT
TCGTTCGACGCAGAACGAGCTTTTGATCAGAAGTGGATGATCTCGCGCGG
AAGAAGAAGTCGAAACCTGCGAAATCTTGATAGAAGGACCTAAAGAGGAA
AGAGAACTAACCCACCATGAGTATTCAAGACGGCGGTGAGCTAAGGATAC
AAGACATTGATGGGGGAAGAGTTTTTCTGAAAAGGAACAGGGATGGTGAG
AGGGGGGTACCCAAGGTCAAGCGAAAGGCCATCTCGCCGGTCATGGCTGA
TGCATCCCAAATTGCGGATTCAGTCGACGGGATGGAAGCCTCATTCAGAC
CAATAGCGCACACTCCTCCTCCTTCTCTGTCAACCTCCACTGGGTTAATT
CTTCCCTGGACTTCTGGTCAAGGAGAAGCTGGTGCTAGATGCCTGGAGGA
GAGCATTGACGGAAACTTGGGTGGGGGGTTGGGGGTCCAGTCAGGTGATC
GCAACCAAAACCTAGTGTCGGCCAGTATGGAGTTGGTCAAAGTGGAGCAC
CATATTGCCGAAGTTAACAAGAATCAGAACGTTTGCCCTGCTCTTCCGGT
CGTGGAAGGTGGAAAGACCATGAGTAGAGGTAGGGGAAAGGGGAAGGCCA
GAGCCGTTTCGCCGTTGGTTGTCCAGAGTAGAAAGTTTGGGAAAGTCAAG
GATAAGATGGCAATGCCACCGAGATATCTGACGGGAAATGGAAACGAAGG
TGACAATTCGACAAAGACCGCCCGTACCAGACTCGAAAACGGAACTCCAG
AGAGCATGGAAACTAGATCATCACCAAAGGTGGTTCCTGGTTTCACCGTG
GTTGGAGGTAGCACCAATAGTCAAGCCACACTGAAGGGTGATGAGGCGAG
TTGGCTCAACCGACGCACACGGTACATACCACTCACAAACCTCAGGGATG
GAGAGAGTGTGGGAAAGAACAGTTTTGGTGAAGTTGGGGAACTCCAAAGT
ATCAGTGTTGACACACCAAATACCCAAGATAAGACAGAGATGATGGACAC
GGACGTCGAGAGGGAAAGGGAAGAGGATGTACCAAGTCTAAAAGTAAAAC
GACGCCGCCGCACACTTCGCCCCCCCACCCCACCTGAGGGATTCTCCTCA
GGACAAAGTCAAGACCTGCAGCTGGCAGAAGTACTGAGCAGGGAGCCTGG
GGTTGGGCGTCGCCTTCGCCGCCGTGTAGAAACTCCTTCTGATGATAGCA
GTAGCAATGGCCCAGGAAGTGCTTCACCAAGTGAACAGGGAGCAGGCCAG
GTCTTGGGGTCAATGCCAGCACGGGGCCTGGCACAGGCATCAGCTGTTCC
TGTCAAAAAGAGGAACCGGCAGCTTTTAGTCAAGGCAGAGGAGATTGAGG
TGGCCAATTCTGGAGGTACTTTCACAGAGGGGGGTGGGAGCCGTGGAGGA
GGTCAGCGCCGGGGGCCCGGCAGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9803:4251..5774+

>mRNA_C-tenellus_contig9803.3.1 ID=mRNA_C-tenellus_contig9803.3.1|Name=mRNA_C-tenellus_contig9803.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1308bp|location=Sequence derived from alignment at C-tenellus_contig9803:4251..5774+ (Choristocarpus tenellus KU2346)
ATGAGTATTCAAGACGGCGGTGAGCTAAGGATACAAGACATTGATGGGGG
AAGAGTTTTTCTGAAAAGGAACAGGGATGGTGAGAGGGGGGTACCCAAGG
TCAAGCGAAAGGCCATCTCGCCGGTCATGGCTGATGCATCCCAAATTGCG
GATTCAGTCGACGGGATGGAAGCCTCATTCAGACCAATAGCGCACACTCC
TCCTCCTTCTCTGTCAACCTCCACTGGGTTAATTCTTCCCTGGACTTCTG
GTCAAGGAGAAGCTGGTGCTAGATGCCTGGAGGAGAGCATTGACGGAAAC
TTGGGTGGGGGGTTGGGGGTCCAGTCAGGTGATCGCAACCAAAACCTAGT
GTCGGCCAGTATGGAGTTGGTCAAAGTGGAGCACCATATTGCCGAAGTTA
ACAAGAATCAGAACGTTTGCCCTGCTCTTCCGGTCGTGGAAGGTGGAAAG
ACCATGAGTAGAGGTAGGGGAAAGGGGAAGGCCAGAGCCGTTTCGCCGTT
GGTTGTCCAGAGTAGAAAGTTTGGGAAAGTCAAGGATAAGATGGCAATGC
CACCGAGATATCTGACGGGAAATGGAAACGAAGGTGACAATTCGACAAAG
ACCGCCCGTACCAGACTCGAAAACGGAACTCCAGAGAGCATGGAAACTAG
ATCATCACCAAAGGTGGTTCCTGGTTTCACCGTGGTTGGAGGTAGCACCA
ATAGTCAAGCCACACTGAAGGGTGATGAGGCGAGTTGGCTCAACCGACGC
ACACGGTACATACCACTCACAAACCTCAGGGATGGAGAGAGTGTGGGAAA
GAACAGTTTTGGTGAAGTTGGGGAACTCCAAAGTATCAGTGTTGACACAC
CAAATACCCAAGATAAGACAGAGATGATGGACACGGACGTCGAGAGGGAA
AGGGAAGAGGATGTACCAAGTCTAAAAGTAAAACGACGCCGCCGCACACT
TCGCCCCCCCACCCCACCTGAGGGATTCTCCTCAGGACAAAGTCAAGACC
TGCAGCTGGCAGAAGTACTGAGCAGGGAGCCTGGGGTTGGGCGTCGCCTT
CGCCGCCGTGTAGAAACTCCTTCTGATGATAGCAGTAGCAATGGCCCAGG
AAGTGCTTCACCAAGTGAACAGGGAGCAGGCCAGGTCTTGGGGTCAATGC
CAGCACGGGGCCTGGCACAGGCATCAGCTGTTCCTGTCAAAAAGAGGAAC
CGGCAGCTTTTAGTCAAGGCAGAGGAGATTGAGGTGGCCAATTCTGGAGG
TACTTTCACAGAGGGGGGTGGGAGCCGTGGAGGAGGTCAGCGCCGGGGGC
CCGGCAGA
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