mRNA_C-tenellus_contig980.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig980.1.1
Unique NamemRNA_C-tenellus_contig980.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig980.1.1 vs. uniprot
Match: D7FID3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID3_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.730e-11
Identity = 67/205 (32.68%), Postives = 102/205 (49.76%), Query Frame = 1 
Query:  943 KSPPTPRAVDGLFSPMWVHLPPKSIFTIHHSPRRAPPPSSQTKAKWETDSGCSSTSLRSAGGDVGPSPRPRGVSSAKDSSSVLSSAMNKREQSSSMGLTEEC--PFSFASGTVTEE--IWGKMMQVQAHRDRYLRQVAEMVQDEQRQDSQRNKELRRVSKFPQRCERLRLRQKHERQERRTMINRIRRDIELIMVQETSRLGLIR 1545
            + P TPR+     SP WV  P +         +      S   A W        T+   +GGD     +      + +  S  SS + KRE +  +  +E+    FS A+GT  E+  +   M+Q Q  RDRY  Q+ +++ DE  +++ R   L +    P R  RL+L+ + ERQE+RT+IN IR+D ELI+VQ+ + LGLIR
Sbjct:  360 QEPATPRSTKRAMSPFWVPPPQEPPLRCRELAKMT----SALAAGWP-----GGTAENESGGDDRGGGKSGNSCPSLEGGSHKSSPVRKRESNWPIESSEDAMATFSSAAGTAQEDERVRRTMLQAQEMRDRYFSQIRQIIMDECAEEACRAAALEKAGGHPLRSRRLQLQHERERQEKRTLINWIRKDTELIVVQKMAALGLIR 555
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BLAST of mRNA_C-tenellus_contig980.1.1 vs. uniprot
Match: A0A6H5KZ56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ56_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.710e-6
Identity = 72/219 (32.88%), Postives = 106/219 (48.40%), Query Frame = 1 
Query:  895 GQDSSNSVTEFSSDIV-----KSPPTPRAVDGLFSPMWVHLPPKSIFTIHHSPRRAPPPSSQTKAKWETDSGCSSTSLRSAGGDVGPSPRPRGVSSAKDSSSVL------SSAMNKREQSSSMGLTEEC--PFSFASGTVTEE--IWGKMMQVQAHRDRYLRQVAEMVQDEQRQDSQRNKELRRVSKFPQRCERLRLRQKHERQERRTMINRIRRDIEL 1506
            G  S  S   F++D++     + PPTPR+   + SP WV             P + PP   +  AK         TS  +AG   G +      S   DSS  L      SS + KRE    +  +++    FS A+GTV E+  +   M+Q Q  RDRY RQ   M++DE  +++ R   L +    P R +RL+L+ + ERQE+RT+IN IR+D E+
Sbjct:  358 GSGSGASSVTFATDMLNHPSHQEPPTPRSTKRVMSPFWV------------PPPQEPPLLCREIAKM--------TSALAAGWPGGTA---ENESRGNDSSLSLGRGRYKSSPIRKREGKWPLESSDDAMATFSSAAGTVQEDERVRRTMLQAQEMRDRYFRQ---MIKDECAEEACRAAALAKAGGHPLRSKRLQLQHERERQEKRTLINWIRKDTEV 550
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig980.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID3_ECTSI4.730e-1132.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ56_9PHAE4.710e-632.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig980contigC-tenellus_contig980:5631..9724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1689
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001470.1
Cds size1368
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig980.1.1prot_C-tenellus_contig980.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig980 5811..9583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.0685403-UTR-C-tenellus_contig980:5630..58101680790202.0685403-UTR-C-tenellus_contig980:5630..5810Choristocarpus tenellus KU2346UTRC-tenellus_contig980 5631..5810 +
1680790202.126085-UTR-C-tenellus_contig980:9583..97241680790202.126085-UTR-C-tenellus_contig980:9583..9724Choristocarpus tenellus KU2346UTRC-tenellus_contig980 9584..9724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.07822-CDS-C-tenellus_contig980:5810..60751680790202.07822-CDS-C-tenellus_contig980:5810..6075Choristocarpus tenellus KU2346CDSC-tenellus_contig980 5811..6075 +
1680790202.0872974-CDS-C-tenellus_contig980:6346..72351680790202.0872974-CDS-C-tenellus_contig980:6346..7235Choristocarpus tenellus KU2346CDSC-tenellus_contig980 6347..7235 +
1680790202.0989203-CDS-C-tenellus_contig980:8433..86021680790202.0989203-CDS-C-tenellus_contig980:8433..8602Choristocarpus tenellus KU2346CDSC-tenellus_contig980 8434..8602 +
1680790202.1138859-CDS-C-tenellus_contig980:9538..95831680790202.1138859-CDS-C-tenellus_contig980:9538..9583Choristocarpus tenellus KU2346CDSC-tenellus_contig980 9539..9583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig980.1.1

>prot_C-tenellus_contig980.1.1 ID=prot_C-tenellus_contig980.1.1|Name=mRNA_C-tenellus_contig980.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=456bp
MLYAVTTLSRYVVFLPGLQCHQRNRETYTLARALLVHRISNASRWDTAKT
PTQGRPESCAILSGRNMGHGTTSGILQAVESASNLTLEDTFPPNSGTPAS
SQHYRSTNIHPEAPFEASELRYARGKGGTFSWGRLCDAESGVTLELSRPV
WKCMIVQDPSSQSLANDKETKSWNAEENVLDDSEQCLEQCVMGEGDRREC
GENRFPAIVTHPTTFGDGIGSNSEYFTDGQASKTNFTCGQDSSNSVTEFS
SDIVKSPPTPRAVDGLFSPMWVHLPPKSIFTIHHSPRRAPPPSSQTKAKW
ETDSGCSSTSLRSAGGDVGPSPRPRGVSSAKDSSSVLSSAMNKREQSSSM
GLTEECPFSFASGTVTEEIWGKMMQVQAHRDRYLRQVAEMVQDEQRQDSQ
RNKELRRVSKFPQRCERLRLRQKHERQERRTMINRIRRDIELIMVQETSR
LGLIR*
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mRNA from alignment at C-tenellus_contig980:5631..9724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig980.1.1 ID=mRNA_C-tenellus_contig980.1.1|Name=mRNA_C-tenellus_contig980.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4094bp|location=Sequence derived from alignment at C-tenellus_contig980:5631..9724+ (Choristocarpus tenellus KU2346)
CAAAGTAAAGGACCGGCTAGCTGAATCTATGAAGGGGTCTAGAGCAAAGG
TCTCGAGAGAACTTCGTAATGAACGGGCAAGGTGAGTAGCTGAACGGGAT
CACTTGAGTTCACCCGATAGCCCAGGCATTCTAATGCAGGTCGCTCGATC
AACGGCGTAAGCCAATCAACATCATAATTCATGTTGTATGCAGTTACTAC
CTTGTCTAGATATGTAGTTTTCCTCCCTGGACTTCAGTGCCACCAACGAA
ATCGAGAAACCTATACTTTGGCTAGAGCTCTACTAGTACACCGCATTTCC
AATGCAAGCAGGTGGGATACGGCAAAGACGCCAACCCAAGGGCGACCTGA
AAGCTGTGCAATACTAAGTGGTAGAAATATGGGTCACGGAACAACATCTG
GCATTCTTCAAGCAGTTGAATCCGCCTCCAACTTGACACTAGAAGGTCAG
CGATCTTGAAAGCTAGAATAGGTAGATTAGTTAGTACTCCACTCTTGATC
TTTACTTATCAGCTTATAACATGCCGCAGAGATTTTGCACTTCTCTCAAA
TTTTCGTAAGTATGCTAAACATTTAACAGCAGTAACAGTATCACACCTAC
GGTTGCTTATCCCTGTCGTGACTAGCGTGCATTACTGGATCACGCAGGCA
AAAAGTACTTGGTATTAGACCACTTTACCAATCTCCAGGTCGTAATCGAA
CCCCTTCGCGCGACAGACACTTTCCCTCCAAACTCTGGCACCCCCGCCTC
ATCACAACACTATCGGAGCACAAACATACACCCAGAGGCACCCTTTGAAG
CATCAGAATTGAGGTATGCAAGGGGCAAGGGTGGTACCTTCTCTTGGGGG
AGATTGTGTGATGCAGAGAGTGGAGTTACCCTGGAGCTAAGTAGACCAGT
TTGGAAGTGCATGATTGTCCAAGACCCTTCCTCTCAATCGTTGGCAAATG
ACAAGGAAACCAAGTCCTGGAATGCAGAGGAAAATGTACTAGATGATTCT
GAGCAGTGCTTGGAACAATGTGTTATGGGAGAGGGAGATAGGAGGGAATG
TGGTGAGAATAGATTTCCAGCTATTGTTACACATCCAACAACTTTTGGTG
ATGGTATTGGTAGCAATTCAGAATATTTCACTGATGGTCAAGCTTCAAAG
ACAAACTTCACATGTGGGCAAGATTCCAGCAACAGTGTTACTGAGTTTTC
CTCAGACATTGTGAAATCACCTCCTACACCTCGTGCAGTGGATGGTCTCT
TCTCTCCAATGTGGGTACATTTGCCCCCGAAGTCTATTTTTACCATCCAT
CACTCACCTAGGAGAGCACCACCACCATCTTCTCAAACAAAAGCAAAATG
GGAGACTGATTCAGGGTGTTCAAGTACTAGTTTGAGAAGTGCTGGAGGGG
ATGTGGGGCCATCACCAAGGCCAAGGGGAGTTTCATCAGCAAAGGATTCC
AGCAGTGTCCTGTCTTCAGCAATGAATAAAAGGGAGCAAAGTTCCTCTAT
GGGTTTGACAGAGGAATGTCCCTTCTCGTTTGCATCAGGAACTGTGACTG
AGGAGATCTGGGGAAAGATGATGCAAGTGCAAGCACATAGGGATCGATAT
CTAAGGTAAGCTATGGACCCCAAACCTATTGTTGTAGAGTGGTTCCCCCC
CCAACAACTGCGATACATTGGTAGTACATACAAACATGTCTGGTAATTAT
GAGGCACTCAGACCTGGAGTGCACTTGTCAATTTGCTGCTAAAGTTTTCC
AAGTCCTTTTTATGTCATAGTTCTCACAACATCTTGTTCATGGGAGTTGG
CTCAGTCTCAATTGTACCTTGAGCAACCATGAAATGGATTGATTCTTTTC
TTCAGAACCAAATGGTGTCATCATGACTTCAACGGCAATCTCCATAGTCA
GTGTACATATCGAGGGCTCAATTATACCTTGAGCAACTATGAAATGGATT
GATTCTTTTTTTCAGAACCAAATGGTGTCATCATGACTTCAATGACAATC
TCCATAGTCAGTGTACATGTCGAGGGCTGAATGTACGTACTCACTATCTC
ACATCACAATATGGTACCATCATGCTTACAGCCAGCGCTCTCCATAATGT
AGCAAATGAAGATATTGTGTAGCAAAATGGAACATATCGCATTGACAATG
GCGAGGATCCAGGGGGACATAAAGTCGTCCATAAAAGGTTCTGTTATTCG
CGGAATCCACATGTCCGGTGAGGAGTTGTGAGATATCTTTCTTCTTTGAA
GTATTGTGATGTGTGTTGTGTATATATGATAATAATACTTGGACTTGTGC
TTAGAGGCCTATTGTTTTGCTGCCTACATTTGTGTAGGAGATGGGGCCAA
TGATGAGGGCCGAAAGATGTGGCAGACCTCCCCTTGATACTGCCTACAAG
CAGGATGCTTCAAGAATGCAGAACAGTGCCTGGAGAGTGCTGCAGAAGAA
GCAAATTTATATCTGCAACATACAGAGGTCTCTACATAATGTAGATACAG
AGGAATTTTTATAGGATGTTGGACTGTCTTTTGATTAAAAAAAATAATCT
TATAACACAGCTTAAAGCAATAGAAAGATAAAGGAGTACTTTGAGCACAA
ATGGTTTGCAGCACCTTCTCGCAAAACCTAAATCTCCCTTATCACCCGAT
GCTCAGAATTCGACAGGTGCTAGCTACTACAGCAAGTACGCTTGACTATG
GTTGAGTGCGCTTCAATGTAACACTCCAGTGTATGAGAGACAGGAGTGTC
TACAACCTACCCTATTTCCTCTCTTCCCTCTTCTTCCTCCTTTCCTTCCA
CAGGCAAGTGGCTGAAATGGTACAGGATGAGCAGCGACAAGATTCTCAGA
GGAACAAGGAACTGAGGAGGGTATCCAAGTTCCCCCAGAGGTGTGAGCGG
TTGCGACTGCGGCAGAAGCACGAGCGCCAAGAGCGACGCACCATGATCAA
CAGGATCAGGAGAGACATTGAGGTGCGTGTAGACTCCTTACTCTCTGGCC
TTGAGAGCTTTTGGTGTTTCTTACTCGAGGGCATGATGAGTGACATGCAT
GGTTTTGCACTAATGTTTTGTTTGGAAGGGTGTCCACTGTGTTTTCTTGA
GTCCTTTGCCAGTGGGCAGTGCTGCTGCCAGTTGCTGGCTTTGTTGCGTT
CGGTTTTTTCAGCATTTGGGTCACCTCAGATCGTGCTGTTTTGCTAGAGA
AATGGGACTCTAAGGGGGGGACCATTATCTCCTCCATGTGGATTCTTTTA
TTGGCTACCTACACTTATTGTTCAGGGTGATCTTGAGGTAGGTAGGTGTG
GGTTTATGTGATAATAAGTTCAATCCAATGTCCTCAGCAATAAATACAGC
GAGGTATTGTGGCCAGCGGGAGGACTTTACTGCCATCCATTGTGTGATGC
CACTACACTCCTTAACAGCATCAGTTCCCAATCTGCCTGGAGATGAGTGT
TGATGGTGCCATGAATTGTTGCTGTTCAATTGCTACGATTTGATTACATT
GCGATCAATTGAAACTTAAGGGAAAAATTTGGGTTGGTTGTTTGCTCTAA
CGTATGTGTTCTCTGCTCACCGAGCCTGCGGCACTGTGCAAGCCTTCCAA
TACAATGTTTCTAGCCGATTTTACTTATTCTTAAATGCCCTTTTAATTTA
CAACACTTAAGTATTGATATTTCAGAAAGAATATATATATATATATCTTG
TCCTGCTCAATACCACCCACCTACCCTATTTCACCATGCCACTTCCTGAC
AATGTTAGTGTTAAGTTGAATTCAGTACAATATATCTACTATACAAAGCA
GTGCAACAAAGGTGGAGTCTTAGTTTTTACCTCAATATCCAAATTGTATA
ATAATTTTTTCTTATGCCTTCTGCTTGAAACGACCCTTTCCTTACTCTGA
TTCCACAGCTCATCATGGTTCAAGAGACATCTCGACTTGGTCTCATCCGA
TAGCTGGAAGAGTCACTTTCCAGAAGAAAATTACATAATGTTGGTCACAT
ATTGTTGACAGTCTCAGACACCGACCTGTACATGCTGACAGCACCCCATC
TGGTTCATTTAAAGTACACATTGTCTTCATACTTCAAGGAGGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig980:5631..9724+

>mRNA_C-tenellus_contig980.1.1 ID=mRNA_C-tenellus_contig980.1.1|Name=mRNA_C-tenellus_contig980.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1368bp|location=Sequence derived from alignment at C-tenellus_contig980:5631..9724+ (Choristocarpus tenellus KU2346)
ATGTTGTATGCAGTTACTACCTTGTCTAGATATGTAGTTTTCCTCCCTGG
ACTTCAGTGCCACCAACGAAATCGAGAAACCTATACTTTGGCTAGAGCTC
TACTAGTACACCGCATTTCCAATGCAAGCAGGTGGGATACGGCAAAGACG
CCAACCCAAGGGCGACCTGAAAGCTGTGCAATACTAAGTGGTAGAAATAT
GGGTCACGGAACAACATCTGGCATTCTTCAAGCAGTTGAATCCGCCTCCA
ACTTGACACTAGAAGACACTTTCCCTCCAAACTCTGGCACCCCCGCCTCA
TCACAACACTATCGGAGCACAAACATACACCCAGAGGCACCCTTTGAAGC
ATCAGAATTGAGGTATGCAAGGGGCAAGGGTGGTACCTTCTCTTGGGGGA
GATTGTGTGATGCAGAGAGTGGAGTTACCCTGGAGCTAAGTAGACCAGTT
TGGAAGTGCATGATTGTCCAAGACCCTTCCTCTCAATCGTTGGCAAATGA
CAAGGAAACCAAGTCCTGGAATGCAGAGGAAAATGTACTAGATGATTCTG
AGCAGTGCTTGGAACAATGTGTTATGGGAGAGGGAGATAGGAGGGAATGT
GGTGAGAATAGATTTCCAGCTATTGTTACACATCCAACAACTTTTGGTGA
TGGTATTGGTAGCAATTCAGAATATTTCACTGATGGTCAAGCTTCAAAGA
CAAACTTCACATGTGGGCAAGATTCCAGCAACAGTGTTACTGAGTTTTCC
TCAGACATTGTGAAATCACCTCCTACACCTCGTGCAGTGGATGGTCTCTT
CTCTCCAATGTGGGTACATTTGCCCCCGAAGTCTATTTTTACCATCCATC
ACTCACCTAGGAGAGCACCACCACCATCTTCTCAAACAAAAGCAAAATGG
GAGACTGATTCAGGGTGTTCAAGTACTAGTTTGAGAAGTGCTGGAGGGGA
TGTGGGGCCATCACCAAGGCCAAGGGGAGTTTCATCAGCAAAGGATTCCA
GCAGTGTCCTGTCTTCAGCAATGAATAAAAGGGAGCAAAGTTCCTCTATG
GGTTTGACAGAGGAATGTCCCTTCTCGTTTGCATCAGGAACTGTGACTGA
GGAGATCTGGGGAAAGATGATGCAAGTGCAAGCACATAGGGATCGATATC
TAAGGCAAGTGGCTGAAATGGTACAGGATGAGCAGCGACAAGATTCTCAG
AGGAACAAGGAACTGAGGAGGGTATCCAAGTTCCCCCAGAGGTGTGAGCG
GTTGCGACTGCGGCAGAAGCACGAGCGCCAAGAGCGACGCACCATGATCA
ACAGGATCAGGAGAGACATTGAGCTCATCATGGTTCAAGAGACATCTCGA
CTTGGTCTCATCCGATAG
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