mRNA_C-tenellus_contig949.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig949.6.1
Unique NamemRNA_C-tenellus_contig949.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig949.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig949contigC-tenellus_contig949:9696..11126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size552
Hectar predicted targeting categoryother localisation
Exons3
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790179.0752933-UTR-C-tenellus_contig949:9695..98841680790179.0752933-UTR-C-tenellus_contig949:9695..9884Choristocarpus tenellus KU2346UTRC-tenellus_contig949 9696..9884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790179.0879474-CDS-C-tenellus_contig949:9884..99531680790179.0879474-CDS-C-tenellus_contig949:9884..9953Choristocarpus tenellus KU2346CDSC-tenellus_contig949 9885..9953 +
1680790179.0973535-CDS-C-tenellus_contig949:10291..103471680790179.0973535-CDS-C-tenellus_contig949:10291..10347Choristocarpus tenellus KU2346CDSC-tenellus_contig949 10292..10347 +
1680790179.1193442-CDS-C-tenellus_contig949:10888..111261680790179.1193442-CDS-C-tenellus_contig949:10888..11126Choristocarpus tenellus KU2346CDSC-tenellus_contig949 10889..11126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig949.6.1prot_C-tenellus_contig949.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig949 9885..11126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig949.6.1

>prot_C-tenellus_contig949.6.1 ID=prot_C-tenellus_contig949.6.1|Name=mRNA_C-tenellus_contig949.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=121bp
MRSQPVNSRRENNVRGYRLAGTLMGGAGGNSKAPYQLNINSEERERRCIQ
NRSCAATTSEDRESDAISNSKNTNMEKDYSDNCSDIKWACTSGRVDVSIR
HEDKELGLGSNEEISGKGKGR
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mRNA from alignment at C-tenellus_contig949:9696..11126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig949.6.1 ID=mRNA_C-tenellus_contig949.6.1|Name=mRNA_C-tenellus_contig949.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1431bp|location=Sequence derived from alignment at C-tenellus_contig949:9696..11126+ (Choristocarpus tenellus KU2346)
ACTTCTCAGAATGGCGCCTCTAAGTAGTTCTGATCATGATTGCGTTCGCC
TCCCATATCAGATTCTGGAGTCCGAGCAATAAATTGAAGCGTTTGGACGA
ACTACGAGCTCAATATTTTCCACAGCTGCGCCATCTTCGCTTACAAACAC
GACGATCTACACCAAGGAGAACTACACAGAGCTGCCCAAATGAGATCTCA
ACCTGTCAATTCTAGAAGGGAGAATAACGTCAGGGGGTACCGGCTAGCAG
GCACATTAGTGAGAGATCCCTCTAAATCCTGACATGGCAATGTCGTGTTC
CTCTCCCTTTTTTCCTTCCTCCAGACCCGCAACTCACCCCCCTCCCTCCT
CTGTCATGGAAAATTTTGTGCGAAGCATGTTGCCAGTATCTTCAGGTGCT
GCCTCGTTGTTACCAAGTTCTACGACATTTTACTGATAGTCAAGGGATGA
TCGCACATCCAATCCCTTTCGAACAAGCCGGGAAGACAATTAATAATTGA
GCACGGAAATAAGTAGTACCACTCTTACGCAATCTTTCTGTCTCCTCACT
CTCTCATACTCACAAGTCTCCGTATATCTCGTCGTTCTTCTTGCAGATGG
GCGGTGCAGGAGGTAACAGTAAGGCTCCATACCAGCTCAACATCAACTCT
GAGTGAGTTGAATCTCGAGATTGTTTCCAAGGGATTTACTACATGTATAA
TACCATCTGTAGGTCTCTCTCTCTGTACTTGGAGTATAACTACCCTTTCG
TTAGAGATACACGGCACCCTCCGAAATCGCCAGCAGTTAGTATTTTTGCT
CATGTACAATCTGTAGGGTACATTGATTGTCTATCCAAATTAGAACTCAC
AATTCCAACTAAGCTTGCCTATCCACCACTGACTTCTGAAGTCTTATCCT
AGACTTGTTGAAGGCCACTGCCTACATGCACTGTAGTAGTGAAAATATCG
CCTGTACATACACCTCCCTTCAATTCTTGACAAAGATTTTTTGCTCCTGT
ATTGCGCACAAACCTGCCTGTTTTTTTCTTCCCAACCTCAGACCCATATA
AGAATGTTTGGAGTGGGGAGAATTAGACTCACATAAAGTGCAAAGGAGTA
GTATGATAACCCTTGCATCTTGACCTGCAAACTCTACGTGTATAACATGG
TTATTGTACCTCAATGCATTCCACATTCCCCTTTGTAATATAGAGAACGA
GAGAGACGGTGCATCCAGAACCGTTCTTGTGCTGCCACCACAAGTGAAGA
TAGGGAAAGTGATGCCATCAGCAATAGCAAAAACACTAACATGGAAAAAG
ACTACAGTGATAACTGTAGTGACATCAAATGGGCTTGCACCAGTGGCAGA
GTTGATGTCAGTATACGCCATGAAGATAAAGAGCTCGGCCTGGGCAGCAA
TGAGGAGATCAGTGGTAAGGGGAAAGGCAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig949:9696..11126+

>mRNA_C-tenellus_contig949.6.1 ID=mRNA_C-tenellus_contig949.6.1|Name=mRNA_C-tenellus_contig949.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=363bp|location=Sequence derived from alignment at C-tenellus_contig949:9696..11126+ (Choristocarpus tenellus KU2346)
ATGAGATCTCAACCTGTCAATTCTAGAAGGGAGAATAACGTCAGGGGGTA
CCGGCTAGCAGGCACATTAATGGGCGGTGCAGGAGGTAACAGTAAGGCTC
CATACCAGCTCAACATCAACTCTGAAGAACGAGAGAGACGGTGCATCCAG
AACCGTTCTTGTGCTGCCACCACAAGTGAAGATAGGGAAAGTGATGCCAT
CAGCAATAGCAAAAACACTAACATGGAAAAAGACTACAGTGATAACTGTA
GTGACATCAAATGGGCTTGCACCAGTGGCAGAGTTGATGTCAGTATACGC
CATGAAGATAAAGAGCTCGGCCTGGGCAGCAATGAGGAGATCAGTGGTAA
GGGGAAAGGCAGG
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