prot_C-tenellus_contig797.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig797.2.1
Unique Nameprot_C-tenellus_contig797.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length165
Homology
[Close]
BLAST of mRNA_C-tenellus_contig797.2.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.160e-8
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   96 SGRVLSHGWAYLCADGAVFAWEQGMVASGGSGTGPS----CLCFDHPSMAGELAAVRAL 150
            +GRVLSHGWA++C D  V AWEQGMVA+   G        CL F+HP+M  ELA +  L
Sbjct:   20 TGRVLSHGWAFMCTDTGVLAWEQGMVAAERPGAAVRADQVCLRFEHPAMMHELALMAPL 78
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig797.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHH9_9PHAE7.160e-852.54Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig797contigC-tenellus_contig797:3071..5130 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig797.2.1mRNA_C-tenellus_contig797.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig797 3071..5221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig797.2.1 ID=prot_C-tenellus_contig797.2.1|Name=mRNA_C-tenellus_contig797.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=165bp
MSSTLDPGILQGSAFFPSFRRTGDPSTEKLHALGSSAKRFNGGGGGWARG
SGTGIRDDARMGLTNTLIQTDTHMVMRAGPVPGDAAAHASSANDVSGRVL
SHGWAYLCADGAVFAWEQGMVASGGSGTGPSCLCFDHPSMAGELAAVRAL
EAPVEAADLVAISDV
back to top