mRNA_C-tenellus_contig9350.2.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: D8LLG8_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG8_ECTSI) HSP 1 Score: 211 bits (536), Expect = 7.830e-59 Identity = 155/382 (40.58%), Postives = 191/382 (50.00%), Query Frame = 2 Query: 302 GSDDGVL-TAIITGANRGLGFALAERMSLLG-HRVVLTCRGEDEGRAALNLLRERSLGDR------------LSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCL-----------EGCTSAVLLTTLAVNFYGALRVMDACLPS----------------------------MCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCE-------------EEIAFGPTPAYSLSKAAANAVVRTEGDALMTTS------------------GVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQ-DVYPGGHFYRDGIRIPW 1192 G D G+L I+TGANRGLGFA+A+RM LG +RVVL CR E EGR AL LR + R SF+PLDV +SV FR CV G+LGGRVD++FNNAGVC + +L TLAVNF+GAL V++AC+P+ M + +VVW++SGDGELC LGS R LL A+S + SP D+ A I+ N EE+AFGPTPAYSLSKAA NA VRT + + GV L AVCPGDVLTRM S EE ++G++ +SP AA VV +AL + P G FYR G I W Sbjct: 47 GDDGGILRNVIVTGANRGLGFAIADRMLKLGSYRVVLACRNEQEGRDALERLRGKQQQRRQRQYGTIATNFLASFFPLDVTCPRSVEVFREDCVNGHLGGRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLKPPTVVWISSGDGELCFLGSKWRGLLAEAQSLEDVKSPLSDLLATATDTITTTSKQNSTAPAGSQQEGEQGQVEEMAFGPTPAYSLSKAAVNAAVRTWAPCIQAPTVPAEAPENTKSRTGVRGGGVRLVAVCPGDVLTRMTSK---EE----MARGDA----VSPEEAAVEVVDLALSSANDIPAGRFYRHGEEIGW 417
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A835YS44_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS44_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.010e-40 Identity = 126/313 (40.26%), Postives = 162/313 (51.76%), Query Frame = 2 Query: 323 TAIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGD-RLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVR-----------TEGDAL-----------MTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQDVYPGGHFYRDGIRIPW 1192 TA++TGA+RGLG A+A + + V+LT R E +G A + L G ++F LDV++ S++ F C+ G + +FNNAGVCL G A L +L VNFYG LRVM+ACLP M + +G VV V+SGDGEL L S L A++ Q DV AA + I+ R A D E+AFG TPAYS+SKA NA VR EG AL T + AVCPGDV T M S + Q +G V+S AA VV +A ++ GG FYR G IPW Sbjct: 48 TALVTGASRGLGLAVATLLVQQDYHVILTARSEADGLKAASDLSAHCQGTGEITFRQLDVSSPDSIKHFATQCLPTLPSGSLTAVFNNAGVCLPGADIATLQYSLGVNFYGPLRVMEACLPFMDE--EGVVVNVSSGDGELLWLNSDIAEALRQAQTVQ-------DVRAAADDILQRA--ALDPGAELAFGATPAYSVSKALLNAAVRCRHGIPYAPDPAEG-ALNAGRASSRGGGSTAQRPAVIAVCPGDVRTLMAS------EEEAQREG-----VLSALEAAAHVVGLATWRERTAGGLFYRYGAVIPW 337
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: R1DJ38_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DJ38_EMIHU) HSP 1 Score: 135 bits (341), Expect = 2.060e-30 Identity = 104/294 (35.37%), Postives = 137/294 (46.60%), Query Frame = 2 Query: 323 TAIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDC----EEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQDVYPGGHFYRDGIRIPW 1192 TA++TGANRG+G A A R++ LG VVL CR E R A L R L D +S C RVD++ NNA VC G V L + N + A LP M + +G+V+ V+SGDGEL L S L GA S E + ++++R D + A GPTPAYS+SKAA N R GDAL GV + A CPGDV TRMCS E +S + A++ + A+ A + + G F+R G IP+ Sbjct: 295 TALVTGANRGIGLATAGRLAELGASVVLACRDESACREAAAALSVRGLAAEPYAASFDAECPRSTSALAAACASL----RVDLLVNNAAVCEPGWGRDVALRSFRTNVLAPATLTRAVLPGMLRRRRGAVLHVSSGDGELVFLSSDLAPRLAGAAS-----------ERELLRLLARLSRGRDGFRFPDRPPAHGPTPAYSVSKAALNRHTRLVGDALPRDGGVWVGAACPGDVRTRMCSCERHEGVASPESAADDLARLAAGALGGXXXEAAARRLE---SGRFWRAGRTIPF 570
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A7S1GWA1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWA1_HEMAN) HSP 1 Score: 125 bits (314), Expect = 6.450e-29 Identity = 103/291 (35.40%), Postives = 145/291 (49.83%), Query Frame = 2 Query: 335 TGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVR-----TEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQDVYPGGHFYRDGIRIPW 1192 TG NRGLG ALA ++ G +V + R + LDV + SV C++G L D++ +NAGVCLEG ++ + VNF+GALR++ A P+M + G G VV ++SG+GEL L S + LL P+++ + +++ + EE+AFGPTP+YS+SKA NA+ R T G T GV AVCPGDV T MC++ +E+ G V+SP AA VV VAL + G F+R IPW Sbjct: 1 TGGNRGLGRALAWELAREGLQVWVAARNXXXXXXXXXXXXXXXXD--VESVQLDVGCDASVGGVAEQCLDGRLPVP-DLLISNAGVCLEGSDRSIFDHAMQVNFFGALRMIRALAPAMRRKG-GCVVNISSGEGELVYLCSRLQELL-----------PSIESVDELCRVMEACIDDAEGGEELAFGPTPSYSVSKAGLNALTRILACSTRGSPHDHTLGV--RAVCPGDVDTAMCTL---DEKDG----------VLSPEQAAIDVVWVALHPEECANGGFFRHRDSIPW 261
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: R1EIL5_EMIHU (DNA ligase (ATP) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EIL5_EMIHU) HSP 1 Score: 130 bits (328), Expect = 3.890e-28 Identity = 96/252 (38.10%), Postives = 121/252 (48.02%), Query Frame = 2 Query: 323 TAIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDC----EEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQS 1066 TA++TGANRG+G A A R++ LG VVL CR E R A L R L D +S C RVD++ NNA VC G V L + N + A LP M + +G+V+ V+SGDGEL L S L GA S E + ++++R D + A GPTPAYS+SKAA N R GDAL GV + A CPGDV TRMCS E +G+ S Sbjct: 6 TALVTGANRGIGLATAGRLAELGASVVLACRDESACREAAAALSVRGLAAEPYAASFDAECPRSTSALAAACASL----RVDLLVNNAAVCEPGWGRDVALRSFRTNVLAPATLTRAVLPGMLRRRRGAVLHVSSGDGELVFLSSDLAPRLAGAAS-----------ERELLRLLARLSRGRDGFRFPDRPPAHGPTPAYSVSKAALNRHTRLVGDALPRDGGVWVGAACPGDVRTRMCSC---ERHEGVAS 239
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A7S2ZT12_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT12_9RHOD) HSP 1 Score: 119 bits (298), Expect = 1.090e-26 Identity = 95/290 (32.76%), Postives = 139/290 (47.93%), Query Frame = 2 Query: 326 AIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQ-QDVYPGGHFYRDGIRIPW 1192 A++TGA RGLG A+ E ++ L H V+LT R ++G + + R F LDV +E+S + V + Y G +DVI NNA VCLE +S+ L L VNF+GA+R + ACL + ++ V+SGDGE + R EG +S + D + + EE+ G P Y +SK A N R + L SG+ + +VCPGDV TRM S ++ SP+ AA+A+ ++ + Y G F+RD I W Sbjct: 8 ALVTGATRGLGLAIVEELAGLNHHVLLTGRDVEKGYVEAGSFQRKGFDVR--FLELDVCDERSAENLALVVRDQY--GALDVIVNNAAVCLEEWSSSALTNCLEVNFFGAVRTV-ACLGQLLAK-DACILNVSSGDGESVWFSTAVRERFEGVQSTNALLDALRDFAEKADAVPP---------EEVVHGEQPTYKVSKFALNCYTRLLHNDL-NESGIRVLSVCPGDVRTRM---------------NPSASR--SPSDAAKAIAELVVGGPSTYQSGSFFRDREVISW 264
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A7S0BP00_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BP00_9RHOD) HSP 1 Score: 117 bits (293), Expect = 5.260e-26 Identity = 96/291 (32.99%), Postives = 144/291 (49.48%), Query Frame = 2 Query: 326 AIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGS-VVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQ-QDVYPGGHFYRDGIRIPW 1192 A++TGA RGLG A+ E ++ L H V+LT R ++G A + + R F LDV +E+S + V + Y G +DVI NNA VCLE +S+ L+ L VN +GA+R + CL + +G+ + +V V+SGDGE L + R E +S +V + ++ + + S +E+ G P Y +SK A N R + L SG+ + AVCPGDV R G+ P+ AA+A+V++ + Y G FYRD I W Sbjct: 8 ALVTGATRGLGLAIVEVLAGLDHHVLLTGRDVEKGCAEAGSFQRKGFDVR--FLELDVCHERSAENLALVVRDQY--GALDVIVNNAAVCLEDWSSSALMDCLEVNLFGAVRTVS-CLGQL--LGEDACIVNVSSGDGESVWLSTAVRERFEKVQSTKVLLDVLRELAEKADSLPS---------QEVVHGEQPTYKVSKFALNCYTRLLHNDL-NESGIRVLAVCPGDV------------RTGMNPSASR-----CPSDAAKAIVELVVGGPSTYQSGGFYRDCEIISW 264
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A7S2XFG2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFG2_9EUKA) HSP 1 Score: 117 bits (294), Expect = 9.310e-26 Identity = 98/307 (31.92%), Postives = 147/307 (47.88%), Query Frame = 2 Query: 323 TAIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGR-AALNLLRE---RSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVLLTTLAVNFYGALRVMDACLPSMCQMGKGS--------VVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQD-----VYPGGHFYRDGIRIPW 1192 T I+TG RGLG+A+AERM+ G+ VV+ R E+ G AA N+ R R +G +S+ LD+ N +S+ +FR C GG VDV+FNNA VCLEG V ++ +N G L +++ + + V+ V+S +GEL L + + + + A D A+ +++ + D E AFGPTP YS+SKAA A+ + + AVCPGDV T M + E + +SPA A++ VV +AL G F+R ++ W Sbjct: 22 TCIVTGGTRGLGYAIAERMARRGYDVVIAGRDENIGNEAATNIQRSISTRGVGT-VSYRKLDLENAESINNFRQWCRRNVEGG-VDVLFNNAAVCLEGSNVEVARSSFQINVIGPLALVEGLMEQQKMDDRRERRKSTQRCVINVSSSEGEL--------GYLHSSLAEALLTASASDDPQAVIRVLESIQNDFDPLLEYAFGPTPFYSVSKAALIALTQVLARRDPDGRSFAVHAVCPGDVSTSMMTP-------------EQESHAVSPAEASEDVVWLALAHPRRADGKLDHGKFWRYREQVEW 305
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A2V8VPQ4_9BACT (Short-chain dehydrogenase n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V8VPQ4_9BACT) HSP 1 Score: 114 bits (286), Expect = 2.710e-25 Identity = 95/302 (31.46%), Postives = 133/302 (44.04%), Query Frame = 2 Query: 326 AIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSA-------------VLLTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQDVYPGGHFYRDGIRIPW 1192 A++TGANRG+GF +++ G +VVL R E +GRAA LR+ L + F PLDV+++ SVRDF + + GRVDV+ NNAG+ ++G L T+ VN YGALRV A LP M + G ++ V+SG G+L + G P Y +SK + NA+ R D L T G+ + A+CPG V T M +P A VV +A +++V P G F+RD IPW Sbjct: 8 AVVTGANRGIGFETCRQLAKHGMKVVLAARDEAKGRAAAERLRDEDLD--VDFAPLDVSDDGSVRDFARYIKKSF--GRVDVLVNNAGIMIDGNEEVGSGASGVMQAKIETLRRTMEVNVYGALRVTQALLPLMPKEGA-RIINVSSGMGQLAEMN----------------------------------------------GGWPGYRISKTSLNALTRIFADELKET-GIRVNAICPGWVKTDMGGAKAPR----------------TPPQGADTVVWLATEREV-PTGGFFRDRKPIPW 240
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Match: A0A7C2UBP4_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UBP4_9PROT) HSP 1 Score: 111 bits (277), Expect = 4.150e-24 Identity = 98/296 (33.11%), Postives = 132/296 (44.59%), Query Frame = 2 Query: 326 AIITGANRGLGFALAERMSLLGHRVVLTCRGEDEGRAALNLLRERSLGDRLSFYPLDVANEKSVRDFRHVCVEGYLGGRVDVIFNNAGVCLEGCTSAVL-------LTTLAVNFYGALRVMDACLPSMCQMGKGSVVWVTSGDGELCNLGSYPRNLLEGAKSRQVSVSPAVDVEAAIEKIISRYCHANDCEEEIAFGPTPAYSLSKAAANAVVRTEGDALMTTSGVLLAAVCPGDVLTRMCSVPLGEERQGLQSQGESGAQVISPAVAAQAVVKVALQQDVYPGGHFYRDGIRIPW 1192 A++TGANRG+G +A +++ G +VVLT R +GRAAL L E +G + ++ LDV + S+R E + GRVDV+ NNAGV L+ S VL TL N G L++M A +P M Q G VV ++SG G+L +G TPAY +SK A NA+ RT L T GVL+ A+CPG V T M G + + + AA V +A D P G F+RD IPW Sbjct: 8 AVVTGANRGIGLEIARQLAKHGLKVVLTSRSAAKGRAALKSLGE--IGTHVQYHLLDVTSPVSIRALAAHVSERF--GRVDVLVNNAGVMLDPRGSRVLDARVKTFRDTLETNLLGPLQLMQALVPMMQQQRYGRVVNLSSGQGQLAEMGVG----------------------------------------------TPAYRVSKTALNALTRTAAAELNGT-GVLVNAMCPGWVRTDM--------------GGPNAPRTVEQ--AADTAVWLATLPDDGPTGGFFRDRQAIPW 236 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9350.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9350.2.2 >prot_C-tenellus_contig9350.2.2 ID=prot_C-tenellus_contig9350.2.2|Name=mRNA_C-tenellus_contig9350.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=355bp MYFGLSWVTQHLVFLLALHAYLTAVFSLVGLSTYAGRTPSKRALPLQAPAback to top mRNA from alignment at C-tenellus_contig9350:2165..4227+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9350.2.2 ID=mRNA_C-tenellus_contig9350.2.2|Name=mRNA_C-tenellus_contig9350.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2063bp|location=Sequence derived from alignment at C-tenellus_contig9350:2165..4227+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9350:2165..4227+ >mRNA_C-tenellus_contig9350.2.2 ID=mRNA_C-tenellus_contig9350.2.2|Name=mRNA_C-tenellus_contig9350.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1065bp|location=Sequence derived from alignment at C-tenellus_contig9350:2165..4227+ (Choristocarpus tenellus KU2346)back to top |