mRNA_C-tenellus_contig8135.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8135.1.1
Unique NamemRNA_C-tenellus_contig8135.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8135.1.1 vs. uniprot
Match: A0A836CFQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.480e-9
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 3 
Query:  219 SQVYEKNMHDTMSQMPTLRRQRLQGFERVFKLVCTQDDARQRRQKVYDFFRGNISRQNLYQANEVGYIMNELLV 440
            ++VYEKN+H TM++   LR+ R +   +VFKL+  +D AR+RRQKV++ FR NISR N +Q   V  + +E+LV
Sbjct:   42 AKVYEKNIHQTMTKFLDLRQSRKEEMYKVFKLISEKDHARERRQKVFEHFRDNISRVNSFQTGTVYEVTHEVLV 115
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BLAST of mRNA_C-tenellus_contig8135.1.1 vs. uniprot
Match: D7G572_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G572_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.340e-7
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:  225 VYEKNMHDTMSQMPTLRRQRLQGFERVFKLVCTQDDARQRRQKVYDFFRGNISRQNLYQANEVGYIMNELL-VLEEGEQNLTINV 476
            VYE N+HD M QMP  R +R + FERV  L  +   A+ RR KV+++F   +++ N +Q  EV  +  +LL VL+E  + L + V
Sbjct:  104 VYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLV 188
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BLAST of mRNA_C-tenellus_contig8135.1.1 vs. uniprot
Match: D8LEA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA5_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.530e-6
Identity = 23/36 (63.89%), Postives = 32/36 (88.89%), Query Frame = 2 
Query:  902 ESREMLDRLFAWCTLCLPANDHPMSVAHRKKLIMFQ 1009
            E RE++DRL +W T+CLPANDHP+SV+HR+KL +F+
Sbjct:  102 ELRELMDRLISWLTMCLPANDHPLSVSHRRKLKLFK 137
[Close]
BLAST of mRNA_C-tenellus_contig8135.1.1 vs. uniprot
Match: A0A836C7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-5
Identity = 35/99 (35.35%), Postives = 59/99 (59.60%), Query Frame = 3 
Query:  180 SRQTWKRQVSYCLS-QVYEKNMHDTMSQMPTLRRQRLQGFERVFKLVCTQDDARQRRQKVYDFFRGNISRQNLYQANEVGYIMNELL-VLEEGEQNLTI 470
            +R+  +RQ+++    +VYE+N+H+TM ++P LR    Q + +   L  T D A+ RR KV+ FF  NI+    YQ ++V  +  E+L VL+E  + L +
Sbjct:   11 ARKKLRRQLTHEADIKVYERNIHETMQELPKLRDACEQDYTKCVTLFSTDDSAKDRRTKVFAFFDANITEATSYQTDQVFKLSEEVLSVLDECRELLEL 109
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CFQ5_9STRA3.480e-947.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G572_ECTSI7.340e-740.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEA5_ECTSI3.530e-663.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7X8_9STRA1.550e-535.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8135contigC-tenellus_contig8135:26..3788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2693
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001510.1
Cds size348
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8135.1.1prot_C-tenellus_contig8135.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8135 2204..3621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790082.2699745-UTR-C-tenellus_contig8135:25..22031680790082.2699745-UTR-C-tenellus_contig8135:25..2203Choristocarpus tenellus KU2346UTRC-tenellus_contig8135 26..2203 -
1680790082.3341317-UTR-C-tenellus_contig8135:3621..37881680790082.3341317-UTR-C-tenellus_contig8135:3621..3788Choristocarpus tenellus KU2346UTRC-tenellus_contig8135 3622..3788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790082.279808-CDS-C-tenellus_contig8135:2203..23241680790082.279808-CDS-C-tenellus_contig8135:2203..2324Choristocarpus tenellus KU2346CDSC-tenellus_contig8135 2204..2324 -
1680790082.2896793-CDS-C-tenellus_contig8135:2783..28241680790082.2896793-CDS-C-tenellus_contig8135:2783..2824Choristocarpus tenellus KU2346CDSC-tenellus_contig8135 2784..2824 -
1680790082.3021712-CDS-C-tenellus_contig8135:3015..30671680790082.3021712-CDS-C-tenellus_contig8135:3015..3067Choristocarpus tenellus KU2346CDSC-tenellus_contig8135 3016..3067 -
1680790082.3212657-CDS-C-tenellus_contig8135:3487..36211680790082.3212657-CDS-C-tenellus_contig8135:3487..3621Choristocarpus tenellus KU2346CDSC-tenellus_contig8135 3488..3621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8135.1.1

>prot_C-tenellus_contig8135.1.1 ID=prot_C-tenellus_contig8135.1.1|Name=mRNA_C-tenellus_contig8135.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=116bp
MVPYSRQTWKRQVSYCLSQVYEKNMHDTMSQMPTLRRQRLQGFERVFKLV
CTQDDARQRRQKVYDFFRGNISRQNLYQANEVGYIMNELLVLEEGEQNLT
INVQQGTLLYFCSST*
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mRNA from alignment at C-tenellus_contig8135:26..3788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8135.1.1 ID=mRNA_C-tenellus_contig8135.1.1|Name=mRNA_C-tenellus_contig8135.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3763bp|location=Sequence derived from alignment at C-tenellus_contig8135:26..3788- (Choristocarpus tenellus KU2346)
TGCTGGAACAAAGATGGAGGACGATCTTCCGGTCTTGGACTTGCTTCAGA
AATCGCTTACCTTTGCTGAGGCTGATCCCAAGGTGGGTGATAGGAATGCA
GGGAAGACTTGACACCACAAAGTGAGACAGCCTCTTTTAATCAGCTGGAA
GAGGGCAAGGGCATTGGATGGTACCTTATTCGCGACAGACATGGAAAAGA
CAGGTTTCCTATTGTTTGTCTCAGGTCTACGAGAAGAACATGCATGACAC
CATGAGTCAGATGCCTACTTTGCGGAGGCAGAGACTACAAGGCTTCGAGA
GGTGAGTTTTCATCTCTTGGTTGAGATGTGCACCTTTTGCAAGAATTGAA
AAGCTTTTGTCATTGAGCAGTCGGGACACCACAAGGCTATAACAAGAAGG
ATACATCTTGATGTTTTTGGATAGTGAACCTGCTGAATTACCACGAGACC
TTGGTCCTCTTGCTCAATTCCAGCTACCTTCGGACACCTGTCACAAAGCT
ATCTTCAAAACACGTGTGTAGTGTAGTGTGGGATCGGGGGGGGCTCAAGG
TGTGGTCTTGCGTGGGCGCTTTTCTCTTCTTCTACCTACTGTGTGCTGGC
GATTGGACCTTCATACGCTTTAGTTGATATTTTCCTCTGGTCACAAAGAT
TTTTAGAAGCTGCCTTATTGTACTGTTCGTAGCTCAAGAATCGTCGTTTG
CCCAATCTCGTCCGGCTCCAGGGTATTCAAGCTGGTGTGCACACAAGACG
ACGCCCGACAAAGAAGACAAAAGGTACCTCTTGGAATGAATCTCGTTGAT
TGGGGACATTTAAGGAACGATATGTTTGGTTAAGCTCGGGCTTACGATTC
TTGCATGAGGCACTTAATGACTTACAAAGACAACTGCTTCAAAATGCCCT
CTCCTCGTCGCGTCGCCACCTGTTACACCACCTGCTACCAACTCCGATCA
TCACATCTGATTAGGTGTACGACTTCTTTCGAGGCAACATCAGTCGGCAA
AACCTGTGAGTTTTGTCACCAACCCATCTCTCTCTTCCCCATCCACGCTC
TCTGCTGTATTTCTCGGTGCTCTTTCCATAAAGGTTGGGTTCTAACTCTT
ACTGCTTTAAAGAATCAGTGTTTTGAGAAGGTGAACACATAAACCACAAC
CCTAGACAGCAGCAGTTCAGTGGTCAAGTACTGTAGTTGTAGTAGTGAAT
GGCCATTGAGAAGTTTTTTCGTTTAGACCCTTGTGTTTTACTCCCATGGC
AAATTCAGTGCACCTCTTCAAGGTACAAATGTGACCACTGGTCGATCCTT
GCGGATGTTAGAATTAGGGTTAAACGGTTCTGCCTTGATTGCTTAGCTAC
GGTATTGATAGTACTAAGTCCTTGTACACAGTTCAAATCTTTCGGTAAAG
CTTGTGGGTTAAAGCATTTATTTGTCTCACTTGCACCAACCAAACCACTA
ATCTTTATATCTAGGTACCAGGCCAACGAGGTCGGCTACATCATGAATGA
GCTGCTGGTACTTGAAGAAGGTGAACAAAATTTGACCATTAACGTACAGC
AAGGTACTCTTCTGTATTTTTGCAGTTCCACATGAGCACAGTGATTGTGA
TTTTGAGAGGCCTGGGCACATGTAACATTCTCACAGGTTGCTCTCACAAG
GACAATGGGGTGGACCCTTTCCACTGATGGGATATGCCATCAGTTCGTTG
ACCCTAGGTTCCTAGGTTGTTGTCTAAGATACCTTTAAGCTCTCTTCACT
GTAAGCTAGCTCTCCTTGCACCATGCTGTCTCGCCTGCCTCTGGCCCTTC
CCCGTGCTCTCCCCCTGGACTGCATCTCACTTTTGTCCTACTGCCAGTGT
GTCTCAGGTCATTAACCGCCATTACCGTACCATTGAAGTGCTTTTCTCAG
TATTGCTGTCCTTACACCCATCTCACACACGCCCCTCGCTCGTCCCGCTG
CCTTCACCGGAATGCAAGCAAGAGTCTAGAGAAATGTTAGATAGGTTATT
TGCATGGTGCACCCTGTGTCTGCCTGCAAATGACCATCCCATGTCCGTCG
CCCATCGCAAGAAGCTGATTATGTTCCAGGTGAGCACGCCATGAATGTAA
TTTAGACTATCTTGTTGTATCGATGATGTGCTCTTATTACTTTTTACTCT
ACTGCGTAGTATTGCTGGCTGCTCTGTTGCCAATAGTTGCATTGAACTTC
AACAATCACTTCGAATTAATGTTCTAGTAGGTGTTCCAGCAGGGTGATCA
GTTGCGTTTTGAGAGGAAATGTCAATGTTCTTGATTTGTGGTTGACCCCC
CCCCCTCCCTCTCACCCCGCTCACCTCCTACTCCTTGCTATCCCCACTCC
TTCATGCCCCATATCCTACAACCGTTGGTTGAGGCTCCTGTTGATGAGGG
TCCCTGGCAGAGGGCATGGTGATAAGTAGGTGGAGTGTGGATTTTATTAT
TTCCTACTGGGTGTGTTTGTGGGCAAAGAGATGGGGGTCGACGCAATGTT
TATTTTGCGACTTATTACAGCTATGGTTATTATCGTGTTGAAAGATGTAT
GATGTATGATGTATGATGGCATGGGGTTTGACAGTGAACAAGGCATGTCA
ACTTAAACTGGCTTAGGAGTGGGGGTATATTGGTTGCTTTATCCACTGGG
TGCCTTGAGATGGGTACATATTTGTGTGAGCAGTAGGTGAGGACTATTTA
GATTGTTGTTCTTAGTAATAGTGTCTACTGAAAGACCCAACATAGTGTGT
ATCAGGGAAGGCATGCACTCCTTGTAGAGGCATATCGATATTTGACTCTC
TTTTTGAATATACAGCCTCATCCTTGATGTGGATGGATGGGGGCATAAAA
ATCCAGAGTGGGCACAAACTGGAACTCCTGTGAAGAGTGTCTCGACCCCC
CTCAATGTAAAGTCTTCCAATATGTTGGAAAAAAAAAATGTTACCTCACA
AAAAAAGCAAGGCGAGAGCAAGAAGAGACTATTGCATTTGTAGTAGCGTT
CGATATCAGAAGGAGACAAGAAATAAAAACGCCTCTACTTCCACAACATT
GCTTCGATCTTTGGGGAGTATTAATAGCATAATTGAGTCAGACTGTAACA
AACTGATAAGTTGATCCTCCCTTTTCATGGAAGAGACATTTGTGGATTGG
AGGGTTGAGGTAAGATGAATTATGTGATCAGCAGCGGTGTTGATGGGTCA
ACGCTGTCGAACCGGAGAGTGTGTGTTCTGGAAAGCACCTCACTGTGATT
TATTTAAGAAACCTACTTTTTATAATTCTCTTTTTGATATGCCTCGAGAA
ATTGGCATGAAACACGTAGCTTTGCATCTCAGAACACCCACATCTGATGC
CCATACCTGACTTCTAATGATAAGGTCCTTTGCGATACATGGTTTGGGTG
GTACAATTACTTCGTCGATTTGATGTCAGCAGAAATTTCATACATCAGAG
TATCTGGTCACACGGCTGATGGTTTGTGACCCAAGGGACGAGGGTCGGGG
GGTGGGGGGTGGTATTTAATCACCACCTGGCAATCAACGAGAATTTTCTT
TTAAAGCGGAACGATTGCTCGAGGTCATTTTGAAAGCGATGTTTTTTTTT
ACGGTGCATTTTGTCATCAGTGTCAATCTATCAAACTGCGAGCATGAATT
GACAAAGTTTGGTGGAGTTTTGCAAACAGTCTTCAATGTGATGTAGGTTG
GGAGGTCGAGGTCGAGGTGGAGAGTCCCTGCACCATTGCTCGTCCTGACA
AACAAACGTCCAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8135:26..3788-

>mRNA_C-tenellus_contig8135.1.1 ID=mRNA_C-tenellus_contig8135.1.1|Name=mRNA_C-tenellus_contig8135.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=348bp|location=Sequence derived from alignment at C-tenellus_contig8135:26..3788- (Choristocarpus tenellus KU2346)
ATGGTACCTTATTCGCGACAGACATGGAAAAGACAGGTTTCCTATTGTTT
GTCTCAGGTCTACGAGAAGAACATGCATGACACCATGAGTCAGATGCCTA
CTTTGCGGAGGCAGAGACTACAAGGCTTCGAGAGGGTATTCAAGCTGGTG
TGCACACAAGACGACGCCCGACAAAGAAGACAAAAGGTGTACGACTTCTT
TCGAGGCAACATCAGTCGGCAAAACCTGTACCAGGCCAACGAGGTCGGCT
ACATCATGAATGAGCTGCTGGTACTTGAAGAAGGTGAACAAAATTTGACC
ATTAACGTACAGCAAGGTACTCTTCTGTATTTTTGCAGTTCCACATGA
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