mRNA_C-tenellus_contig9655.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9655.1.1
Unique NamemRNA_C-tenellus_contig9655.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9655.1.1 vs. uniprot
Match: D8LD13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD13_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-20
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 LQGHCCTDVCCSMICTPCMTCQVLGETEDRGSVVDRWSLNTHRPAFEQPWKFGLANYCEDCRHC 192
            ++GHCC D+ CS++C PC+TCQ+LGETE RG V D W+  + R   EQPWKFGL N  +DC  C
Sbjct:  123 IKGHCCADILCSLVCAPCVTCQLLGETEKRGCVYDSWNDQSARSRREQPWKFGLFNCLDDCTTC 186
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD13_ECTSI1.380e-2056.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9655contigC-tenellus_contig9655:181..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size207
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.0318565-CDS-C-tenellus_contig9655:180..3871680790194.0318565-CDS-C-tenellus_contig9655:180..387Choristocarpus tenellus KU2346CDSC-tenellus_contig9655 181..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9655.1.1prot_C-tenellus_contig9655.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9655 181..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9655.1.1

>prot_C-tenellus_contig9655.1.1 ID=prot_C-tenellus_contig9655.1.1|Name=mRNA_C-tenellus_contig9655.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=69bp
LQGHCCTDVCCSMICTPCMTCQVLGETEDRGSVVDRWSLNTHRPAFEQPW
KFGLANYCEDCRHCERKK*
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mRNA from alignment at C-tenellus_contig9655:181..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9655.1.1 ID=mRNA_C-tenellus_contig9655.1.1|Name=mRNA_C-tenellus_contig9655.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=207bp|location=Sequence derived from alignment at C-tenellus_contig9655:181..387+ (Choristocarpus tenellus KU2346)
CTCCAGGGACACTGCTGTACTGATGTGTGCTGTAGTATGATATGCACACC
TTGCATGACGTGCCAGGTGCTGGGGGAGACGGAAGATAGGGGATCTGTGG
TGGACCGTTGGAGCTTGAACACACATCGACCTGCCTTTGAGCAGCCATGG
AAATTTGGTCTAGCCAATTACTGCGAGGACTGCCGCCACTGTGAGAGAAA
AAAATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9655:181..387+

>mRNA_C-tenellus_contig9655.1.1 ID=mRNA_C-tenellus_contig9655.1.1|Name=mRNA_C-tenellus_contig9655.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=207bp|location=Sequence derived from alignment at C-tenellus_contig9655:181..387+ (Choristocarpus tenellus KU2346)
CTCCAGGGACACTGCTGTACTGATGTGTGCTGTAGTATGATATGCACACC
TTGCATGACGTGCCAGGTGCTGGGGGAGACGGAAGATAGGGGATCTGTGG
TGGACCGTTGGAGCTTGAACACACATCGACCTGCCTTTGAGCAGCCATGG
AAATTTGGTCTAGCCAATTACTGCGAGGACTGCCGCCACTGTGAGAGAAA
AAAATAA
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