mRNA_C-tenellus_contig9751.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9751.2.1
Unique NamemRNA_C-tenellus_contig9751.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9751.2.1 vs. uniprot
Match: A0A835ZLF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLF5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.590e-9
Identity = 22/30 (73.33%), Postives = 29/30 (96.67%), Query Frame = 3 
Query:  225 LDRYVLCQDCGGLGVRKELYNHMVLEKTCE 314
            LD+YV+C++C GLG+RKELYNHMVLE++CE
Sbjct:   75 LDKYVICKECSGLGIRKELYNHMVLERSCE 104
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9751.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZLF5_9STRA2.590e-973.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9751contigC-tenellus_contig9751:1243..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size317
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.1206775-CDS-C-tenellus_contig9751:1242..15571680790199.1206775-CDS-C-tenellus_contig9751:1242..1557Choristocarpus tenellus KU2346CDSC-tenellus_contig9751 1243..1557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9751.2.1prot_C-tenellus_contig9751.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9751 1243..1557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9751.2.1

>prot_C-tenellus_contig9751.2.1 ID=prot_C-tenellus_contig9751.2.1|Name=mRNA_C-tenellus_contig9751.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
SSLSTLKSEELPEGKGESPVAAATRGREPHANIKEILPCRRAGTETLHRR
SAWYPFLHSSPAPPNYCPLLCTQKGLTDTFSARIAGGWACERSSTTTWCS
RRPAK
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mRNA from alignment at C-tenellus_contig9751:1243..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9751.2.1 ID=mRNA_C-tenellus_contig9751.2.1|Name=mRNA_C-tenellus_contig9751.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=316bp|location=Sequence derived from alignment at C-tenellus_contig9751:1243..1558+ (Choristocarpus tenellus KU2346)
TCCTCCCTTTCTACGTTGAAGAGCGAAGAACTTCCTGAAGGAAAGGGAGA
GAGCCCTGTGGCTGCCGCTACCCGGGGTAGGGAACCTCATGCCAATATAA
AAGAAATTCTTCCCTGTCGAAGAGCAGGCACAGAAACATTGCACAGGAGA
AGTGCCTGGTATCCATTCCTCCATTCCTCCCCCGCTCCACCAAATTATTG
CCCCCTCCTTTGTACTCAGAAAGGCTTGACAGATACGTTCTCTGCCAGGA
TTGCGGGGGGCTGGGCGTGCGAAAGGAGCTCTACAACCACATGGTGCTCG
AGAAGACCTGCGAAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9751:1243..1558+

>mRNA_C-tenellus_contig9751.2.1 ID=mRNA_C-tenellus_contig9751.2.1|Name=mRNA_C-tenellus_contig9751.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig9751:1243..1558+ (Choristocarpus tenellus KU2346)
TCCTCCCTTTCTACGTTGAAGAGCGAAGAACTTCCTGAAGGAAAGGGAGA
GAGCCCTGTGGCTGCCGCTACCCGGGGTAGGGAACCTCATGCCAATATAA
AAGAAATTCTTCCCTGTCGAAGAGCAGGCACAGAAACATTGCACAGGAGA
AGTGCCTGGTATCCATTCCTCCATTCCTCCCCCGCTCCACCAAATTATTG
CCCCCTCCTTTGTACTCAGAAAGGCTTGACAGATACGTTCTCTGCCAGGA
TTGCGGGGGGCTGGGCGTGCGAAAGGAGCTCTACAACCACATGGTGCTCG
AGAAGACCTGCGAAG
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