prot_C-tenellus_contig7923.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7923.1.1
Unique Nameprot_C-tenellus_contig7923.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length176
Homology
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BLAST of mRNA_C-tenellus_contig7923.1.1 vs. uniprot
Match: A0A7S4MWE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWE9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.500e-5
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:   10 SRSYEYSIRHLYGLEGKMKAFSPQSCRKIAQGWGNGEGGGAHGCPF 55
            ++ Y Y+IRHLYG EGK +A SP  C KI  G G G G   HGCP+
Sbjct:  312 TKEYSYTIRHLYGKEGKRQARSPYGCSKIIMGQGPGSGE-HHGCPY 356
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7923.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4MWE9_9STRA6.500e-554.35Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007238DNA primase large subunit, eukaryotic/archaealPFAMPF04104DNA_primase_lrgcoord: 12..158
e-value: 1.1E-11
score: 44.7
IPR007238DNA primase large subunit, eukaryotic/archaealPANTHERPTHR10537DNA PRIMASE LARGE SUBUNITcoord: 10..164
NoneNo IPR availablePANTHERPTHR10537:SF3DNA PRIMASE LARGE SUBUNITcoord: 10..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7923contigC-tenellus_contig7923:475..4455 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7923.1.1mRNA_C-tenellus_contig7923.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7923 216..4787 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7923.1.1 ID=prot_C-tenellus_contig7923.1.1|Name=mRNA_C-tenellus_contig7923.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=176bp
MGAEEYRQKSRSYEYSIRHLYGLEGKMKAFSPQSCRKIAQGWGNGEGGGA
HGCPFHSLPIMGTDASNGYFRGEFGSGSGVVEMGNGGLQQLLHRTGMGVG
DIEDIVGPLRAARVAGSVTKDSSSDEARAACRRHLMVVHRGKVGKAEMAE
VGASPNDWLMASVEAHSKLWMTQEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007238DNA_primase_lsu_euk/arc