mRNA_C-tenellus_contig102.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig102.5.1
Unique NamemRNA_C-tenellus_contig102.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: D8LEV0_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEV0_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 9.590e-58
Identity = 86/127 (67.72%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKGSEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKPQNTWKMLFDDIAKNISGGGKE 381
            +EKM+D RYAR RHIL+EEKG E +++LEE K  + GD++KFS+ A +MSTCTSA  GG+LKLLARGETVPEFD+I FN E G ++GPVET +GTHLIY+ESCNKPQNTWKMLFDDI   +SG  +E
Sbjct:   54 LEKMSDPRYARVRHILVEEKGEEGRSKLEEAKEEIAGDLDKFSEVAEKMSTCTSAPRGGRLKLLARGETVPEFDDIAFNGELGVVHGPVETQFGTHLIYVESCNKPQNTWKMLFDDIVDKVSGKEEE 180          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A6U8PGI0_EMIHU (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U8PGI0_EMIHU)

HSP 1 Score: 106 bits (264), Expect = 1.380e-26
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKGSEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKPQNT 327
            M++MTD R  RA HI+L      A   L E K  +  D  KF + AR  S C SA  GG L  + RG+  PEFDE++F EEPG +YGP++T +G HLIYL SC +P  T
Sbjct:   46 MKQMTDQRVGRASHIMLRPSDDAAAELLREWKAEIGDDEAKFQERARASSECRSAPRGGDLGFVTRGKLSPEFDEVIFEEEPGFVYGPLQTQFGYHLIYLHSCREPSGT 154          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S3SZ97_9SPIT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZ97_9SPIT)

HSP 1 Score: 103 bits (257), Expect = 9.320e-25
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKGSEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKPQNT 327
            M++MTD R  RA HI+L    S A+  L+  K+ +  D +KF   AR+ S C SA  GG L  + RG+  PEFDE++F EEPG +YGP+ T +G HLIYL SC +P ++
Sbjct:  125 MKQMTDQRVGRASHIMLRPSASAAET-LDGWKVEIADDEDKFQARARKSSQCRSAPRGGDLGFVTRGKLSPEFDEVIFEEEPGYVYGPIRTQFGYHLIYLHSCREPTSS 232          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S0HYJ7_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HYJ7_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 1.660e-23
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   10 MTDSRYARARHILLEEKGSEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNK 315
            +TD R  RA HIL++   +    R+ E K  +  D E F+  A E STC S A GG L   ARG+ V EFD ++FNEEPG +YGPV T +G HLI+L SC +
Sbjct:   56 LTDLRICRASHILVKGNDTNTLERIAEWKREIGNDEELFAKFAAEHSTCPSRARGGDLGYFARGKMVMEFDRVVFNEEPGAVYGPVRTDFGNHLIFLHSCRR 157          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S4B5F8_CHRCT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5F8_CHRCT)

HSP 1 Score: 96.3 bits (238), Expect = 1.650e-22
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKGSE-AKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKP 318
            +++ TD R  RA HI+L  +GSE A A+L E K  +  D E F++ AR+ S C S+A GG L  + RG+   +FD+++F+EEPG +YGPV + +G HLI+L SC +P
Sbjct:   50 LKQFTDQRVGRASHIML--RGSEVAVAQLIEWKREIADDEELFAERARQSSACRSSAKGGDLGFVTRGKLTKQFDDVIFSEEPGYVYGPVTSEFGHHLIFLHSCREP 154          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S4EUZ2_CHRCT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EUZ2_CHRCT)

HSP 1 Score: 96.3 bits (238), Expect = 6.420e-22
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKGSE-AKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKP 318
            +++ TD R  RA HI+L  +GSE A A+L E K  +  D E F++ AR+ S C S+A GG L  + RG+   +FD+++F+EEPG +YGPV + +G HLI+L SC +P
Sbjct:   50 LKQFTDQRVGRASHIML--RGSEVAVAQLIEWKREIADDEELFAERARQSSACRSSAKGGDLGFVTRGKLTKQFDDVIFSEEPGYVYGPVTSEFGHHLIFLHSCREP 154          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A0M0JHN3_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHN3_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-20
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   10 MTDSRYARARHILLEEKG-----SEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKP 318
            M D R A   HI L          EAKA ++  K  +  DI KF++ AR  S C +AA GG L  + R     +FD+ILF EEPGK+YGP+ TT G HL+YL+SC +P
Sbjct:   63 MQDQRVAGCSHINLAPGKCKLPLDEAKALMQRWKEEIGNDITKFAERARSDSHCATAATGGDLGFVVRKNLCQQFDDILFGEEPGKVYGPIVTTAGLHLVYLKSCREP 170          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S2MRN4_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MRN4_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 7.360e-20
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKG-----SEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKPQNTWKMLF 342
            +++M+D R A   HI L         +EAKA + + K  +  D++KF++ A+  S C++AANGG L  + R     +FD+ILF EE GK+YGP+ T  G HL+YL+SC +P +  + + 
Sbjct:   70 LKQMSDQRVASCSHINLAPGKCTLPLAEAKALMVQWKEEIGDDLDKFAERAKSDSHCSTAANGGDLGFMVRKNVCQQFDDILFEEEVGKVYGPIVTNAGLHLVYLKSCREPGSRGEAML 188          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S0ETD2_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETD2_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 5.600e-19
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 MEKMTDSRYARARHILLEEKG-----SEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLESCNKPQNTWKMLFDDIAKNISGGGKE 381
            +++M D R A   H+ L          EA A ++  K  +  D EKF++ A+  S C +AANGG L  + R     +FD ++F+EEPG++YGP+ T  G HLIYL SC +P++  + L   +    S GG+E
Sbjct:   59 LKQMQDQRVAGISHVNLAPGKCTLPLQEAIALMKTWKEEIGDDAEKFAERAKTDSDCPTAANGGNLGFIVRKNLCDQFDTVVFSEEPGRVYGPITTPAGLHLIYLHSCREPKSRGEAL---LGLPFSLGGEE 187          
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Match: A0A7S2HC75_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HC75_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.650e-19
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   28 ARARHILLEEKGSEAKARLEEVKLSVDGDIEKFSDAAREMSTCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYLE 303
            A A HIL++   +EA+ +++ +K  +  D+ KF++AA + S C S   GG L    R   VPEFD+++FNEE G ++GP+ T++G HLI++E
Sbjct:   18 AEASHILIKGTDAEAEQKIKAIKEEIGNDVTKFAEAATQHSDCPSGRQGGSLGEFGRYSMVPEFDKVVFNEEVGVVHGPIRTSFGFHLIFIE 109          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig102.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEV0_ECTSI9.590e-5867.72Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A6U8PGI0_EMIHU1.380e-2647.71Peptidyl-prolyl cis-trans isomerase n=2 Tax=Emilia... [more]
A0A7S3SZ97_9SPIT9.320e-2546.79Peptidyl-prolyl cis-trans isomerase n=1 Tax=Stromb... [more]
A0A7S0HYJ7_9EUKA1.660e-2348.04Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeoc... [more]
A0A7S4B5F8_CHRCT1.650e-2245.79Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chryso... [more]
A0A7S4EUZ2_CHRCT6.420e-2245.79Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chryso... [more]
A0A0M0JHN3_9EUKA1.800e-2045.37Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chryso... [more]
A0A7S2MRN4_9EUKA7.360e-2038.66Peptidyl-prolyl cis-trans isomerase n=1 Tax=Haptol... [more]
A0A7S0ETD2_9EUKA5.600e-1937.12Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeoc... [more]
A0A7S2HC75_9STRA9.650e-1941.30Peptidyl-prolyl cis-trans isomerase n=1 Tax=Helico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig102contigC-tenellus_contig102:7825..8783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEV0
PFAMsRotamase
Model size384
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.57e-58
EggNOG OGsCOG0760@1|root,2SBZU@2759|Eukaryota
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase, PpiC-type
Ec32 orthologEc-21_005670.1
DescriptionPPIC-type PPIASE domain
Cds size384
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.8659987-CDS-C-tenellus_contig102:7824..80431680789119.8659987-CDS-C-tenellus_contig102:7824..8043Choristocarpus tenellus KU2346CDSC-tenellus_contig102 7825..8043 -
1680789119.8771207-CDS-C-tenellus_contig102:8618..87831680789119.8771207-CDS-C-tenellus_contig102:8618..8783Choristocarpus tenellus KU2346CDSC-tenellus_contig102 8619..8783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig102.5.1prot_C-tenellus_contig102.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig102 7825..8783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig102.5.1

>prot_C-tenellus_contig102.5.1 ID=prot_C-tenellus_contig102.5.1|Name=mRNA_C-tenellus_contig102.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=128bp
MEKMTDSRYARARHILLEEKGSEAKARLEEVKLSVDGDIEKFSDAAREMS
TCTSAANGGKLKLLARGETVPEFDEILFNEEPGKIYGPVETTYGTHLIYL
ESCNKPQNTWKMLFDDIAKNISGGGKE*
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mRNA from alignment at C-tenellus_contig102:7825..8783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig102.5.1 ID=mRNA_C-tenellus_contig102.5.1|Name=mRNA_C-tenellus_contig102.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=959bp|location=Sequence derived from alignment at C-tenellus_contig102:7825..8783- (Choristocarpus tenellus KU2346)
ATGGAGAAGATGACGGATAGTCGTTACGCAAGGGCGCGACATATCCTTCT GGAGGAGAAGGGTTCTGAAGCTAAAGCTCGTCTGGAGGAAGTAAAGCTAT CAGTCGATGGGGACATTGAGAAGTTCTCTGATGCTGCTCGGGAAATGAGT ACCTGCACCAGTGCGGTGAGGTCTCGTGGATTATTGTCCTTACCACTGTT TTTCACACAGCGTTTGTGTTGGTTTTTCTTGTGTGTACCACTCAGCACAA AAGACACTTTTCCCTGCAAATAGACCTGGTGCATGAGTTGCTGATACATC AATACACAACTGCCCTGATTGTATCGTACCTGAAACTCCCCCCAACCACC CCTTCCATCATGGTTCTGGGCAGCACTTGAGAGGGAGGGTTATGTACCTT GAACTATGCAATCATGTAGCCTGGGCAAATTTCTCTCATCGTAATTTCAC TACAATTTACAAATACTCAACAAATCAATTGGAAAGAAGAATCAGCAAGG TGGCGTTGAAATATGGATTCTCTCTGATGATTAAACTCTATTTGCCACAA CTACAAGAACATATTTCTATACACTTCTCAAAAGTTGAGCAACACAAGTG TTTAGGTGACTACTATAATATGTGCTTGAACCAAAACAAAAGAATTGCAT TTTTTTTTCTCATTTTTTGTTTGTATTATCACCTCATACATGCACATACA ATATAAAGTGTATGATCTATAGTTACTCCTCTCCTTCCAGGCCAATGGCG GAAAACTTAAGCTGCTTGCACGTGGTGAAACTGTACCAGAGTTTGACGAG ATTCTATTTAATGAGGAGCCAGGCAAGATATATGGCCCTGTGGAGACAAC ATATGGCACCCACCTCATTTACCTTGAAAGCTGCAATAAACCACAGAACA CATGGAAGATGTTGTTTGATGATATTGCCAAGAACATTAGTGGGGGTGGG AAAGAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig102:7825..8783-

>mRNA_C-tenellus_contig102.5.1 ID=mRNA_C-tenellus_contig102.5.1|Name=mRNA_C-tenellus_contig102.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=384bp|location=Sequence derived from alignment at C-tenellus_contig102:7825..8783- (Choristocarpus tenellus KU2346)
ATGGAGAAGATGACGGATAGTCGTTACGCAAGGGCGCGACATATCCTTCT
GGAGGAGAAGGGTTCTGAAGCTAAAGCTCGTCTGGAGGAAGTAAAGCTAT
CAGTCGATGGGGACATTGAGAAGTTCTCTGATGCTGCTCGGGAAATGAGT
ACCTGCACCAGTGCGGCCAATGGCGGAAAACTTAAGCTGCTTGCACGTGG
TGAAACTGTACCAGAGTTTGACGAGATTCTATTTAATGAGGAGCCAGGCA
AGATATATGGCCCTGTGGAGACAACATATGGCACCCACCTCATTTACCTT
GAAAGCTGCAATAAACCACAGAACACATGGAAGATGTTGTTTGATGATAT
TGCCAAGAACATTAGTGGGGGTGGGAAAGAGTGA
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