mRNA_C-tenellus_contig936.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig936.1.1
Unique NamemRNA_C-tenellus_contig936.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig936.1.1 vs. uniprot
Match: D7G5C7_ECTSI (Chorein N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.860e-15
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 RYLMPFELPHKDVSIAWDLISRKCLIWKSQLGGVDR---EEEEATFRNLSPNVLQALWSIQLQMEAYLPRRLCARCRTMA 231
            RYLMP+ELP +DV  AW LI+RK   W+ +  G  +   +EE A    L P VLQALWSIQLQ++A LP R+CA  R MA
Sbjct:  551 RYLMPWELPQEDVDKAWGLINRKTWRWELRGAGGFKLAIDEERAEQGQLDPAVLQALWSIQLQLDAQLPHRICAFARRMA 630
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C7_ECTSI1.860e-1553.75Chorein N-terminal domain-containing protein n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig936contigC-tenellus_contig936:4155..6138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size245
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.4735494-UTR-C-tenellus_contig936:4154..41631680790172.4735494-UTR-C-tenellus_contig936:4154..4163Choristocarpus tenellus KU2346UTRC-tenellus_contig936 4155..4163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.4861274-CDS-C-tenellus_contig936:4163..42681680790172.4861274-CDS-C-tenellus_contig936:4163..4268Choristocarpus tenellus KU2346CDSC-tenellus_contig936 4164..4268 +
1680790172.4953814-CDS-C-tenellus_contig936:5271..53131680790172.4953814-CDS-C-tenellus_contig936:5271..5313Choristocarpus tenellus KU2346CDSC-tenellus_contig936 5272..5313 +
1680790172.508297-CDS-C-tenellus_contig936:6051..61381680790172.508297-CDS-C-tenellus_contig936:6051..6138Choristocarpus tenellus KU2346CDSC-tenellus_contig936 6052..6138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig936.1.1prot_C-tenellus_contig936.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig936 4164..6138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig936.1.1

>prot_C-tenellus_contig936.1.1 ID=prot_C-tenellus_contig936.1.1|Name=mRNA_C-tenellus_contig936.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=78bp
MPFELPHKDVSIAWDLISRKCLIWKSQLGGVDREEEEATFRNLSPNVLQA
LWSIQLQMEAYLPRRLCARCRTMACSRM
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mRNA from alignment at C-tenellus_contig936:4155..6138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig936.1.1 ID=mRNA_C-tenellus_contig936.1.1|Name=mRNA_C-tenellus_contig936.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1984bp|location=Sequence derived from alignment at C-tenellus_contig936:4155..6138+ (Choristocarpus tenellus KU2346)
AGGTACCTCATGCCATTTGAGCTTCCTCACAAAGATGTGAGTATAGCATG
GGATCTCATTAGCCGCAAGTGTCTGATATGGAAGAGTCAACTTGGGGGTG
TAGATCGCGAGGAGGTGAGTGCCTGTGAGTGGGTTTGCTTCTGTACATTT
ATTACTTTTTGGATGCATGCATGTGTATGTGTGTGTGTGTGTATGTGTGT
ATGCGTGTGTGACAAGTTGAAGGATAGGGGGCAATAGTTGGGGGGTGGAG
GGGAGGTTAGATGTTCTGTTTTCATGCAATGAGTTCATTTTTTTGTCCTA
TCTGAGGTGCTGTACTTGTAGTACTTGATGTGATATTAGGACTTGAGTTT
TGTACTTGTGGATCTGGAGTACTACCGTGGAACAAATGAGACTGTCTTGA
TTGATGAAGGTATGGCATGACTGAGAAGGGTACAAGAACCAGCACTACAA
ACCGTGCTAGTTACTAGGGACAAAGGATGGTGAAGACTACCACTTCTCAC
CACTAAAATACTGTAAACTGAGTGCAGTAATAGTACTCATTTCCACATTT
ACTCTACAGTACAACGGCATAAAACACACACACACACACACACACACACA
CACACACATGTTTCAAATTGGACAAATGGGGTATTCAAAATTGCTGGAAA
CCTAACACTAATCCCAACCTCCATACAAACTTTGAAATCGTAGGGTAAGT
CTCTCTCTTTCACCATGGAGCTTTTGGGGAGTATCGCCTCCTTGTGATCT
GGAATACTCATTGATGGTCATACATTAACTTTGGAGATATTTTGTCTCGA
AGGTGTTCTGCCACTTACCATCGATGAGTGCAAAGGCCACACACACACCC
CACCCCTGTAGACATTTTTCTCGACCAATAATGGAATGTATCCACTCCAG
ACGGCACTAAAACAAGAATTGATATGTGTTTGTACCTCTTGTTTGAATGG
AATATTTTTTACTATCTATACATCAGCTTTTTGCCCTAGCCTTAAACCCA
TATCCAACAATGATTAAAAATATCATACATAGAGAGTCACTCAAACACGA
GTTGCTGACTCTACAGTATAAATACCATTTATCCCTTCCTCTTTTCCACA
TTTCCAAAACACCTCAGGAGGAAGCGACTTTCAGGAACCTTTCTCCAAAC
GTTTTGCAGGTGATGCCAGGATGTCAGAGTGTGTAGTGTATGTCTGTGTG
TGTTTGATTGTTCTCCTCACACAGTGTTAGGGTGATTCCTTGAGGTGTTT
TGTGAACTCCTTTCTACTTGATATTGGCTTGTAAATGCATTCACCTCTTG
GCAACACATGACTCCTGTGTGGAGATGGGGGTTGGGAGGGGGTGAAGTGC
CCATCCAAAGCTTTTTTCTAGTGTTGTGAATCATCACGATTGAATTGCTG
TGATTGGATGAGATTGTCGTAAATTGAAACCGAAAATTGAGGGAATAATT
TCGATCGATATGTTTTCCGTCAAGTGCACGTATTGCTGGTGGAGCTCAGT
GCTTCACGTGCCTTCATAATCACATCTTGTTGGGAGAAAATCTTCTCACA
TATTACTTCATTGTGAGGAATATTGCAGATCCAGCTTAGTTTCCATCGAA
GGGTGCGAAATAATAGTATCATTGCCGTGCTTACTCATTTTTTCTTTAGC
ATGTGTGTTTGGAAACGATTCTATAACGTGTTTTACTCTTCCACCTCCTG
TTCCAGTCTTCTTAGATGTGAATATCCAAGATTTTAAGTATGTGCTTTGA
AGTAGCTTGTAATCCCAACCAAATAAGTGCTTCTTGTGGAACTTACTGTC
TGGCATTTCACCACCCCCGCCTCCCCATTTCTGCCCCCATCCTTTACTCA
ATTAACCCACCTACCAACCAGCCCATCCCCCCCAATGATTGCAAAAGGCG
CTGTGGTCAATCCAACTTCAGATGGAGGCATACCTCCCTCGGAGACTTTG
TGCACGCTGCAGGACCATGGCCTGCTCACGCATG
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Coding sequence (CDS) from alignment at C-tenellus_contig936:4155..6138+

>mRNA_C-tenellus_contig936.1.1 ID=mRNA_C-tenellus_contig936.1.1|Name=mRNA_C-tenellus_contig936.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=234bp|location=Sequence derived from alignment at C-tenellus_contig936:4155..6138+ (Choristocarpus tenellus KU2346)
ATGCCATTTGAGCTTCCTCACAAAGATGTGAGTATAGCATGGGATCTCAT
TAGCCGCAAGTGTCTGATATGGAAGAGTCAACTTGGGGGTGTAGATCGCG
AGGAGGAGGAAGCGACTTTCAGGAACCTTTCTCCAAACGTTTTGCAGGCG
CTGTGGTCAATCCAACTTCAGATGGAGGCATACCTCCCTCGGAGACTTTG
TGCACGCTGCAGGACCATGGCCTGCTCACGCATG
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