mRNA_C-tenellus_contig814.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig814.2.1
Unique NamemRNA_C-tenellus_contig814.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A7J6MVI7_PEROL (Uncharacterized protein n=6 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MVI7_PEROL)

HSP 1 Score: 66.2 bits (160), Expect = 4.050e-11
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADEE 186
            VFQ +T+EGWTDVMY+  D++S W +S+ +V+LI++GSF +LN+ LAV+ ++    DEE
Sbjct:  382 VFQSITLEGWTDVMYLLQDSHSDWFASAYFVMLIIVGSFFLLNVALAVVWDAFMSTDEE 440          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A7J6MK14_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MK14_PEROL)

HSP 1 Score: 66.2 bits (160), Expect = 4.060e-11
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADEE 186
            VFQ +T+EGWTDVMY+  D++S W +S+ +V+LI++GSF +LN+ LAV+ ++    DEE
Sbjct:  382 VFQSITLEGWTDVMYLLQDSHSDWFASAYFVMLIIVGSFFLLNVALAVVWDAFMSTDEE 440          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A7S1ETP7_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETP7_9RHOD)

HSP 1 Score: 65.9 bits (159), Expect = 5.470e-11
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADEEAVR 195
            VFQ VT+EGWTDVMY  MD  S WA+   ++LLILLGSF++LNL +AVITES +   E+  +
Sbjct:  175 VFQCVTLEGWTDVMYQVMDTTSTWAAVY-FILLILLGSFLLLNLAIAVITESYTQVQEDEAQ 235          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A812PGF5_9DINO (CACNA1I protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PGF5_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 7.500e-11
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    4 SKVFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADE 183
            S +FQ +TMEGWTD+MYM MD+Y+  A+   +V+LIL GSF +LNL+LAVI+E  +++ +
Sbjct:  359 SAIFQSITMEGWTDIMYMVMDSYNGVAAGVYFVVLILFGSFFLLNLLLAVISEQFNESQK 418          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A5A8C3H7_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3H7_CAFRO)

HSP 1 Score: 65.5 bits (158), Expect = 7.560e-11
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    4 SKVFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADE 183
            S +FQ +TMEGWTD+MYM MD+Y+  A+   +V+LIL GSF +LNL+LAVI+E  +++ +
Sbjct:  422 SAIFQSITMEGWTDIMYMVMDSYNGVAAGVYFVVLILFGSFFLLNLLLAVISEQFNESQK 481          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A5A8D9W3_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9W3_CAFRO)

HSP 1 Score: 65.5 bits (158), Expect = 7.580e-11
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    4 SKVFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADE 183
            S +FQ +TMEGWTD+MYM MD+Y+  A+   +V+LIL GSF +LNL+LAVI+E  +++ +
Sbjct: 1146 SAIFQSITMEGWTDIMYMVMDSYNGVAAGVYFVVLILFGSFFLLNLLLAVISEQFNESQK 1205          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: C5L4Y8_PERM5 (Voltage-gated cation channel, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L4Y8_PERM5)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-10
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADEE 186
            VFQ +T+EGWTDVMY+  D++S W +S+ ++ LI++GSF +LN+ LAV+ ++    DEE
Sbjct:  347 VFQSITLEGWTDVMYLLQDSHSDWFASAYFIALIIVGSFFLLNVALAVVWDAFMSTDEE 405          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A7J6MNG9_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MNG9_PERCH)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-10
Identity = 29/59 (49.15%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADEE 186
            VFQ +T+EGWTDVMY+  D++S W +S  +++LI++GSF +LN+ LAV+ ++ S  +EE
Sbjct:  382 VFQSITLEGWTDVMYLLQDSHSDWFASVYFIILIIVGSFFLLNVALAVVWDAFSSIEEE 440          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A7S2F8U8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F8U8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.620e-10
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITESISDADEE 186
            +FQ V+MEGWTDVMYM MD+Y    S  ++VLL++LGSF +LNLVL V+++S+   + E
Sbjct: 1462 IFQSVSMEGWTDVMYMTMDSYGVVTSFILFVLLVVLGSFFVLNLVLGVLSDSVGGDEAE 1520          
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Match: A0A7J6Q648_PEROL (Ion_trans domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6Q648_PEROL)

HSP 1 Score: 60.5 bits (145), Expect = 4.000e-10
Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   10 VFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLAVITES 165
            VFQ +T+EGWTDVMY+  D++S W +S+ +V+LI++GSF +LN+ LAV+ ++
Sbjct:   72 VFQSITLEGWTDVMYLLQDSHSDWFASAYFVVLIIVGSFFLLNVALAVVWDA 123          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig814.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6MVI7_PEROL4.050e-1150.85Uncharacterized protein n=6 Tax=Perkinsus olseni T... [more]
A0A7J6MK14_PEROL4.060e-1150.85Uncharacterized protein n=2 Tax=Perkinsus olseni T... [more]
A0A7S1ETP7_9RHOD5.470e-1158.06Hypothetical protein (Fragment) n=2 Tax=Timspurcki... [more]
A0A812PGF5_9DINO7.500e-1153.33CACNA1I protein (Fragment) n=1 Tax=Symbiodinium sp... [more]
A0A5A8C3H7_CAFRO7.560e-1153.33Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8D9W3_CAFRO7.580e-1153.33Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
C5L4Y8_PERM51.410e-1049.15Voltage-gated cation channel, putative n=1 Tax=Per... [more]
A0A7J6MNG9_PERCH1.420e-1049.15Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]
A0A7S2F8U8_9STRA3.620e-1054.24Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7J6Q648_PEROL4.000e-1051.92Ion_trans domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig814contigC-tenellus_contig814:9815..10012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009036368.1
PFAMsIon_trans
Model size198
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.71e-10
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota
Descriptionmembrane depolarization during action potential
Cds size198
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790082.6832752-CDS-C-tenellus_contig814:9814..100121680790082.6832752-CDS-C-tenellus_contig814:9814..10012Choristocarpus tenellus KU2346CDSC-tenellus_contig814 9815..10012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig814.2.1prot_C-tenellus_contig814.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig814 9815..10012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig814.2.1

>prot_C-tenellus_contig814.2.1 ID=prot_C-tenellus_contig814.2.1|Name=mRNA_C-tenellus_contig814.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=66bp
MSKVFQKVTMEGWTDVMYMCMDAYSPWASSSIWVLLILLGSFVMLNLVLA
VITESISDADEEAVR*
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mRNA from alignment at C-tenellus_contig814:9815..10012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig814.2.1 ID=mRNA_C-tenellus_contig814.2.1|Name=mRNA_C-tenellus_contig814.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=198bp|location=Sequence derived from alignment at C-tenellus_contig814:9815..10012+ (Choristocarpus tenellus KU2346)
ATGTCAAAGGTCTTTCAAAAGGTGACCATGGAAGGATGGACGGATGTAAT GTACATGTGCATGGATGCCTACAGTCCATGGGCCTCATCCTCTATATGGG TTCTCCTCATTCTCCTGGGATCATTTGTGATGCTGAACCTGGTCCTTGCA GTCATCACCGAGTCTATCAGTGATGCTGATGAGGAGGCGGTAAGATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig814:9815..10012+

>mRNA_C-tenellus_contig814.2.1 ID=mRNA_C-tenellus_contig814.2.1|Name=mRNA_C-tenellus_contig814.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=198bp|location=Sequence derived from alignment at C-tenellus_contig814:9815..10012+ (Choristocarpus tenellus KU2346)
ATGTCAAAGGTCTTTCAAAAGGTGACCATGGAAGGATGGACGGATGTAAT
GTACATGTGCATGGATGCCTACAGTCCATGGGCCTCATCCTCTATATGGG
TTCTCCTCATTCTCCTGGGATCATTTGTGATGCTGAACCTGGTCCTTGCA
GTCATCACCGAGTCTATCAGTGATGCTGATGAGGAGGCGGTAAGATGA
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