mRNA_C-tenellus_contig7972.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7972.1.1
Unique NamemRNA_C-tenellus_contig7972.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.570e-30
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 3 
Query:  390 LNVVCNDVVKTILRGQDDDVK----ALHGRLLGHRDEIVL--DEMSGIFFENLLLVCKHELHPDVDKLKGRYSKAWTTILHYIEDAGWQLTDPPFRVMG 668
            LN+ CNDVV+TIL G   + K    AL  RL+  +D++V   D+MS +FF+NLLLVC+HELHPD+  L+G+Y KAW TILHY+EDAGWQLTDPPF + G
Sbjct:  101 LNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.990e-25
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  381 QRLLNVVCNDVVKTILRGQ----DDDVKALHGRLLGHRDEIVL--DEMSGIFFENLLLVCKHELHPDVDKLKGRYSKAWTTILHYIEDAGWQLTDPPFRVMG 668
            Q+ LN+ CNDV+KTIL+      D D++ +  RL+  ++ +V+  D  S +F+ NL+ VC+H LHP + +LKGRY+ AW ++LH+IEDAGWQLT+PPFRV G
Sbjct:   55 QKHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
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BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Match: A0A1X6PH35_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PH35_PORUM)

HSP 1 Score: 58.9 bits (141), Expect = 5.520e-6
Identity = 42/155 (27.10%), Postives = 60/155 (38.71%), Query Frame = 3 
Query:  384 RLLNVVCNDVVKTILRGQDDDVKALHGRLL--------------------------------------------------GHRDEIVLD----------EMSGIFFENLLLVCKHELHPDVDKLKGRYSKAWTTILHYIEDAGWQLTDPPFRVMG 668
            R +N VCN+VVKTILRG D DV AL  RL+                                                  G RD  + D          +   +F   ++ +  H L P V  L G Y++A+  ++  +EDAGWQ+T P  ++ G
Sbjct:   50 RRMNEVCNEVVKTILRGSDADVVALRNRLVESAADFVTPSASPDAAAGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXATGPRDAAIADGAPPPAPPAVDAGVVFHACIVALLDHTLSPAVPTLCGPYARAFEGMVRLVEDAGWQITAPVMKITG 204
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4T6_ECTSI1.570e-3059.60Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA1.990e-2550.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1X6PH35_PORUM5.520e-627.10Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7972contigC-tenellus_contig7972:235..3410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3016
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.8971329-UTR-C-tenellus_contig7972:234..3801680790072.8971329-UTR-C-tenellus_contig7972:234..380Choristocarpus tenellus KU2346UTRC-tenellus_contig7972 235..380 +
1680790072.9371092-UTR-C-tenellus_contig7972:1047..26411680790072.9371092-UTR-C-tenellus_contig7972:1047..2641Choristocarpus tenellus KU2346UTRC-tenellus_contig7972 1048..2641 +
1680790072.9533098-UTR-C-tenellus_contig7972:2659..34101680790072.9533098-UTR-C-tenellus_contig7972:2659..3410Choristocarpus tenellus KU2346UTRC-tenellus_contig7972 2660..3410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.906722-CDS-C-tenellus_contig7972:380..5781680790072.906722-CDS-C-tenellus_contig7972:380..578Choristocarpus tenellus KU2346CDSC-tenellus_contig7972 381..578 +
1680790072.925282-CDS-C-tenellus_contig7972:720..10471680790072.925282-CDS-C-tenellus_contig7972:720..1047Choristocarpus tenellus KU2346CDSC-tenellus_contig7972 721..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7972.1.1prot_C-tenellus_contig7972.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7972 381..1047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7972.1.1

>prot_C-tenellus_contig7972.1.1 ID=prot_C-tenellus_contig7972.1.1|Name=mRNA_C-tenellus_contig7972.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=175bp
MRWWWVSILSTAAPGLSFTVPITHSRSWPLLPVGTLQINDQGVHRWHESL
STTQAKLWRPLPMQLNAQDQQVGDPDSQQRLLNVVCNDVVKTILRGQDDD
VKALHGRLLGHRDEIVLDEMSGIFFENLLLVCKHELHPDVDKLKGRYSKA
WTTILHYIEDAGWQLTDPPFRVMG*
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mRNA from alignment at C-tenellus_contig7972:235..3410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7972.1.1 ID=mRNA_C-tenellus_contig7972.1.1|Name=mRNA_C-tenellus_contig7972.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3176bp|location=Sequence derived from alignment at C-tenellus_contig7972:235..3410+ (Choristocarpus tenellus KU2346)
GTAAAGTATATAAAATTGCTACAGAATAACCTCTGTCGAAGAAATATAAC
AGATTACAGACCCAGAACCACTATTGTACTCCAGATCCATCAGTTCAAGA
CTCCTGTTCACATAAACATCTTGATAGCACCCCACTAATCAAAAGGATGC
GGTGGTGGTGGGTGTCTATCCTGTCGACAGCAGCGCCTGGTCTCTCTTTT
ACCGTCCCTATCACTCATTCACGATCATGGCCCTTGTTGCCTGTAGGAAC
ATTGCAGATCAATGACCAGGGGGTTCATCGATGGCATGAGTCATTGTCAA
CTACACAGGCAAAGCTTTGGAGACCCCTCCCGATGCAACTGAATGTGGGT
CCTGCTTAAGTACCAAACTTCCTCTTCGAGAGTGTACCTCTCGACCAAGC
TATTTGCCTCGAATAGTCAACTGAGTTGCATGTCTCATCTCAATGTTCCC
CCATCGTGTTGGGCGCTTTCGTTCCTGTTGTTCCAGGCCCAGGATCAGCA
AGTAGGTGACCCCGACTCACAGCAGCGTTTACTGAATGTGGTTTGCAATG
ACGTCGTCAAGACTATCCTTCGTGGACAAGACGATGATGTGAAGGCGTTG
CATGGGAGGCTGCTAGGGCACCGTGATGAGATCGTTTTGGATGAGATGTC
AGGTATTTTCTTCGAGAACCTCCTTCTTGTTTGCAAGCACGAGCTTCACC
CCGACGTGGATAAGCTCAAGGGTAGATACTCGAAGGCATGGACAACCATC
TTGCATTATATCGAGGATGCAGGTTGGCAACTAACGGACCCTCCATTCAG
AGTTATGGGATAGCGTGTTCAGGGAGACTCGTCAGGTAGTTGTCAAGAAC
TAGGTAGACTCTGGACATCTAGAGTGGTGGATAGAGAATTAGAGTTTCTC
ACAGGTGAGAAATCTTCTTATCAACAGGCCTCATCTGTCTTTTGATTGTG
TAGTTTTACCCCTGCTATGTGGACCCCGTTAGGTGTTACTGTGTTTAGAA
GAAGAACTTATTCTCAACTTGTGGCAAATCGCCTCTGCCTGTAAGGCATC
GTCGATCACAGTGGAGCATCATTCCTACTCATATGTGCGCTAGATACAGC
ATTGTATTTCACTTTGTTGTACTATGCAGATCAAAGATCAGTTCTGGAGC
TCTGTGCCCTATCAGTCGCACTTCTAACGACCATGTGTTCCCCTTCCATC
TGAAGAGGAACCCCTTTGCTTGGAATATTATCAAAACATGAACATTGCTG
AGGTCAATTGATCCACTTAAATACAAAGAAACGATATTGCCAATGCATAG
ATGAGATGTGAAGTGACTCTGCCCACAAGCTGATGCTAAGTTTTGTGGTG
AAGCTCTTCATTCTATCAATACTCGTCTCTACAACAAGCTCACTGTTGAA
AAGCCCCAGCCTGTATAATATGAGCAAATCCACTCCCATACCGACATCAA
GTGGTGCGCAGATCTAGCAATTGTTGATGACTGCCAACAAAACTGCCAGA
GGCTGTTGCATTACCTAATTCTGCTGAAAGCAGCAAATGGCTAGTGAATA
TCAAAGGGTCTTTATCCCTAAGAAAGCTTCAAAGCCTAACCCTACCCTCA
GAGAACAAAGCCTTATGACCCAACCTTCCCTTTGGTCTGCAAGTCGTGGG
ATGACAGTCTTGATGGTCCAGGTCGGCTGGTTGCTTGAGGCCACACCTCT
CCGATAGCCATCCATGCTCTCACCTTGGATGAGTGAGGTCGGCATGTTAC
TACTGTGCTTTTGTTGGCAGCAGTATCCAAGTGTTTGTCACAGGTCATCA
TGTTCTTTTGTTTCTAGTATATCAGAGAGTCGCCATTCATTGCACTCAAA
ATTAGTTTTCAAGATGCAACCTTTGACTAAAAATTGCATCTTCTGCAATT
AAACCACCTGCCTGCTAGAAGGATTGCAATCCTTCCCGGGTGTAGGTTAG
TGTGAGCTTTTTTGCATGTAGGAAATATTGCACTGTGATTTCCCTCTAGA
TATTCAGATTATTTTACTGAATAGTGTACATGCAGGTAATTTGGTCAAGG
GGTCATGCCACTGGAATTAGGGGGGGGGGGAATATCCGTACTGCCAATAC
AGCTAACAGGCACTATCAGCTGCAGAGTTCTTATGGTGTTATTAATTCAT
GATGTGATTTTTTTGGAATGGTTGATGGAATGTGATAGGTTTTGGCTATG
TTATTGATGATTTGCTTGAGGAGTAAACTATGCTTAGATGTGGAGCTCTC
TATAGTAGGGCCTAAAATGTTGTATTGTAGTGGTATCTGTGGGGTAGCTG
AGGGATTATTTTTTTCGTAGACCAGGAGCAGGGCACTTGGGTCTGCAGCT
TTGCAGACAAAAAATGTGTAGGTGCTCCTTCCATGTTCAGTTTGAAGTTT
TAGAGATGCTTTCATCCTACGTGAGACCGATTTGGTGCTGGTGATGGGTG
CAGTGGTGCCTCTTGAGTTGTGGTACCTGTTGACTAAAGGTGATGTGAAG
TGGTTTTGAAGTAATCTTTTCAGGATCATTATCAATATACCTTGTGTTGT
CATGGTGCTTGCTGGGAAGTTGTCTGTGCACCCATGAGGTCATGGTGTGG
GAAGGGCATTCCAAATTTGAACCATCAGTTATTGCAGCAACACTGCCATG
CTGCTGCCCCAACCCTATCCCTAACCCTAACCAAGGTGCTCTCCCCTCCT
ACCATGCTACTGGATATTTGGCCATAGTGTAATGGTGAAAAGCACGCCTG
CGCCCCGAAACAGAATGCACACAGTTGCACATGACTACACACACCTTTGG
ACCTGATTTGATCCAGCCTTTTGGGTCTGTGAAGAGGTGGGTGTCACTCT
TTCGGGGTGGAAGCTCTCTAGGGGGCCTCCCTGTGTAGGGTCCTGAAAAT
GCATCCAATGAAGAGATGAGATCTATCACTGGTCAGGGGTTTCTCCGAAG
TGAGAATTGATAGTGTTTCTTACTCCAAAGTACGTTTTTTTAAATGTACA
TTTTTTTTTTCTTGTGCATATTTTGATTTTTTGTATTTCAATTTCTCAAT
CTGCCAGAGTTTCTACTTCGTTGCCCTTTTGGAGCTGTTAATCGCTACTT
AATAATAGCGTTTATGATGGACAAAAAAAAAAAATTACAAGCAAGAGGTC
GTCAGGGAAGTGCACATGTAGTCAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7972:235..3410+

>mRNA_C-tenellus_contig7972.1.1 ID=mRNA_C-tenellus_contig7972.1.1|Name=mRNA_C-tenellus_contig7972.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=525bp|location=Sequence derived from alignment at C-tenellus_contig7972:235..3410+ (Choristocarpus tenellus KU2346)
ATGCGGTGGTGGTGGGTGTCTATCCTGTCGACAGCAGCGCCTGGTCTCTC
TTTTACCGTCCCTATCACTCATTCACGATCATGGCCCTTGTTGCCTGTAG
GAACATTGCAGATCAATGACCAGGGGGTTCATCGATGGCATGAGTCATTG
TCAACTACACAGGCAAAGCTTTGGAGACCCCTCCCGATGCAACTGAATGC
CCAGGATCAGCAAGTAGGTGACCCCGACTCACAGCAGCGTTTACTGAATG
TGGTTTGCAATGACGTCGTCAAGACTATCCTTCGTGGACAAGACGATGAT
GTGAAGGCGTTGCATGGGAGGCTGCTAGGGCACCGTGATGAGATCGTTTT
GGATGAGATGTCAGGTATTTTCTTCGAGAACCTCCTTCTTGTTTGCAAGC
ACGAGCTTCACCCCGACGTGGATAAGCTCAAGGGTAGATACTCGAAGGCA
TGGACAACCATCTTGCATTATATCGAGGATGCAGGTTGGCAACTAACGGA
CCCTCCATTCAGAGTTATGGGATAG
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