mRNA_C-tenellus_contig9350.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9350.1.1
Unique NamemRNA_C-tenellus_contig9350.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9350.1.1 vs. uniprot
Match: D8LLG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.200e-8
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 SIPMNIRNEWLILETYQQLQTEDKQAEEKKKAR-------------EVILRCKEDLDRQIAQNQERAKRER 174
            S+P NIRNEWLILETYQQ+  ++KQAEE ++A+             E + RCK+ LD QI Q   R+++ER
Sbjct:    2 SVPSNIRNEWLILETYQQILADEKQAEEDRRAQTVTFTCGRLSRSPEALQRCKQGLDEQIQQKLARSEKER 72
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLG7_ECTSI5.200e-847.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9350contigC-tenellus_contig9350:444..1460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.7946832-CDS-C-tenellus_contig9350:443..6131680790171.7946832-CDS-C-tenellus_contig9350:443..613Choristocarpus tenellus KU2346CDSC-tenellus_contig9350 444..613 -
1680790171.8074868-CDS-C-tenellus_contig9350:1357..14511680790171.8074868-CDS-C-tenellus_contig9350:1357..1451Choristocarpus tenellus KU2346CDSC-tenellus_contig9350 1358..1451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.8176737-UTR-C-tenellus_contig9350:1451..14601680790171.8176737-UTR-C-tenellus_contig9350:1451..1460Choristocarpus tenellus KU2346UTRC-tenellus_contig9350 1452..1460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9350.1.1prot_C-tenellus_contig9350.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9350 444..1451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9350.1.1

>prot_C-tenellus_contig9350.1.1 ID=prot_C-tenellus_contig9350.1.1|Name=mRNA_C-tenellus_contig9350.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=88bp
MNIRNEWLILETYQQLQTEDKQAEEKKKAREVILRCKEDLDRQIAQNQER
AKREREKDAAYDKEQALQHEKYKQEQEEARKVAHQKVL
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mRNA from alignment at C-tenellus_contig9350:444..1460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9350.1.1 ID=mRNA_C-tenellus_contig9350.1.1|Name=mRNA_C-tenellus_contig9350.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1017bp|location=Sequence derived from alignment at C-tenellus_contig9350:444..1460- (Choristocarpus tenellus KU2346)
TCGATCCCTATGAACATCCGAAATGAGTGGCTCATATTAGAGACATATCA
GCAACTTCAAACAGAGGATAAACAAGCTGAGGAAAAGAAGAAAGCAAGAG
AAGGTGGCGAAACTGATGATGACAGACCATGCAACATGAACCATTTGAAG
AACATGAATGAATTGATTGATTGTTCATTTGAACCCTGGAAGGGGAAGTA
TTGATATTATAATTGAAAAATACAAACACCCAGAAACGGACAGAGCAATG
AATGAAGGGCTGGAGGAGTCAATATATCGGCAAGTAAGATGGTAATTCAC
GATGAGGTTGTTTTAAGCAAAGAAAGAGTTGAGACTCCAAGTAATCCCTG
CACACAACACTTAGCCAAACACACATACGTACATAGAAGTTAAATGCTCA
TCGTCAATGGTAGGTAAGATGCGGGTGAGCTCACTTGTGCCTTTACCTTT
CTCTCTTTTTTGCATGTACCTACAACAAACTAAGTGCGAGCAAGCCAGAC
CGATTAAGATGTAGGCATGGATCCCTAGGAAGGTCAAAAATATACCATTT
TGTACAATTGAAAAAACAGTCATTGGTCAAGTTGGTGTTACTTTCTATGT
GGAAATGGGGAATATAGATTTTGCGTGCACTATTGTGCACAAATACGCAA
CCACTGCCCCAAGGTCAGGTTGACAGCTCAGATTGAGAATATCTCAAGAA
GGGGATACTGCTGTAACCAAGCATAATAATACTGATTTCTCTGTCTGTCT
AGGGTGATTGATGTCTCTCAGTACTTGGGTGAATTCACACTTTGGCTTAG
GCATCCATCAGCCCCGATGATGTGTGCGCATGTCCACGTGTGCGCAGTTA
TCCTTCGCTGTAAGGAAGACCTAGATCGCCAAATTGCACAGAACCAAGAA
CGGGCAAAGAGAGAGAGAGAGAAGGACGCAGCTTATGACAAGGAACAAGC
ACTGCAGCACGAGAAGTACAAGCAAGAGCAGGAAGAGGCCAGGAAAGTGG
CTCATCAGAAAGTTCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9350:444..1460-

>mRNA_C-tenellus_contig9350.1.1 ID=mRNA_C-tenellus_contig9350.1.1|Name=mRNA_C-tenellus_contig9350.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=264bp|location=Sequence derived from alignment at C-tenellus_contig9350:444..1460- (Choristocarpus tenellus KU2346)
ATGAACATCCGAAATGAGTGGCTCATATTAGAGACATATCAGCAACTTCA
AACAGAGGATAAACAAGCTGAGGAAAAGAAGAAAGCAAGAGAAGTTATCC
TTCGCTGTAAGGAAGACCTAGATCGCCAAATTGCACAGAACCAAGAACGG
GCAAAGAGAGAGAGAGAGAAGGACGCAGCTTATGACAAGGAACAAGCACT
GCAGCACGAGAAGTACAAGCAAGAGCAGGAAGAGGCCAGGAAAGTGGCTC
ATCAGAAAGTTCTG
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