mRNA_C-tenellus_contig7968.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7968.1.1
Unique NamemRNA_C-tenellus_contig7968.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7968contigC-tenellus_contig7968:1400..2867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1119
Hectar predicted targeting categoryother localisation
Exons2
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.547129-UTR-C-tenellus_contig7968:1399..14711680790072.547129-UTR-C-tenellus_contig7968:1399..1471Choristocarpus tenellus KU2346UTRC-tenellus_contig7968 1400..1471 -
1680790072.574328-UTR-C-tenellus_contig7968:2660..28671680790072.574328-UTR-C-tenellus_contig7968:2660..2867Choristocarpus tenellus KU2346UTRC-tenellus_contig7968 2661..2867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.5561693-CDS-C-tenellus_contig7968:1471..16631680790072.5561693-CDS-C-tenellus_contig7968:1471..1663Choristocarpus tenellus KU2346CDSC-tenellus_contig7968 1472..1663 -
1680790072.5649486-CDS-C-tenellus_contig7968:2012..26601680790072.5649486-CDS-C-tenellus_contig7968:2012..2660Choristocarpus tenellus KU2346CDSC-tenellus_contig7968 2013..2660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7968.1.1prot_C-tenellus_contig7968.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7968 1472..2660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7968.1.1

>prot_C-tenellus_contig7968.1.1 ID=prot_C-tenellus_contig7968.1.1|Name=mRNA_C-tenellus_contig7968.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=280bp
MALSRDSLEGSPGSIGRLDESNPSSKDESLGSPRVVLFHQEHPSQGQSLR
SPSRPEPSSERVVRGTVAGGKISSPVLRTRGTFAPQVIERVRTAAAAAAV
ASKPATSLMGDEDHEHEARNARSTLGRTSPGIATPKADRRVRYRNNESAV
QSSVRRPKSRQKPLRDRERSRQLPSSGRQSARTTTAFNPIGDPILSSKWT
AGVSEVKIPSFVEGNKEVAGGRNATLGDKATEANILPSYTDNASTKGALC
IPYSKSTFCLRCCVAFKESLNVFLGFSVV*
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mRNA from alignment at C-tenellus_contig7968:1400..2867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7968.1.1 ID=mRNA_C-tenellus_contig7968.1.1|Name=mRNA_C-tenellus_contig7968.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1468bp|location=Sequence derived from alignment at C-tenellus_contig7968:1400..2867- (Choristocarpus tenellus KU2346)
GGTAAACGTGCTTCTCTTTAATTTGTCGATGATCTATTGATGTTTTTCCT
AGATTCCGTAGATTTGCTGTAATGGCAAGAGTTACGCCTGAATATTTCCG
CATTTCGGTGGATGTTGATACAAGTTTTGTACGCGGATTCTTTTTAAAGT
GTTGTAGCTTCTTGTGATGGTAGTAGTTGATATAAGGTCCTCTCATGGCC
GCAACAGATGGCGCTATCACGCGACTCTCTGGAGGGTTCGCCTGGATCAA
TTGGAAGGCTAGATGAGAGTAATCCCTCCAGCAAGGATGAGTCATTAGGA
TCGCCGAGGGTTGTCCTATTCCACCAAGAGCACCCCAGTCAAGGACAATC
TCTACGATCCCCTTCACGACCGGAACCCTCTTCGGAGAGGGTCGTTCGAG
GAACGGTAGCTGGGGGGAAAATTTCTTCACCAGTCCTCAGGACGAGGGGA
ACCTTTGCACCTCAAGTAATTGAGAGGGTGCGGACAGCGGCAGCCGCTGC
TGCGGTGGCATCAAAACCTGCAACTTCTCTCATGGGTGATGAAGACCATG
AACATGAAGCCAGAAACGCTAGATCTACTCTGGGAAGAACATCTCCTGGG
ATAGCAACTCCAAAAGCAGACCGCCGGGTCCGATACCGTAACAATGAGTC
CGCTGTTCAGTCTTCCGTCCGACGCCCGAAGTCCAGACAGAAACCACTAC
GTGACCGTGAACGCTCCAGGCAACTGCCGAGCAGTGGACGCCAGAGTGCA
CGAACAACGACTGCCTTTAACCCCATCGGTGACCCAATACTTTCTTCTAA
ATGGACTGCTGGCGTTTCGGAAGTGAAGATACCTTCTTTCGTCGAAGGCA
ACAAGGTGGGCACTGTGAAGGACATCGAGGAAGTGCAACCTTAAGTGCTG
AGGACAAACACACTAGTATTGTACTCTGTATATTTCCAGCCGTACTGCTT
TCGCTCCTCCCCCATGAGTCACTTGCTAGTGCTGCACTTTTTATTTACGT
TGACGAAAGTGCTGCATGTTGGAGGGACATGTCCTGTTTTGTCTCTGCAT
TCCATTTCTTCTGTTTGGACATATCCTGTTTTGTCTTTATAGGTATTTAC
ACTACCAGTGCCTGGCTAGATGTGACGTTAGGTCTTAGTCTGAGTCCGAA
GACATGCAGGGTGGCTTTGAATTGTTTGCTTTTTCTGTGCTGGCATTTCA
ACAGGAGGTTGCCGGTGGCAGAAACGCTACGTTGGGGGACAAGGCTACTG
AAGCAAATATACTTCCCAGCTACACTGACAATGCCAGCACCAAAGGTGCA
CTATGCATACCCTATAGCAAATCAACCTTCTGTCTCCGGTGTTGTGTTGC
ATTCAAGGAAAGTTTAAACGTTTTTCTGGGCTTTTCAGTTGTATGATACG
TTGAGTGCAAACATGCAGGACCAGAAAGTTGAAAAAGTCGTTTTTTGACA
TGTCCACATTTTGTCCTC
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Coding sequence (CDS) from alignment at C-tenellus_contig7968:1400..2867-

>mRNA_C-tenellus_contig7968.1.1 ID=mRNA_C-tenellus_contig7968.1.1|Name=mRNA_C-tenellus_contig7968.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=840bp|location=Sequence derived from alignment at C-tenellus_contig7968:1400..2867- (Choristocarpus tenellus KU2346)
ATGGCGCTATCACGCGACTCTCTGGAGGGTTCGCCTGGATCAATTGGAAG
GCTAGATGAGAGTAATCCCTCCAGCAAGGATGAGTCATTAGGATCGCCGA
GGGTTGTCCTATTCCACCAAGAGCACCCCAGTCAAGGACAATCTCTACGA
TCCCCTTCACGACCGGAACCCTCTTCGGAGAGGGTCGTTCGAGGAACGGT
AGCTGGGGGGAAAATTTCTTCACCAGTCCTCAGGACGAGGGGAACCTTTG
CACCTCAAGTAATTGAGAGGGTGCGGACAGCGGCAGCCGCTGCTGCGGTG
GCATCAAAACCTGCAACTTCTCTCATGGGTGATGAAGACCATGAACATGA
AGCCAGAAACGCTAGATCTACTCTGGGAAGAACATCTCCTGGGATAGCAA
CTCCAAAAGCAGACCGCCGGGTCCGATACCGTAACAATGAGTCCGCTGTT
CAGTCTTCCGTCCGACGCCCGAAGTCCAGACAGAAACCACTACGTGACCG
TGAACGCTCCAGGCAACTGCCGAGCAGTGGACGCCAGAGTGCACGAACAA
CGACTGCCTTTAACCCCATCGGTGACCCAATACTTTCTTCTAAATGGACT
GCTGGCGTTTCGGAAGTGAAGATACCTTCTTTCGTCGAAGGCAACAAGGA
GGTTGCCGGTGGCAGAAACGCTACGTTGGGGGACAAGGCTACTGAAGCAA
ATATACTTCCCAGCTACACTGACAATGCCAGCACCAAAGGTGCACTATGC
ATACCCTATAGCAAATCAACCTTCTGTCTCCGGTGTTGTGTTGCATTCAA
GGAAAGTTTAAACGTTTTTCTGGGCTTTTCAGTTGTATGA
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