mRNA_C-tenellus_contig9672.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9672.4.1
Unique NamemRNA_C-tenellus_contig9672.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9672.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9672contigC-tenellus_contig9672:5368..5478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4D5
PFAMsBeach,DUF223,DUF4704,ELMO_CED12,Laminin_G_3,PH_BEACH,Rep_fac-A_C
Model size111
Max annot lvl2759|Eukaryota
KEGG koko:K22262
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000492
EggNOG OGsKOG1787@1|root,KOG1787@2759|Eukaryota
Descriptionplatelet formation
Cds size111
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.9991431-CDS-C-tenellus_contig9672:5367..54781680790194.9991431-CDS-C-tenellus_contig9672:5367..5478Choristocarpus tenellus KU2346CDSC-tenellus_contig9672 5368..5478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9672.4.1prot_C-tenellus_contig9672.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9672 5368..5478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9672.4.1

>prot_C-tenellus_contig9672.4.1 ID=prot_C-tenellus_contig9672.4.1|Name=mRNA_C-tenellus_contig9672.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=37bp
MSVGDLDVIKAEEEKIREAKMTAGQLKAELDSLGVNY
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mRNA from alignment at C-tenellus_contig9672:5368..5478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9672.4.1 ID=mRNA_C-tenellus_contig9672.4.1|Name=mRNA_C-tenellus_contig9672.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=111bp|location=Sequence derived from alignment at C-tenellus_contig9672:5368..5478+ (Choristocarpus tenellus KU2346)
ATGTCGGTAGGTGATCTTGACGTCATCAAGGCCGAGGAAGAGAAGATTAG
AGAGGCGAAAATGACTGCAGGACAGCTGAAGGCTGAGCTGGACTCTCTTG
GTGTGAATTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9672:5368..5478+

>mRNA_C-tenellus_contig9672.4.1 ID=mRNA_C-tenellus_contig9672.4.1|Name=mRNA_C-tenellus_contig9672.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=111bp|location=Sequence derived from alignment at C-tenellus_contig9672:5368..5478+ (Choristocarpus tenellus KU2346)
ATGTCGGTAGGTGATCTTGACGTCATCAAGGCCGAGGAAGAGAAGATTAG
AGAGGCGAAAATGACTGCAGGACAGCTGAAGGCTGAGCTGGACTCTCTTG
GTGTGAATTAC
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