mRNA_C-tenellus_contig805.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig805.6.1
Unique NamemRNA_C-tenellus_contig805.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig805.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig805contigC-tenellus_contig805:13801..14426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size626
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790077.3115005-UTR-C-tenellus_contig805:13800..140021680790077.3115005-UTR-C-tenellus_contig805:13800..14002Choristocarpus tenellus KU2346UTRC-tenellus_contig805 13801..14002 +
1680790077.33502-UTR-C-tenellus_contig805:14335..144261680790077.33502-UTR-C-tenellus_contig805:14335..14426Choristocarpus tenellus KU2346UTRC-tenellus_contig805 14336..14426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790077.3250813-CDS-C-tenellus_contig805:14002..143351680790077.3250813-CDS-C-tenellus_contig805:14002..14335Choristocarpus tenellus KU2346CDSC-tenellus_contig805 14003..14335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig805.6.1prot_C-tenellus_contig805.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig805 14003..14335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig805.6.1

>prot_C-tenellus_contig805.6.1 ID=prot_C-tenellus_contig805.6.1|Name=mRNA_C-tenellus_contig805.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MSIFSSFSSEYSRSYLSSSLSPFPVSLCLSLGHFHGSVASNINLAGLNSF
DSRLLSSEIWIRVCYSTLQAQRIVHLYHNITSCLWLYHKKSPTKIKPGTL
GQVQQKIRGS*
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mRNA from alignment at C-tenellus_contig805:13801..14426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig805.6.1 ID=mRNA_C-tenellus_contig805.6.1|Name=mRNA_C-tenellus_contig805.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=626bp|location=Sequence derived from alignment at C-tenellus_contig805:13801..14426+ (Choristocarpus tenellus KU2346)
AAAGTTCTAGTAGGTTAAATAAAAGAAAAACATTAGAAACAAAATCAAAG
GTCCTCTACTTCCACCTGATTGCTTCAATCCTCAGGTAGTATATTGGAGT
GAGACCATAGCAAATTGGTGGTTGGGCCTCCCTTGGTATGGAAGCAATGC
GTATGGATATAAAGGGGGTGGGGTAGATTTGAAAACAAGATTTGCAGCAT
CAATGTCAATCTTCAGTTCTTTCTCTTCTGAGTACAGTCGATCATACTTG
AGCTCCTCTTTATCACCCTTCCCTGTCTCCTTATGTTTGTCATTGGGGCA
TTTTCATGGCTCTGTGGCCTCCAACATTAACTTAGCGGGTTTAAACTCCT
TTGACTCAAGACTCCTTTCCTCAGAAATCTGGATTCGAGTATGCTATTCC
ACATTGCAAGCACAACGGATTGTACACCTGTACCACAATATTACATCCTG
CCTGTGGCTATATCACAAAAAAAGCCCAACCAAAATCAAGCCGGGAACTT
TGGGTCAGGTCCAGCAGAAGATTCGAGGTAGTTGACAGATTGATGTGCGG
TGAGAGAGTCCTGAACCCAATTGGCGAGAGTGAAGGTAGGGTACAATTTA
TCGTAGTGCAACAGTTAGTTTTGTCG
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Coding sequence (CDS) from alignment at C-tenellus_contig805:13801..14426+

>mRNA_C-tenellus_contig805.6.1 ID=mRNA_C-tenellus_contig805.6.1|Name=mRNA_C-tenellus_contig805.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig805:13801..14426+ (Choristocarpus tenellus KU2346)
ATGTCAATCTTCAGTTCTTTCTCTTCTGAGTACAGTCGATCATACTTGAG
CTCCTCTTTATCACCCTTCCCTGTCTCCTTATGTTTGTCATTGGGGCATT
TTCATGGCTCTGTGGCCTCCAACATTAACTTAGCGGGTTTAAACTCCTTT
GACTCAAGACTCCTTTCCTCAGAAATCTGGATTCGAGTATGCTATTCCAC
ATTGCAAGCACAACGGATTGTACACCTGTACCACAATATTACATCCTGCC
TGTGGCTATATCACAAAAAAAGCCCAACCAAAATCAAGCCGGGAACTTTG
GGTCAGGTCCAGCAGAAGATTCGAGGTAGTTGA
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