mRNA_C-tenellus_contig7985.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7985.1.1
Unique NamemRNA_C-tenellus_contig7985.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7985contigC-tenellus_contig7985:2..1813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1132
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006590.1
Cds size807
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790073.4447837-CDS-C-tenellus_contig7985:1..6851680790073.4447837-CDS-C-tenellus_contig7985:1..685Choristocarpus tenellus KU2346CDSC-tenellus_contig7985 2..685 -
1680790073.4568093-CDS-C-tenellus_contig7985:997..11201680790073.4568093-CDS-C-tenellus_contig7985:997..1120Choristocarpus tenellus KU2346CDSC-tenellus_contig7985 998..1120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790073.468617-UTR-C-tenellus_contig7985:1120..12541680790073.468617-UTR-C-tenellus_contig7985:1120..1254Choristocarpus tenellus KU2346UTRC-tenellus_contig7985 1121..1254 -
1680790073.4804616-UTR-C-tenellus_contig7985:1622..18131680790073.4804616-UTR-C-tenellus_contig7985:1622..1813Choristocarpus tenellus KU2346UTRC-tenellus_contig7985 1623..1813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7985.1.1prot_C-tenellus_contig7985.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7985 2..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7985.1.1

>prot_C-tenellus_contig7985.1.1 ID=prot_C-tenellus_contig7985.1.1|Name=mRNA_C-tenellus_contig7985.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=269bp
MSSSSITPADNILRSAIQEVTRPHPGMSPSKVMAGLRKNRPDWTVNKRRV
KKLLRDIKNETCQATMQSNTHANPAEDDDMNPFSNVGGAQVVEDEEQEGF
EVGENTGVDPLRAIIPRSNDQGDGLASDGSSHCTEGSCDTFPTSPIHREM
DTPVASAVVPGTVFVNVNMEPSLTEPVHLSNGEVEVAEGDKEEGGGEGLV
EYVGEATQGLDQSLHLEPGLELEPDFNLGRELGLASCLPCIPVLDERVCM
EEVNMGGLEEGEGGGVIKE
back to top

mRNA from alignment at C-tenellus_contig7985:2..1813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7985.1.1 ID=mRNA_C-tenellus_contig7985.1.1|Name=mRNA_C-tenellus_contig7985.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1812bp|location=Sequence derived from alignment at C-tenellus_contig7985:2..1813- (Choristocarpus tenellus KU2346)
GAATTGGCCAGGAGTGACACTCACCCATAATCAATGACAATCGTGCGTCA
TCACGTATAATAAGTACCCAACAACAAACCATCCGCAACAAGCAGGGTTA
GGGCTAGCTGGCCGTTACGTCATTGGAAAGGAGATGAAGTAAAGGCGTGA
ACAGATCGAGATTTCACACGACAAATTCGCGATCACAACAGGTACGATTC
ACGGCTTACTAGGACACCCCCTTCCTTACGGGTGAGGGATTAGCCAAGTC
TGTGTTGAGTTAGGTATCAATTGACCTGTTGGTACCGTTGACATTGTTCT
AGACATTTGGATTGCAAAGGGCATGGGGAGTTGCCACATGGAGCTGGGCT
ATACACATCAGAAAGTAGTTGGCAATGCGACACCCCGATTGGTATACAGT
TCTTGCACTATCTAATTTAAAAGTCTCTCTCAATTCTGTACTGTGTCCTC
TATCCCTGAGCATCTATTGACGCAAGTGACGGTTGGCATGTCTGGGGAAG
TCGTTCCGCCGAATAATCTATTCACACCACCGCCCCTTTTGTCTCCACCC
CCTTCTCAGAGTACGCTCACGGAGATCTTTCAGCACAAAGAAGAGCCCAA
GCTCAAGTTACTCAATCAAACGTTGTACCTTGGTGTCTGGATTGGCCTGA
CCTGGCCGCCGTCTAAGTATTCCACCCCACACGGTACATCAACATGTCTT
CCAGCAGCATCACCCCTGCCGACAATATCCTGAGGAGCGCTATCCAAGAA
GTGACACGCCCCCACCCTGGCATGAGCCCTTCTAAAGTGATGGCCGGATT
GCGAAAGAATCGGCCGGTACGTGGTTTCCCAAGGCATGTGTTCGGGATGC
AAAAATCGAACCTCTGTGTATTCCTCTGTGTGTACTCCTCACTGCAGTTC
TTTGTGTTGTGCTAACTCTGCCCATTCCAGGCGACGAAATCCTCGCAGTG
CTGTATTACAGGCAAGAAACTCTATTAAACAGCAACTGTTGTAACATGCA
AGGTGTATTGCAGACCGCAGTCGAATTGGCGTTCGAAAAGACCCGTTACT
TCGCTCAACAAGATTCTCCCACTTACTGATAAATTGTTCCTTTGCGTGTG
CATTATTTCGTGTCCTCCCAACCTTCAGGACTGGACTGTCAATAAGAGGA
GGGTAAAGAAATTATTGCGCGACATAAAGAATGAAACTTGCCAGGCTACA
ATGCAGAGCAACACTCATGCCAATCCTGCAGAAGATGATGACATGAACCC
CTTTAGCAATGTGGGTGGTGCGCAAGTAGTTGAAGATGAGGAGCAAGAGG
GGTTCGAGGTGGGTGAAAATACTGGGGTAGATCCACTGAGGGCTATCATC
CCTCGCAGCAATGATCAAGGCGATGGTTTGGCTAGTGATGGGAGCAGTCA
TTGCACGGAGGGCAGTTGTGACACATTTCCTACGTCTCCCATTCATAGAG
AAATGGATACTCCTGTGGCATCAGCGGTTGTGCCAGGGACTGTGTTTGTA
AATGTAAATATGGAACCATCACTCACTGAGCCAGTTCATTTAAGCAATGG
GGAGGTGGAGGTGGCAGAAGGGGACAAGGAAGAGGGAGGAGGAGAGGGCT
TGGTTGAGTATGTGGGAGAGGCTACGCAAGGCCTGGACCAAAGCTTGCAC
CTGGAGCCTGGCTTGGAGCTTGAGCCTGATTTTAATCTAGGTAGAGAGTT
GGGTCTAGCCTCTTGTCTTCCCTGCATCCCTGTGTTGGATGAGAGGGTTT
GTATGGAGGAGGTGAATATGGGAGGATTAGAAGAGGGGGAGGGGGGGGGG
GTGATAAAGGAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7985:2..1813-

>mRNA_C-tenellus_contig7985.1.1 ID=mRNA_C-tenellus_contig7985.1.1|Name=mRNA_C-tenellus_contig7985.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=807bp|location=Sequence derived from alignment at C-tenellus_contig7985:2..1813- (Choristocarpus tenellus KU2346)
ATGTCTTCCAGCAGCATCACCCCTGCCGACAATATCCTGAGGAGCGCTAT
CCAAGAAGTGACACGCCCCCACCCTGGCATGAGCCCTTCTAAAGTGATGG
CCGGATTGCGAAAGAATCGGCCGGACTGGACTGTCAATAAGAGGAGGGTA
AAGAAATTATTGCGCGACATAAAGAATGAAACTTGCCAGGCTACAATGCA
GAGCAACACTCATGCCAATCCTGCAGAAGATGATGACATGAACCCCTTTA
GCAATGTGGGTGGTGCGCAAGTAGTTGAAGATGAGGAGCAAGAGGGGTTC
GAGGTGGGTGAAAATACTGGGGTAGATCCACTGAGGGCTATCATCCCTCG
CAGCAATGATCAAGGCGATGGTTTGGCTAGTGATGGGAGCAGTCATTGCA
CGGAGGGCAGTTGTGACACATTTCCTACGTCTCCCATTCATAGAGAAATG
GATACTCCTGTGGCATCAGCGGTTGTGCCAGGGACTGTGTTTGTAAATGT
AAATATGGAACCATCACTCACTGAGCCAGTTCATTTAAGCAATGGGGAGG
TGGAGGTGGCAGAAGGGGACAAGGAAGAGGGAGGAGGAGAGGGCTTGGTT
GAGTATGTGGGAGAGGCTACGCAAGGCCTGGACCAAAGCTTGCACCTGGA
GCCTGGCTTGGAGCTTGAGCCTGATTTTAATCTAGGTAGAGAGTTGGGTC
TAGCCTCTTGTCTTCCCTGCATCCCTGTGTTGGATGAGAGGGTTTGTATG
GAGGAGGTGAATATGGGAGGATTAGAAGAGGGGGAGGGGGGGGGGGTGAT
AAAGGAG
back to top