mRNA_C-tenellus_contig8256.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig8256.1.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 120 bits (302), Expect = 4.860e-24 Identity = 99/298 (33.22%), Postives = 139/298 (46.64%), Query Frame = 2 Query: 2048 GGGGKEDDQCDRALWDNLSKQLQHHLCRTLTIPSTAAVVEVEGSYGLQGCGGELGNLVNHQEYGYGQI-LGQPRGMNEDDLIFVQNMLERN---------------------GNGLESLG-----------------------------AYVEFSKWWGPLVSTLLLLQHEWSSH---AIFGFVGRYKAERLLLDQDSGTFLLRFSETKPGVLVLSFTD-------KAQKTPTVQART---CVSNFVQHSLIHVEPKV-CYMVVE-GTTETYRNLGQLLDDCIKLWKVYPSMESKKDF 2743 G GG + C WD L + L HLC LTIPS+ V EG YG +G +G V + GYG + Q R MNE++L FV+ +L+ G L S+G A+VEFS WW PL+ TL LL+++W+S + GF+ R AER LL+++ GTFLLRFSE++PG LV+SFT+ +A T R+ S V+H L+ V CY+ VE G+ Y +L L+ C + +YP + + F Sbjct: 648 GAGGVTNYDC--VPWDYLRRGLMQHLCGKLTIPSSHDEVVDEGPYGWRGDASSVGVGVGN---GYGAVNTPQVRWMNEEELAFVRGVLKAKQEKVRLKQEKLRQQRASRGYAGTELVSIGSSGAADAASGRXXXXXXXXXXXXDVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAF 940
BLAST of mRNA_C-tenellus_contig8256.1.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.790e-23 Identity = 90/270 (33.33%), Postives = 128/270 (47.41%), Query Frame = 2 Query: 2120 HLCRTLTIPSTAAVVEVEGSYGLQGCGGELGNLVNHQEYGYGQI-LGQPRGMNEDDLIFVQNMLER--------------------------------------------NGNG-LESLGAYVEFSKWWGPLVSTLLLLQHEWSSH---AIFGFVGRYKAERLLLDQDSGTFLLRFSETKPGVLVLSFTDKAQKT-----------PTVQARTCVSNFVQHSLIHVEPKV-CYMVVE-GTTETYRNLGQLLDDCIKLWKVYPSMESKKDF 2743 HLC LTIPS V EG YG +G + GYG + Q R MNE++L FV+ +L+ NGNG + SL A+VEFS WW PL++TL LL+++W+S + GF+ R AER LL+++ GTFLLRFSE++PG LV+SFT+ + P + R+ S V+H L+ V CY+ VE G+ Y +L L+ C + +YP + + F Sbjct: 3 HLCGNLTIPSNDTKVVDEGPYGWRGDASVGFGGRGGEGNGYGAVNTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQ-SMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMEVLYPDVRKEDAF 271
BLAST of mRNA_C-tenellus_contig8256.1.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.480e-16 Identity = 85/303 (28.05%), Postives = 138/303 (45.54%), Query Frame = 2 Query: 1889 DTRSWVGSGAAEFRVVEPPLSMSSAGKRVWEVACREGIQDKGCLLAWVGAVIHGGGG-KEDDQCDRAL-----------WDNLSKQLQHHLCRTLTIPSTAAVVEVEGSYGLQGCGGELGNLVNHQEYGYGQILGQPRGMNEDDLIFVQNMLERNGNGLESLGAYVEFSKWWGPLVSTLLLLQHEWSSHA---IFGFVGRYKAERLLLDQDSGTFLLRFSETKPGVLVLSFTDKAQKTPTVQ-ARTCVSNFVQHSLIHVE--PKVCYMVVEGTTETYRNLGQLLDDCIKLWKVYPSMESKKDF 2743 D R + A + P + M +R ++A G+ D+GC L WV A GG ++DD W+ L + L HL R T + + +G +L + G + G D+ V + +E A+ +FS+WW PL+STL +++++W+ + GF+ R A+RLL+ ++ GTFLLRFSE+K G LV+SFT P+V R +S V+HSL+ V+ + C +G Y +L + +L K+YP + ++ F Sbjct: 604 DHRRVLAQEAPDDEPESPQMDMEE--QRTRDLARAAGVVDRGCRLVWVTATSRMAGGCRQDDXXXXXXXWSSRRGKLVSWECLQESLMEHL-REGTKTTRNWDDPIISPHGRVADTPQLEFIRGILRRGQEAVARARWGATGDECPEVDGGCRYDFISVE---AFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQ-----PSVSPGRRSLS--VKHSLVEVKWGGRCCIQAEKGGMRCYASLHDFVRRIPELKKLYPDIPKEEAF 893
BLAST of mRNA_C-tenellus_contig8256.1.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 9.950e-16 Identity = 87/344 (25.29%), Postives = 143/344 (41.57%), Query Frame = 2 Query: 1916 AAEFRVVEPPLS-MSSAGKRVWEVACREGIQDKGCLLAWVGAVIH------------GGGGKEDDQCDRALWDNLSKQLQHHLCR----------TLTIPSTAAV--VEVEGSYGLQGCGGELGNLVNHQEYGY-GQILGQPRGMNEDDLIFVQNMLERNGNGLESLGAYVEFSKWWGPLVSTLLLLQHEWSSHA---IFGFVGRYKAERLLLDQDSGTFLLRFSETKPGVLVLSFTDKA---------------------------QKTPTVQARTCVSNF----------VQHSLIHVE--PKVCYMVVEGTTETYRNLGQLLDDCIKLWKVYPSMESKKDF 2743 A E +EP S M +R W++A G+ D+GC L WV A GGG + + W+ L + L HL + +P V ++E G+ G E V +G G + G DD + V+ A+ FS+WW PL++TL +++++W++ + GF+ R ++RLL+ ++ GTFLLRFSE++ G LV+SFT + Q +P + R + F V+HSL+ V+ + C +G Y +L + +L K+YP + ++ F Sbjct: 113 AQEAPCIEPESSQMDLKEQRAWDLARAAGVVDRGCRLIWVTATSRMARGCRQDDGGGSGGGWSSRRGEIVSWECLQESLMEHLREGTKTTRNWDDPIILPHGRVVDTPQLEFIRGILRRGQEA---VAKARWGATGDECTEVGGDGRDDFVSVE--------------AFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVISFTQPSVSVSRLSRISRCLVPFISCAGRLACCLQGSP-INPRIVLQQFQLRSGRRSLSVKHSLVEVKWGGRCCIQAEKGGMRCYGSLHDFVRQIPELKKLYPDIPKEEAF 438
BLAST of mRNA_C-tenellus_contig8256.1.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.240e-8 Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 2 Query: 2333 SLGAYVEFSKWWGPLVSTLLLLQHEWS-SHAIF--GFVGRYKAERLLLDQDSGTFLLRFSETKPGVLVLSFTDKAQKTPTVQARTCVSNFVQHSLIHV-EPKVCYMVV--EGTTETYRNLGQLLDDCIKLWKVYPSMESKKDFIGR 2752 S+ + +FS+WW PL+ TL +++++W+ + +F GF+GR + + L + G FLLRFSE+ PG LV+S HSL+ V E CYM V +GT Y +L L+ +L +Y + ++ F GR Sbjct: 927 SVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLR-RARGAFLLRFSESHPGKLVIS------------------RAYHHSLVEVTEGGRCYMTVNQQGTRREYESLHDLVTQNGQLRHLYQDIPMEQVFTGR 1053 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8256.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8256.1.1 >prot_C-tenellus_contig8256.1.1 ID=prot_C-tenellus_contig8256.1.1|Name=mRNA_C-tenellus_contig8256.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=410bp MHSAQFLLDHMPRDFTYSELGLENKAPHNEVLNALANHKVLLNARGHPGTback to top mRNA from alignment at C-tenellus_contig8256:1938..5869- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8256.1.1 ID=mRNA_C-tenellus_contig8256.1.1|Name=mRNA_C-tenellus_contig8256.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3932bp|location=Sequence derived from alignment at C-tenellus_contig8256:1938..5869- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8256:1938..5869- >mRNA_C-tenellus_contig8256.1.1 ID=mRNA_C-tenellus_contig8256.1.1|Name=mRNA_C-tenellus_contig8256.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1230bp|location=Sequence derived from alignment at C-tenellus_contig8256:1938..5869- (Choristocarpus tenellus KU2346)back to top |