mRNA_C-tenellus_contig9498.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9498.2.1
Unique NamemRNA_C-tenellus_contig9498.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9498.2.1 vs. uniprot
Match: A0A6H5KAU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.210e-7
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   49 VGSITGSHVCRACGGPRFKRNVCARCGANANDVRG 153
            +  + G  VCRACGGPRF R VCA+CGANAN  RG
Sbjct:  210 MAELGGGRVCRACGGPRFGRTVCAKCGANANSWRG 244
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BLAST of mRNA_C-tenellus_contig9498.2.1 vs. uniprot
Match: D7FMH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.010e-7
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   49 VGSITGSHVCRACGGPRFKRNVCARCGANANDVRG 153
            +  + G  VCRACGGPRF R VCA+CGANAN  RG
Sbjct:  405 MAELGGGRVCRACGGPRFGRTVCAKCGANANSWRG 439
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9498.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAU5_9PHAE2.210e-765.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMH1_ECTSI3.010e-765.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9498contigC-tenellus_contig9498:5028..5288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790179.417482-UTR-C-tenellus_contig9498:5027..51141680790179.417482-UTR-C-tenellus_contig9498:5027..5114Choristocarpus tenellus KU2346UTRC-tenellus_contig9498 5028..5114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790179.430364-CDS-C-tenellus_contig9498:5114..52881680790179.430364-CDS-C-tenellus_contig9498:5114..5288Choristocarpus tenellus KU2346CDSC-tenellus_contig9498 5115..5288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9498.2.1prot_C-tenellus_contig9498.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9498 5115..5288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9498.2.1

>prot_C-tenellus_contig9498.2.1 ID=prot_C-tenellus_contig9498.2.1|Name=mRNA_C-tenellus_contig9498.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=58bp
AVFEVNGPQKSDYRDEVGSITGSHVCRACGGPRFKRNVCARCGANANDVR
GMNSPTT*
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mRNA from alignment at C-tenellus_contig9498:5028..5288-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9498.2.1 ID=mRNA_C-tenellus_contig9498.2.1|Name=mRNA_C-tenellus_contig9498.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=261bp|location=Sequence derived from alignment at C-tenellus_contig9498:5028..5288- (Choristocarpus tenellus KU2346)
GCAGTGTTTGAGGTCAATGGCCCTCAAAAGAGTGACTACAGGGACGAAGT
TGGATCCATAACTGGGAGCCACGTTTGTAGGGCCTGTGGGGGTCCTCGAT
TCAAGAGGAATGTCTGTGCTCGTTGTGGAGCAAATGCAAACGATGTCAGG
GGTATGAACAGTCCCACCACTTGAGCATTGAGTCAGTGTGAGCATCAAGA
GTGTGGATGGGGGCAGGGTGCAGTTGAATCGATGGTTCAAGGTGTATGTG
CGAGAAGATTA
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Coding sequence (CDS) from alignment at C-tenellus_contig9498:5028..5288-

>mRNA_C-tenellus_contig9498.2.1 ID=mRNA_C-tenellus_contig9498.2.1|Name=mRNA_C-tenellus_contig9498.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=174bp|location=Sequence derived from alignment at C-tenellus_contig9498:5028..5288- (Choristocarpus tenellus KU2346)
GCAGTGTTTGAGGTCAATGGCCCTCAAAAGAGTGACTACAGGGACGAAGT
TGGATCCATAACTGGGAGCCACGTTTGTAGGGCCTGTGGGGGTCCTCGAT
TCAAGAGGAATGTCTGTGCTCGTTGTGGAGCAAATGCAAACGATGTCAGG
GGTATGAACAGTCCCACCACTTGA
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