mRNA_C-tenellus_contig7967.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7967.2.2
Unique NamemRNA_C-tenellus_contig7967.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7967.2.2 vs. uniprot
Match: A0A6H5K6S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.040e-13
Identity = 103/371 (27.76%), Postives = 153/371 (41.24%), Query Frame = 1 
Query:  181 RVSAATAVDRVSQSMRLEDSLDQTVLSAKELSASVVAMVCGTLSSSHHQRSGTPVPMMVNRGQKEYN-FKNLDEYLIKVRGELDRRGISSKMFQAQLLLDLQAEAHRFQGAPSTREPLSKEVRTKERGGVCPGAEESYTYCREAPSLLGIVWRLHESGLLPMSRLLEAEEALPPPN----LRTPED-------LLGNFSDTLVDEMKRLTLPPPWDGSRQVTRAHTHPFAESVPLADGSGGARVGQSSNDRK--LFTNIAKYLFDLGYGYCHVTGAPLALGRDGRSHPWGSRNISATESAGGAGLSREGMGEGGQEVLASIAARGVLDRLCCGGDLFSASCNGSSTVSDGDQSSMVARTVCLALLEAVDPI 1251
            R+ AA  V  V+    L+ +  Q    A++ +A+VVA++          R+ +   +     ++  N ++  D  L+ V+ +L R  +SS++FQ QLL  L+      +G P   E      R   RGG CP            P  L + WRLH+  LLP+SRLLEA E+LP P      R+ ED       L G+  + +V++M+ L                          A  SGG   G S       L + +A +LFDL Y             R+G S   G  + + T  A                 LAS AAR VLDRLCC   +F           +G +S +     CL++L A+ P+
Sbjct:    7 RLKAAEVVGNVNPCTILDSTCGQVAKVARDSAAAVVALM----------RNASNRELCRGSDEEATNLWEAFDAGLLAVQAQLARGSVSSQVFQTQLLSTLR------RGDPRRCEEKGTGRR---RGGECP------------PVPLALYWRLHKLALLPLSRLLEANESLPSPGDLGWHRSCEDQRMFFGGLHGDSLEAIVEDMRALA-------------------------ARSSGGKDRGDSRRGEAAALVSEVATHLFDLAY-------------REGPSRSGGPADGTNTTGA-----------------LASRAARTVLDRLCCDAKVFGM---------EGQESRLRG---CLSVLAAISPV 279
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BLAST of mRNA_C-tenellus_contig7967.2.2 vs. uniprot
Match: D8LII6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.830e-12
Identity = 102/376 (27.13%), Postives = 159/376 (42.29%), Query Frame = 1 
Query:  181 RVSAATAVDRVSQSMRLEDSLDQTVLSAKELSASVVAMVCGTLSSSHHQRSGTPVPMMVNRGQKEYN-FKNLDEYLIKVRGELDRRGISSKMFQAQLLLDLQAEAHRFQGAPSTREPLSKEVRT--KERGGVCPGAEESYTYCREAPSLLGIVWRLHESGLLPMSRLLEAEEALPPPNLRTPEDL------------LGNFS----DTLVDEMKRLTLPPPWDGSRQVTRAHTHPFAESVPLADGSGGARVGQSSNDRKLFTNIAKYLFDLGYGYCHVTGAPLALGRDGRSHPWGSRNISATESAGGAGLSREGMGEGGQEVLASIAARGVLDRLCCGGDLFSASCNGSSTVSDGDQSSMVARTVCLALLEAVDPI 1251
            R SAA  V  V+    L+ +  Q    A++ +A+VVA++          R+ T   +     ++  N ++  D  L+ V+ +L R  +SS++FQ QLL  L+             +PL  E R   + RGG CP            P  L + WRLH+  LLP+SRLLEA E+L      +PEDL             G F     + +V++M+ L      D                    + S  +R G+++    L + +A +LFDL Y             R+G S   G  +          G++  G        LAS AAR VLDRLCC   +F     G+++  +G +  +     CL++L A+ P+
Sbjct:   18 RHSAAGVVSNVNPCTILDSTCGQVAKVARDSAAAVVALM----------RNATNRELCRGSDEEATNLWEAFDAGLLAVQAQLARGSVSSQVFQTQLLSTLRRG-----------DPLRCEERGTGRRRGGECP------------PVPLALYWRLHKLALLPLSRLLEANESL-----LSPEDLGRHRSCEDQGRFFGGFHGDSLEAIVEDMRALAARSSGD--------------------EDSSDSRRGEAA---ALVSEVATHLFDLAY-------------REGPSRSGGPAD----------GINTIG-------ALASRAARTVLDRLCCDAKVF-----GANSRMEGQEWRLRG---CLSVLAAISPV 294
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7967.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6S2_9PHAE5.040e-1327.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LII6_ECTSI5.830e-1227.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7967contigC-tenellus_contig7967:1989..6233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2254
Hectar predicted targeting categoryother localisation
Exons3
Cds size1845
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.4662213-UTR-C-tenellus_contig7967:1988..20061680790072.4662213-UTR-C-tenellus_contig7967:1988..2006Choristocarpus tenellus KU2346UTRC-tenellus_contig7967 1989..2006 +
1680790072.51525-UTR-C-tenellus_contig7967:5842..62331680790072.51525-UTR-C-tenellus_contig7967:5842..6233Choristocarpus tenellus KU2346UTRC-tenellus_contig7967 5843..6233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.4812086-CDS-C-tenellus_contig7967:2006..21461680790072.4812086-CDS-C-tenellus_contig7967:2006..2146Choristocarpus tenellus KU2346CDSC-tenellus_contig7967 2007..2146 +
1680790072.4908917-CDS-C-tenellus_contig7967:2357..33501680790072.4908917-CDS-C-tenellus_contig7967:2357..3350Choristocarpus tenellus KU2346CDSC-tenellus_contig7967 2358..3350 +
1680790072.5052805-CDS-C-tenellus_contig7967:5130..58421680790072.5052805-CDS-C-tenellus_contig7967:5130..5842Choristocarpus tenellus KU2346CDSC-tenellus_contig7967 5131..5842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7967.2.2prot_C-tenellus_contig7967.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7967 2007..5842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7967.2.2

>prot_C-tenellus_contig7967.2.2 ID=prot_C-tenellus_contig7967.2.2|Name=mRNA_C-tenellus_contig7967.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=615bp
MIEFGAVARRASNYEGYRGPVLSGYSVRAGDLLRSKDSEGKSGRHDINSQ
LSILRVSAATAVDRVSQSMRLEDSLDQTVLSAKELSASVVAMVCGTLSSS
HHQRSGTPVPMMVNRGQKEYNFKNLDEYLIKVRGELDRRGISSKMFQAQL
LLDLQAEAHRFQGAPSTREPLSKEVRTKERGGVCPGAEESYTYCREAPSL
LGIVWRLHESGLLPMSRLLEAEEALPPPNLRTPEDLLGNFSDTLVDEMKR
LTLPPPWDGSRQVTRAHTHPFAESVPLADGSGGARVGQSSNDRKLFTNIA
KYLFDLGYGYCHVTGAPLALGRDGRSHPWGSRNISATESAGGAGLSREGM
GEGGQEVLASIAARGVLDRLCCGGDLFSASCNGSSTVSDGDQSSMVARTV
CLALLEAVDPIRHSSMGEDHPQDDALACSNDNGVNMTTKGIPPSSASNAG
RVSIDENTPSSSSLYSSSAANSTPAASTVETNQDAVQVVVPVSGGDGGSL
QGAPGNTASAKAGGATEVAGGGGDKRAAKQGVVGGNSGVWVCPSGRRSLG
GEELPDRAMQAFLARQLRILFESRGGGASGTMADGGGGGWSLSTSHDSFR
GEVCVLCCCFTVME*
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mRNA from alignment at C-tenellus_contig7967:1989..6233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7967.2.2 ID=mRNA_C-tenellus_contig7967.2.2|Name=mRNA_C-tenellus_contig7967.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4245bp|location=Sequence derived from alignment at C-tenellus_contig7967:1989..6233+ (Choristocarpus tenellus KU2346)
CTAGGAAGTAGTTCGTACATGATCGAGTTCGGAGCAGTTGCTCGCCGAGC
CAGCAATTATGAAGGCTACAGAGGACCTGTTCTTAGTGGGTACTCTGTTA
GGGCAGGCGATTTGCTTCGTTCAAAAGATAGCGAAGGCAAGAGTGGACGT
CACGACATGTGAGGAACATGGTGGCATGTCAAATCGCTGTACTATATCGA
GTTCCTGATCTGGCCCGTGCACTCGAGTTTTCTCTTGTTCGCAAATAAAA
ACTAGGCGTTCGTTTGTTATGTCGCTTGCCGTCTTCTACAGCTTACCTAT
CAGCCGATCTCTTACCACACGGTGCATCCTGTCTTGTGCTTCCTCACCAT
TCCCCTTCTTTCTTGCAAGAAATTCGCAGCTGTCGATCCTGCGTGTCTCT
GCTGCGACGGCTGTGGACCGTGTAAGCCAATCCATGCGCTTGGAAGATTC
CTTAGACCAGACTGTCTTATCTGCCAAAGAGCTGTCTGCCTCTGTAGTTG
CAATGGTCTGTGGCACACTTTCATCCTCCCACCATCAACGTAGTGGCACT
CCAGTGCCAATGATGGTAAACAGGGGGCAGAAGGAGTATAATTTCAAAAA
CCTTGACGAATACCTCATTAAAGTCCGCGGCGAGCTTGATCGGCGAGGAA
TCTCGTCTAAGATGTTTCAGGCGCAGCTACTCCTTGATTTGCAGGCAGAG
GCGCATCGCTTTCAGGGAGCACCCTCTACTAGGGAGCCTTTGTCGAAAGA
AGTGAGGACTAAAGAGAGAGGAGGGGTATGTCCTGGGGCTGAAGAGAGCT
ACACCTATTGTAGAGAAGCACCCTCCCTCCTGGGAATAGTCTGGCGGCTT
CACGAGTCAGGCCTGTTGCCCATGTCACGCCTGCTTGAAGCGGAAGAGGC
ATTGCCCCCGCCGAACCTGAGGACTCCAGAGGATCTCCTTGGAAATTTCT
CAGACACCCTTGTGGACGAGATGAAGAGATTGACTTTACCTCCTCCTTGG
GATGGCTCAAGACAAGTAACACGCGCACACACACATCCCTTTGCGGAATC
GGTCCCACTAGCAGACGGTTCTGGAGGGGCGAGGGTGGGGCAGTCTTCGA
ATGACCGCAAGTTATTCACCAACATAGCTAAATATCTCTTCGATCTGGGC
TACGGATATTGCCACGTGACTGGAGCTCCCCTTGCGCTGGGAAGGGATGG
GAGATCCCATCCCTGGGGGAGTCGCAACATCAGTGCGACGGAATCAGCGG
GTGGGGCAGGTCTTTCAAGAGAGGGGATGGGCGAGGGTGGACAGGAAGTG
TTGGCATCAATAGCGGCAAGGGGTGTGCTTGATAGACTATGCTGTGGTGG
GGACCTCTTCAGGTAAAAAACGTTGTTTTGACTGAAATAAGGAGTAGGGT
TATTTCTGATGCATAGGCTTACGCTGTTGATAGTATATTGTAGTATTTGA
TTCTGATATAGGTTAGGATCAGGGTGAAGTTCAATGAATTTCAACGCATG
GAATGGAAGGTGTGCATTTACTTTTTCTTCTTTCCTGCTAACCAAATATT
GGTATGGATTATATGGGGAGGGTACGGGCATAGTGACTACTGTTGATCGT
TGGTTTGCTGTGGGATGTGTGGGGCATTCAGATCAATGGGAGCAACGCAA
TTGATTGCAAAATGGAGGGGGGGAAACATTGTGACAGGGTGAACCATCCT
GTTGGCCCAATCTTACAGTTCTGATAAGAGTATTCTGTTGATGTGCCATT
ATGTATGCATGTATTTCTTTTCTATGCAGTGCTTCCAACCCTATCGATTT
CGGATTGACTCGAATGCTGAGGGAACAGATGTAGCAGGAGACACCTATCT
TTCTGCTTACAGGGCTGTATATACAATTTATACAAAAGCAGACGACACTG
GCGTTTTGAGTGACCCCTCAAGATCGAGTTGCTAGCTCTTGAAATCTGAC
AATGGATTTATGTGTTGAAAATCAAACCATTTTTCTTTTCTTTCAAACTG
GTATAAAAGTGTTCATTATATGGTCCAGGGGAACTTGTTTGTAGCGAATT
GGGTGTATTGGCACTATTTGGACGTACTTCATGTCTCTGCAAGGTCTGCA
GTACCGATAGACTCAGGTTTATGGTCAGGGTTGAGCGAGACGGGGGCTAC
AAGTCAGGGAGAGGCTGTGTGTGCTGCAATGGTGGCCTGTGAAATTGGTT
GAATGTACGCAGACCTGAATTATGACTTGTAGAGTGTTGATTAGTGAGGA
CTATGTGTGTCATAGTGTTGAATCGCTGTTGGGGAGAAGATTACCCTTTG
AGGGGATTTGCAGTGATTTTTTTTTTAAAGGTGCCAGCTGCGGTTGGATT
TCACTGTAGTTGTGGTACATGGTTGATCATTCTATAGCCTCCAGTAGGCG
TTCATATGTACTCAAATGGGTGTGTTGAAAATCAGTATTGATGGTAACAT
ACACATACACACACATATATTACATACATGTATTGGGGTTTGTTGCAGAA
TGTGTAGGCGAAGGAGATATCAAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAAAAAAAAAAAGGGAAAATAATATCTTCATCACAGAGTGATC
ACCTCAGCGAGGTGTGTGTTGGTGTACTGAATTGATGCGTTCGCCCCACA
GCACCATCAAGGGCCCAGAATTAGCTGAGCAGATGAGCAGGACCAGCGAA
AGGAAATGGGTCAAAGTATCTTGGGGGAGGGGTCGGTGTCCGTTTTTCAC
CCTTTTTTCGATTTTCACTTTTTTGGTATGATTTGGTCGCACGTGTCGGA
TTTGAAATGTCAGCAAAAAAAAGAGTTGTTTGACTGAAACGGACGCCCCC
TGACACACACACACACACACCCTAGATACTTTGACCCAATCAGTAGGCTT
AGTAAACATCTACCCCTTGGTCTATCCAACACACACACACACACAAACAC
ACTCGTGCATCGATTTCAGCACCATCGCAAACGCCATCCATCCCCTTGCA
GAAATCAACACTCTTGATTGAGTGCTGTACTGCTTCTTGTGTGCCACAGT
GAGTACCTTTCACCCCATCTCCAATTGTGGTTCTACCCCCCCCGCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCTCACCCCCCGCCATCAGTGCTTCAT
GTAACGGGAGCAGCACAGTGAGCGATGGAGATCAGAGCTCCATGGTTGCT
CGGACTGTCTGCCTAGCCTTGCTCGAGGCTGTTGACCCCATCCGTCATAG
CTCAATGGGTGAGGACCACCCGCAAGATGATGCCCTTGCTTGCAGCAACG
ACAATGGTGTCAACATGACAACCAAAGGTATACCTCCTTCCTCTGCATCC
AATGCTGGAAGAGTATCAATAGATGAGAACACGCCTTCCTCCTCTTCTTT
GTACTCCTCCTCAGCGGCGAACAGCACCCCGGCAGCCTCCACAGTCGAAA
CAAATCAGGATGCGGTTCAGGTTGTGGTTCCAGTTTCAGGGGGCGATGGC
GGCAGTCTCCAAGGTGCTCCTGGGAATACTGCAAGTGCGAAAGCAGGAGG
GGCGACAGAGGTAGCTGGGGGAGGAGGGGATAAGAGAGCTGCTAAACAGG
GCGTTGTTGGAGGAAATTCAGGCGTTTGGGTTTGTCCCAGTGGAAGGAGA
AGCTTGGGGGGTGAGGAGCTGCCAGACAGGGCGATGCAGGCGTTCTTAGC
TCGGCAGTTACGAATTTTGTTTGAGAGCAGGGGCGGGGGGGCATCGGGTA
CCATGGCTGATGGGGGGGGAGGAGGATGGAGTTTGAGTACAAGTCATGAC
TCTTTTAGAGGTGAGGTTTGTGTTTTATGTTGCTGCTTCACTGTAATGGA
ATGAAGCAATGAATGGAGGGCCTTCTGGCAGTGCTGTAGTTAGTTGGCTT
GGCATTGTGCGTTTCAAGTGCTCTAAAGGCGGTGTCGAAATGATGTGGAC
AGTGGATGAGGGGAAGAGCGTGGGTCGGTTTTGGTTTAGATTTTATGCAA
AGTGTATGTTTACCTGCAGACGGGTTAGGGCGTCTCATACTGTCCGGTTT
TCAGCGTGGCATGTCATTCTGGTCGCTCTACAGTAGGTCAAACCAGAGAT
TTGATGTGATGCAATGCGATGCAATGCGATGTGATGTGATGCAATGTGAT
GCGATGCGATGTGATGTGATGTGATGTGATGTGATGCAATGTAATGTGCA
CCGTGAATACGGAAGTGAGAGCTGAGGTAACACCCTAACTCTCTC
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Coding sequence (CDS) from alignment at C-tenellus_contig7967:1989..6233+

>mRNA_C-tenellus_contig7967.2.2 ID=mRNA_C-tenellus_contig7967.2.2|Name=mRNA_C-tenellus_contig7967.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1845bp|location=Sequence derived from alignment at C-tenellus_contig7967:1989..6233+ (Choristocarpus tenellus KU2346)
ATGATCGAGTTCGGAGCAGTTGCTCGCCGAGCCAGCAATTATGAAGGCTA
CAGAGGACCTGTTCTTAGTGGGTACTCTGTTAGGGCAGGCGATTTGCTTC
GTTCAAAAGATAGCGAAGGCAAGAGTGGACGTCACGACATAAATTCGCAG
CTGTCGATCCTGCGTGTCTCTGCTGCGACGGCTGTGGACCGTGTAAGCCA
ATCCATGCGCTTGGAAGATTCCTTAGACCAGACTGTCTTATCTGCCAAAG
AGCTGTCTGCCTCTGTAGTTGCAATGGTCTGTGGCACACTTTCATCCTCC
CACCATCAACGTAGTGGCACTCCAGTGCCAATGATGGTAAACAGGGGGCA
GAAGGAGTATAATTTCAAAAACCTTGACGAATACCTCATTAAAGTCCGCG
GCGAGCTTGATCGGCGAGGAATCTCGTCTAAGATGTTTCAGGCGCAGCTA
CTCCTTGATTTGCAGGCAGAGGCGCATCGCTTTCAGGGAGCACCCTCTAC
TAGGGAGCCTTTGTCGAAAGAAGTGAGGACTAAAGAGAGAGGAGGGGTAT
GTCCTGGGGCTGAAGAGAGCTACACCTATTGTAGAGAAGCACCCTCCCTC
CTGGGAATAGTCTGGCGGCTTCACGAGTCAGGCCTGTTGCCCATGTCACG
CCTGCTTGAAGCGGAAGAGGCATTGCCCCCGCCGAACCTGAGGACTCCAG
AGGATCTCCTTGGAAATTTCTCAGACACCCTTGTGGACGAGATGAAGAGA
TTGACTTTACCTCCTCCTTGGGATGGCTCAAGACAAGTAACACGCGCACA
CACACATCCCTTTGCGGAATCGGTCCCACTAGCAGACGGTTCTGGAGGGG
CGAGGGTGGGGCAGTCTTCGAATGACCGCAAGTTATTCACCAACATAGCT
AAATATCTCTTCGATCTGGGCTACGGATATTGCCACGTGACTGGAGCTCC
CCTTGCGCTGGGAAGGGATGGGAGATCCCATCCCTGGGGGAGTCGCAACA
TCAGTGCGACGGAATCAGCGGGTGGGGCAGGTCTTTCAAGAGAGGGGATG
GGCGAGGGTGGACAGGAAGTGTTGGCATCAATAGCGGCAAGGGGTGTGCT
TGATAGACTATGCTGTGGTGGGGACCTCTTCAGTGCTTCATGTAACGGGA
GCAGCACAGTGAGCGATGGAGATCAGAGCTCCATGGTTGCTCGGACTGTC
TGCCTAGCCTTGCTCGAGGCTGTTGACCCCATCCGTCATAGCTCAATGGG
TGAGGACCACCCGCAAGATGATGCCCTTGCTTGCAGCAACGACAATGGTG
TCAACATGACAACCAAAGGTATACCTCCTTCCTCTGCATCCAATGCTGGA
AGAGTATCAATAGATGAGAACACGCCTTCCTCCTCTTCTTTGTACTCCTC
CTCAGCGGCGAACAGCACCCCGGCAGCCTCCACAGTCGAAACAAATCAGG
ATGCGGTTCAGGTTGTGGTTCCAGTTTCAGGGGGCGATGGCGGCAGTCTC
CAAGGTGCTCCTGGGAATACTGCAAGTGCGAAAGCAGGAGGGGCGACAGA
GGTAGCTGGGGGAGGAGGGGATAAGAGAGCTGCTAAACAGGGCGTTGTTG
GAGGAAATTCAGGCGTTTGGGTTTGTCCCAGTGGAAGGAGAAGCTTGGGG
GGTGAGGAGCTGCCAGACAGGGCGATGCAGGCGTTCTTAGCTCGGCAGTT
ACGAATTTTGTTTGAGAGCAGGGGCGGGGGGGCATCGGGTACCATGGCTG
ATGGGGGGGGAGGAGGATGGAGTTTGAGTACAAGTCATGACTCTTTTAGA
GGTGAGGTTTGTGTTTTATGTTGCTGCTTCACTGTAATGGAATGA
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