mRNA_C-tenellus_contig816.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig816.4.1
Unique NamemRNA_C-tenellus_contig816.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig816.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig816contigC-tenellus_contig816:4993..9231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2683
Hectar predicted targeting categoryother localisation
Exons6
Cds size1428
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig816.4.1prot_C-tenellus_contig816.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig816 6499..8430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790083.7502124-UTR-C-tenellus_contig816:4992..52461680790083.7502124-UTR-C-tenellus_contig816:4992..5246Choristocarpus tenellus KU2346UTRC-tenellus_contig816 4993..5246 +
1680790083.7627354-UTR-C-tenellus_contig816:5846..59361680790083.7627354-UTR-C-tenellus_contig816:5846..5936Choristocarpus tenellus KU2346UTRC-tenellus_contig816 5847..5936 +
1680790083.7805903-UTR-C-tenellus_contig816:6186..62701680790083.7805903-UTR-C-tenellus_contig816:6186..6270Choristocarpus tenellus KU2346UTRC-tenellus_contig816 6187..6270 +
1680790083.795243-UTR-C-tenellus_contig816:6472..64981680790083.795243-UTR-C-tenellus_contig816:6472..6498Choristocarpus tenellus KU2346UTRC-tenellus_contig816 6473..6498 +
1680790083.8356895-UTR-C-tenellus_contig816:8430..92311680790083.8356895-UTR-C-tenellus_contig816:8430..9231Choristocarpus tenellus KU2346UTRC-tenellus_contig816 8431..9231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790083.804589-CDS-C-tenellus_contig816:6498..66611680790083.804589-CDS-C-tenellus_contig816:6498..6661Choristocarpus tenellus KU2346CDSC-tenellus_contig816 6499..6661 +
1680790083.8139076-CDS-C-tenellus_contig816:6808..69391680790083.8139076-CDS-C-tenellus_contig816:6808..6939Choristocarpus tenellus KU2346CDSC-tenellus_contig816 6809..6939 +
1680790083.823894-CDS-C-tenellus_contig816:7296..84301680790083.823894-CDS-C-tenellus_contig816:7296..8430Choristocarpus tenellus KU2346CDSC-tenellus_contig816 7297..8430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig816.4.1

>prot_C-tenellus_contig816.4.1 ID=prot_C-tenellus_contig816.4.1|Name=mRNA_C-tenellus_contig816.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=476bp
MEAGEVKRVTTNSGGNIPNALALEWVPENKAKKGRSPGVWESLVTASMNL
SFPPLHTAVMRRGGGVQRLQPPPPPPKAPIPVELCLLSREELVARVQEAE
KSSAYWKDRCADTEKKLAAARVALEFAAPRTRVANSEGALSPKSSPVKER
SSTVDEEKNIRDVEKDIPHKSRAPGYVKLTRPVLSHHTDPIAEFCTDYEV
TVPSSASNSPGGDVDSVSGSEDKQSSSPAVSPPELRHPRRAELVAAVEGS
QVGAEARAVEEEVFHDLRHHVHQGKTKEQQLPSGAGFGGVRGNVADKARP
KSLSMPAARTRLAVRGDNVGMSSLSPCSEMEDTVSVSTAAEKVAAVASVG
SGVTGVEGCSSEGGRGTRANSGCLGGTSTGNSEHLTLSKVGRRRLNERKQ
VVSQGGISKQAARLTTLNKMVGQSQTVDGVQATGQVSRLSWQGTRIGRKS
REGVRAEDGGANVKPEGFSLTLPAH*
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mRNA from alignment at C-tenellus_contig816:4993..9231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig816.4.1 ID=mRNA_C-tenellus_contig816.4.1|Name=mRNA_C-tenellus_contig816.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4239bp|location=Sequence derived from alignment at C-tenellus_contig816:4993..9231+ (Choristocarpus tenellus KU2346)
CCCCAGGCGCAGCGCAGCCTCCCCTGAGTCCGCATCACCACCCTTCAAGC
AAAAGGCTGCTTGAGCTCATTGAAACGGCTGCAGCCCATCAGATGCCTTC
TCACAGCATATCCAGCTCAAACGGTTCTATGAAGGCGCAGGGGCTTCGGG
GGCGAGGGGGAAGCCACCTGCAAATAGATGGATTGGCAGCATCACTACTG
GTCACACTGCGGGCAGGAACTGAAGGTTATGTTGAAAAGAGCACCGTTCT
CAAGGTGACCTTGGGGTGAGGAGAGTGGGGGGGGGATGCTGAGCAGATGT
TTGGGATGATTAGGCAATATTTAGGGTAGGAGAATAAGGGGGATGAAGTG
CAAACTTTTGAGGTGATGAGGATATCTTGACTCTGTGTAAGAATGACCAC
ATACAAAAAATGAGAACTTGTACATGACACTCACTAAGATGTGCTGTATT
AGACAATGCTCCATTTTTTTTCTTGAGTCTTGTGTACTGTAGTGCACTCA
ACCTGCCTGTGTTGTCGCCTTGTTCCATCAAACCTCTGCTTTGCATCATT
AGGGACAACAAGCTTTAGATGTTTTCTAATGTTGCTTTATGATGTTCAAT
TACAGTGGTCAATGGGATTTACCTCATGTACATTGCAAAATGTGTCTTGT
TCTGCAGTGTTTAGAGGTTACCTGTTGAAACAGCCATCATTTGTCCAGGG
AACTATGATGAGACACCCAGCCTGATTCATGTACTCTGATTGCCCTACTC
GTGCCCTGAATGTCAAAATGCAAGATATTGCCCCTACTTCTTGCACCCTT
ATTGCAGCACCACCCCGTGCACACCTGTGAAACGTACATGAAAATCTTCA
ACAGGCCCTGGCAAGCGCTAGTCGTTCAACACGCAATAATGGGGCTAAGG
AGCGCTCATTACTAGCCAATGGCAGAAGTATGTCCTTCAATCGAGTGAGT
CAGGCAGGAGGTCACCATAGCACCATGTACCCATTCATTTTTGTAACAGA
TGAAGTGTAGAGAGCAGCCTGTGCCTCTTGCCCACCTTTTTGGTGAGTCG
ATGTGCTGTCTTCAACCTATCTTTATCTTTATCTTATCTTTTCTTTCCCT
CATTCTTGCTCTAACCAATCTCCATCTTCACTTCTTTTCCAGCCCTTACC
TTGGATCCCAAATTGACTAAACCTTTCATCCAAACCGTGCACAGATGCTT
AGCATCAGGAGATCTGGGAAGAAACAGAAGGAGGAGAGTACACCTTCCAA
GCTGGCAGTTACACCAGCACATCCATCAGCTCCCCCCATGTCCCCTCCTG
TCTCCTCTAATTCCTCCTCACCTGGAAGCAAGGAGTCCCTCCACGCAACT
TGGCCAACCAACTCTAGCCTCAAAGCATCCATAGAGGAAGATTCCTTGTT
GAGGCATTCTTGTGGTGAGATTGAAAGGGGAGTTGTGGAAGGGGAAATCT
CCTCTTCCCCATCAAAGGAGAGCTTGACAGCTGTAGCTGGGGGGCAATCC
AAAACAATGGAGGCTGGAGAAGTGAAACGGGTGACTACAAACAGTGGGGG
CAACATTCCAAATGCCTTGGCTTTGGAATGGGTCCCAGAGAACAAAGCTA
AAAAGGGGCGCAGTCCTGGTGTGTGGGAATCACTGGTGACAGCGAGCATG
AACTTATCGTTTCCACCTCAGACTGAAGAGCAGAGATTGCCTATCACATC
TCCTCATGCCGAGGAGGAGGAACAGCAATGGGAGCAGGGAAAGGAGATGA
GGGATGTGCCTGGGTTGGGTCGTGGAAACCAAGGGCAGAAGAAACGCCTA
GGGGGTCCATCTACCGTTCACACTGCTGTAATGCGACGGGGGGGTGGAGT
GCAACGTTTGCAACCTCCTCCTCCCCCACCCAAGGCGCCAATACCTGTGG
AGCTGTGCCTCCTGTCCCGGGAGGAGTTGGTGGCGAGGGTACAGGAGGTG
ACACAGTAGAGGGAATTTCACTGTGTATCAATCTCTAATTCAATTACAGG
GGTGTGTTTCTGTAGATAGCTTTCTGGTCAGATGCTCTATGAAATGTGGT
TCGAGAATGCTATTGTGCACGTCATAGACCTCTCTTCTATCCTTTATCGT
GTGCCCAAACCTGCAATAGGGCAATCTGGTGAGTGACTGGTGACAAAACA
ACCCACCGAGACCCATTCTGCAATAGTGTCAACCTTCTTCCAGATCCCAA
ACATCGTGACACCCAGGCTTTGTCAAATCTACTCTCTCCCCAAACCAATT
TCCCAGGTTTGCCTCAATTGCACCTCTTGTTTTTGACCGTCCTCACCTTG
GCAGGCTGAGAAATCATCTGCCTATTGGAAGGATCGATGTGCTGATACGG
AAAAGAAACTCGCTGCTGCCCGAGTGGCCCTTGAGTTTGCTGCCCCGAGG
ACTAGAGTTGCAAACAGCGAAGGAGCTTTGTCCCCAAAATCCAGTCCAGT
TAAAGAGCGAAGCTCAACAGTTGATGAAGAGAAGAACATCAGGGATGTGG
AGAAGGACATCCCTCACAAGTCTAGAGCGCCTGGGTATGTCAAACTCACC
CGTCCTGTTCTGTCTCATCACACAGACCCTATAGCTGAGTTCTGTACGGA
CTACGAAGTGACCGTTCCATCTTCTGCAAGCAATTCTCCTGGTGGCGATG
TGGATTCGGTAAGTGGGTCTGAGGACAAACAGTCATCATCACCAGCAGTC
TCGCCTCCTGAGTTGCGACACCCACGGCGAGCAGAACTCGTTGCAGCTGT
GGAAGGGTCACAGGTGGGTGCAGAAGCAAGGGCTGTGGAGGAGGAAGTTT
TCCATGACCTGAGACACCACGTGCATCAAGGGAAGACCAAAGAACAACAA
CTTCCATCTGGAGCAGGCTTTGGGGGAGTAAGGGGCAATGTGGCAGATAA
GGCACGACCTAAGTCCCTGTCTATGCCAGCTGCCAGAACACGGTTGGCTG
TAAGGGGGGACAATGTAGGCATGTCATCACTGTCGCCTTGTTCGGAAATG
GAGGACACGGTGTCAGTGTCTACTGCAGCGGAGAAGGTTGCAGCAGTGGC
CTCGGTTGGTTCAGGGGTAACAGGTGTTGAAGGTTGTAGCAGCGAAGGGG
GAAGGGGAACGAGAGCGAACAGTGGGTGCCTTGGAGGTACCAGTACTGGT
AATAGTGAACATCTTACTTTGAGTAAGGTGGGGCGTAGGAGATTGAATGA
GAGGAAGCAGGTGGTTTCGCAGGGGGGAATCTCGAAGCAGGCAGCCAGGT
TGACCACTTTGAACAAGATGGTAGGTCAAAGCCAAACCGTTGATGGTGTG
CAAGCAACAGGGCAGGTTAGTCGCCTGAGTTGGCAAGGAACGAGGATAGG
GAGGAAATCCAGGGAAGGGGTGAGAGCAGAGGATGGGGGTGCCAATGTCA
AACCTGAGGGCTTCTCCCTCACATTGCCAGCTCATTGAGATTTGCCACCG
TGGCCCGGAAGATGTCAACCTCCAGTCATTCAAACCTCAGGTGGAGAGTT
TAAGGTTTATGGATCTTAGTATAAAATGTTTTAATGTTAATATAGACGAA
TATTTCCCAAAGTTTTTCCCATTCTTCTGGTGTATTACTTGTGCGTATCC
GTGTTCTCTATTGTCTGACAAGGATAGTACAGGAACTACTGGTGACCAAC
AGTGCCCATAGCTTCGATGGCTTCTGACCAGTTGTTGCTGCACATGATGT
GTGTCTGTGTATTTTGTGGACTATGTCGGAAACCTAGTAATGACTTAGTA
GGTAGCACTATTTTTTGCCCTCTTCTCTATGAAGTTAGTTCGTGATTGTA
TGATTAATAAATGGGGGCAGCAATGGATAATATGTTTGTGTATCAATCAC
GCACAAACCAGGTGAACTTGAACTTCCAGAGATAAGTTTGAGTTTTGGAA
TGATGATTTAGTTTTGCTTCACAAGCAATACTTGTCTGATGATCAGTACA
TGAGATACGATTTCACTGTACGTTGGTGGTGTTGCAGTGGAGTGGGTCAT
GAAAGTGGATGGGATGTCATTTTTTCGGATGGACTGCATTTTTTTGTCAC
TAATTTACTGAGTGAGGATACTGAGGTGGACCATTCTAATGGAGGCTGGG
ACGACTGGAATGAGTACAAGGATGGACCTCCTTGCTCGATTTCCCCCCTA
GTTCTTCTTTCTCTTGCTGATACACCATCTATACGGTGGATGTATCGCTG
TTTTTGATGTCTTTGTACTGTCTTTGTACTTGTAAGCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig816:4993..9231+

>mRNA_C-tenellus_contig816.4.1 ID=mRNA_C-tenellus_contig816.4.1|Name=mRNA_C-tenellus_contig816.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1428bp|location=Sequence derived from alignment at C-tenellus_contig816:4993..9231+ (Choristocarpus tenellus KU2346)
ATGGAGGCTGGAGAAGTGAAACGGGTGACTACAAACAGTGGGGGCAACAT
TCCAAATGCCTTGGCTTTGGAATGGGTCCCAGAGAACAAAGCTAAAAAGG
GGCGCAGTCCTGGTGTGTGGGAATCACTGGTGACAGCGAGCATGAACTTA
TCGTTTCCACCTCTTCACACTGCTGTAATGCGACGGGGGGGTGGAGTGCA
ACGTTTGCAACCTCCTCCTCCCCCACCCAAGGCGCCAATACCTGTGGAGC
TGTGCCTCCTGTCCCGGGAGGAGTTGGTGGCGAGGGTACAGGAGGCTGAG
AAATCATCTGCCTATTGGAAGGATCGATGTGCTGATACGGAAAAGAAACT
CGCTGCTGCCCGAGTGGCCCTTGAGTTTGCTGCCCCGAGGACTAGAGTTG
CAAACAGCGAAGGAGCTTTGTCCCCAAAATCCAGTCCAGTTAAAGAGCGA
AGCTCAACAGTTGATGAAGAGAAGAACATCAGGGATGTGGAGAAGGACAT
CCCTCACAAGTCTAGAGCGCCTGGGTATGTCAAACTCACCCGTCCTGTTC
TGTCTCATCACACAGACCCTATAGCTGAGTTCTGTACGGACTACGAAGTG
ACCGTTCCATCTTCTGCAAGCAATTCTCCTGGTGGCGATGTGGATTCGGT
AAGTGGGTCTGAGGACAAACAGTCATCATCACCAGCAGTCTCGCCTCCTG
AGTTGCGACACCCACGGCGAGCAGAACTCGTTGCAGCTGTGGAAGGGTCA
CAGGTGGGTGCAGAAGCAAGGGCTGTGGAGGAGGAAGTTTTCCATGACCT
GAGACACCACGTGCATCAAGGGAAGACCAAAGAACAACAACTTCCATCTG
GAGCAGGCTTTGGGGGAGTAAGGGGCAATGTGGCAGATAAGGCACGACCT
AAGTCCCTGTCTATGCCAGCTGCCAGAACACGGTTGGCTGTAAGGGGGGA
CAATGTAGGCATGTCATCACTGTCGCCTTGTTCGGAAATGGAGGACACGG
TGTCAGTGTCTACTGCAGCGGAGAAGGTTGCAGCAGTGGCCTCGGTTGGT
TCAGGGGTAACAGGTGTTGAAGGTTGTAGCAGCGAAGGGGGAAGGGGAAC
GAGAGCGAACAGTGGGTGCCTTGGAGGTACCAGTACTGGTAATAGTGAAC
ATCTTACTTTGAGTAAGGTGGGGCGTAGGAGATTGAATGAGAGGAAGCAG
GTGGTTTCGCAGGGGGGAATCTCGAAGCAGGCAGCCAGGTTGACCACTTT
GAACAAGATGGTAGGTCAAAGCCAAACCGTTGATGGTGTGCAAGCAACAG
GGCAGGTTAGTCGCCTGAGTTGGCAAGGAACGAGGATAGGGAGGAAATCC
AGGGAAGGGGTGAGAGCAGAGGATGGGGGTGCCAATGTCAAACCTGAGGG
CTTCTCCCTCACATTGCCAGCTCATTGA
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