mRNA_C-tenellus_contig789.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig789.1.2
Unique NamemRNA_C-tenellus_contig789.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig789.1.2 vs. uniprot
Match: D8LHL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL0_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.040e-20
Identity = 91/249 (36.55%), Postives = 114/249 (45.78%), Query Frame = 1 
Query: 1045 ESGRVGPGV----------EAELLSLGVHLFLVKVSGFSNSPEQVKSTKQQWVKNVLLKHLT---DDALKRTPVPRLDPNRFGWGDGSGGSGVSGFDDQNLAVQYEASLKSAHHRAFSRAAYLALRGGRSLCSGDLNTALK-CTEARHRVEITLLRRIKLDASRQREIVSGGGGDGGMVXXXSSAGDGLEGAGEEGEDNAVGVSKREWGRSEHGQEQD--SCNKEFTAIVSRYLRPVPGTRYYIYWKSE 1743
            +SGR GPG           E E  SLG+ LFLV+ SG    P + +S K + ++ +LL H+      A+   P  R+     GWGD  GG  V       LA  Y+  +   H RAF R  Y ALR GR LCSGDL  AL  C E    V IT LRR+ LD                                      A G  + +   +    E D  +C+ EFT+I+SRYLRPVPGT YYIYW+SE
Sbjct:  854 KSGRKGPGRGGACAGKGGNEDEDDSLGLFLFLVR-SGDFGLPIEPQSAKLRDIRRILLAHIPRSHHQAMAFKPARRI-----GWGDDPGGGRVG-----TLARSYQGLVNLEHRRAFLRVVYAALREGRMLCSGDLAFALSGCGETSREVNITRLRRVVLDNGT-----------------------------------AEGAPRADPADAAQQAEPDKAACDVEFTSILSRYLRPVPGTVYYIYWESE 1056
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig789.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHL0_ECTSI1.040e-2036.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig789contigC-tenellus_contig789:41..4363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2509
Hectar predicted targeting categoryother localisation
Exons5
Cds size2508
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.046984-CDS-C-tenellus_contig789:40..2951680790067.046984-CDS-C-tenellus_contig789:40..295Choristocarpus tenellus KU2346CDSC-tenellus_contig789 41..295 +
1680790067.0588093-CDS-C-tenellus_contig789:646..16381680790067.0588093-CDS-C-tenellus_contig789:646..1638Choristocarpus tenellus KU2346CDSC-tenellus_contig789 647..1638 +
1680790067.0705285-CDS-C-tenellus_contig789:1863..23071680790067.0705285-CDS-C-tenellus_contig789:1863..2307Choristocarpus tenellus KU2346CDSC-tenellus_contig789 1864..2307 +
1680790067.0809526-CDS-C-tenellus_contig789:2974..30411680790067.0809526-CDS-C-tenellus_contig789:2974..3041Choristocarpus tenellus KU2346CDSC-tenellus_contig789 2975..3041 +
1680790067.090021-CDS-C-tenellus_contig789:3612..43621680790067.090021-CDS-C-tenellus_contig789:3612..4362Choristocarpus tenellus KU2346CDSC-tenellus_contig789 3613..4362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig789.1.2prot_C-tenellus_contig789.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig789 41..4362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig789.1.2

>prot_C-tenellus_contig789.1.2 ID=prot_C-tenellus_contig789.1.2|Name=mRNA_C-tenellus_contig789.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=836bp
TKHVLHTDENSLGPPSGVGPAGQGSTGQGSEEKESELCPTCGVHRVVCIE
GEEDGQVDGRSDGQQGSEGTTFGLKEGELEPANNQLYRMLEQALQAYNQV
EIDWGFDVLDQPSPSQSPVLGKAQRQKRVPLHTGRRPHKASKASSVQPGL
GGRRISGSLHTHPQTSSRMQSFPGIFGKLPAKLVRGGRWYGRALGDDTVL
VTFLPSLHAWEEDMTTRTATRTMPSYNSSVDASGRGKFGGRGKSSAWDSR
RRVWCSRDDMEATLGEGDGVAQAGVGGVKGVGAGGGLGNKNFLPRRKTEE
NLCRAALGSGSTSGVNSITRQGSWGSVLGRGGNGSWSALTSLRPGGVLES
GRVGPGVEAELLSLGVHLFLVKVSGFSNSPEQVKSTKQQWVKNVLLKHLT
DDALKRTPVPRLDPNRFGWGDGSGGSGVSGFDDQNLAVQYEASLKSAHHR
AFSRAAYLALRGGRSLCSGDLNTALKCTEARHRVEITLLRRIKLDASRQR
EIVSGGGGDGGMVGGGSSAGDGLEGAGEEGEDNAVGVSKREWGRSEHGQE
QDSCNKEFTAIVSRYLRPVPGTRYYIYWKSEAALDQEIEIDAPPSEAEES
GDDFEREEDEDEGIGTQLGQGEGIGAGSLYLQHLPSRESRGKLSWGMPGT
EATFGESVAAAIRAGERSGVGAGSGVRGGGGGGGVGSSRVSSPGVRGSVR
QRDGVPLGQLSLPAVSPPPPLFVRFECLHTSEGGGQRRYAVDNQHTLGQA
LLADAPTVIESWHLEPSPWGRGGPSPTKGRTFLCIITTEFPSAVRGPTGG
TAVGLGVGGGSGPGNFMGCGLASPRDVSTHMLWGEG
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mRNA from alignment at C-tenellus_contig789:41..4363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig789.1.2 ID=mRNA_C-tenellus_contig789.1.2|Name=mRNA_C-tenellus_contig789.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4323bp|location=Sequence derived from alignment at C-tenellus_contig789:41..4363+ (Choristocarpus tenellus KU2346)
ACAAAGCATGTGCTACATACAGATGAAAACTCGTTGGGGCCTCCGAGTGG
TGTGGGACCTGCTGGGCAAGGATCCACCGGGCAAGGATCTGAGGAAAAGG
AATCCGAACTTTGCCCAACGTGTGGTGTGCATAGGGTGGTGTGCATAGAA
GGGGAGGAGGATGGTCAAGTGGATGGAAGGAGTGATGGACAGCAGGGTTC
CGAAGGAACCACATTTGGTTTGAAGGAGGGAGAGCTGGAGCCGGCCAATA
ATCAGGCATGTTCTACATGGTGCATGTTACGGCAACAAATAGTATTGCCC
TCAGAATTGATTACCTTCCTCAGTGTCAATGATTGCTTGACTGCTTGGCT
GTGTGACTACCTGTCAACCTCCTACTCTCAAGTCCGTGTCCAGAAGCTCC
TCATACCATACAGGTTGCTTACAATTGGGGCAGGTGTCAGTGTACATGTT
GTGTCCATTTAGTGTCATTGTGATATATTTTCACCTCCCCTTTGTCGATG
TTACTTTGATATTCCTTTTGTAGGAGTGTGTGTCATACAGCATGCCATTC
TCAACCTCCCCTCCCCTGCAACACATACCTATTCTTCTTTCATCTCTGTG
CTGCAGTTGTATAGGATGCTGGAACAGGCACTCCAAGCATACAACCAAGT
TGAGATAGATTGGGGGTTTGATGTCCTTGATCAGCCGTCACCGAGCCAAT
CACCTGTATTGGGCAAGGCTCAAAGGCAGAAACGTGTTCCTCTTCATACC
GGCCGTCGACCCCACAAAGCCTCCAAGGCATCCAGTGTCCAACCAGGTCT
TGGTGGTCGCCGCATCTCAGGCTCCCTGCACACACACCCTCAAACCTCTT
CAAGAATGCAGTCATTTCCCGGCATCTTCGGCAAGCTCCCGGCAAAGCTA
GTAAGGGGGGGGCGCTGGTATGGTCGAGCTCTGGGTGATGATACTGTGCT
GGTAACCTTTCTGCCGTCCCTCCATGCTTGGGAAGAGGACATGACTACTC
GCACTGCAACCAGAACAATGCCCAGCTATAACAGCAGTGTGGATGCTAGT
GGCAGGGGCAAATTTGGGGGAAGGGGGAAGAGTTCTGCTTGGGATTCAAG
GCGGCGAGTCTGGTGCTCACGGGATGATATGGAGGCAACTTTGGGGGAGG
GGGATGGAGTGGCACAAGCTGGGGTTGGAGGAGTTAAAGGAGTGGGTGCA
GGGGGAGGATTAGGCAATAAAAATTTCCTACCCCGGCGAAAGACTGAGGA
GAACCTTTGCCGTGCTGCACTGGGCTCAGGCTCTACCTCGGGAGTCAACT
CCATAACCAGGCAAGGATCGTGGGGTAGTGTGCTGGGGAGAGGTGGAAAT
GGGTCATGGTCAGCCTTGACTAGCTTGAGACCTGGTGGTGTACTTGAGAG
TGGAAGAGTAGGGCCAGGGGTGGAAGCAGAGCTGCTGTCATTGGGGGTGC
ACCTGTTCCTTGTGAAAGTGTCTGGCTTCAGCAACTCACCAGAGCAAGTC
AAGAGTACCAAGCAGCAATGGGTGAAAAATGTGTTGCTCAAGCACCTCAC
TGATGATGCGTTGAAGAGGACCCCAGTCCCTCGACTGGACCCAAACAGGT
GTGTTGTGTGTGTATACTTACTTTTTCAAGAGATGGTATGTTGTACTTCT
GTCAGGTTCACCTCTCGACTCCGCCAGCAAACATGGTCCTCAGTCTTGCC
TCCAGCCTTTGCGGACATTGACACCACCTCTTCTCTTGCCCAGCTAGCTC
ACTTCCCTTCATACCCTTTTTTCTCCCCTCCCCCCTCATCACCATGCTGT
CCACTGTACAAATAAATATGAAGATTTGGCTGGGGTGATGGCAGTGGTGG
CAGTGGCGTTAGTGGCTTTGATGATCAAAACCTAGCTGTACAGTATGAAG
CTTCGTTGAAATCTGCCCACCATAGGGCCTTTTCACGTGCCGCATACCTA
GCGCTGAGAGGAGGTAGGAGTTTATGCTCAGGAGACCTCAACACCGCCCT
TAAGTGCACAGAGGCTCGCCACCGGGTGGAGATAACCTTACTCAGGAGGA
TCAAACTTGATGCCAGCCGACAGAGAGAAATTGTGTCAGGAGGAGGGGGT
GATGGAGGCATGGTTGGTGGTGGTTCTTCAGCAGGTGACGGTTTGGAGGG
GGCTGGGGAGGAAGGTGAAGACAATGCAGTTGGGGTCAGCAAGAGAGAAT
GGGGGCGATCTGAGCATGGGCAGGAGCAGGACTCATGCAACAAAGAGTTT
ACTGCAATTGTGTCAAGGTAGTTGTCGCCAGGGTGTGGAAAGTTGTAGTT
TGGGGCTAGCTTTGGTAGCTTTTTCTTGTTTATCTATGAAGTCTCTCCCC
CGTGCAGTATTTCCTAAGCCGTCACTTCCTTTTTCATCTTTCTCATGTGA
TGTGTTCTAATATCATGGCTCCAAAGGCAACTCTTGAACCACTCACAAGT
GTAGGGCAAGGTGTAGGGTTGGGTTCCGCACTCTCTAACCCAAATACTAA
TTGTTGTCTCTTGGCTAAGACAACGGCAAATTCTACTTTGGCGTATGTTG
GGGGGTTCAATGCTTCATCCACAGAATGTTGCTTCCCACTTGTATGCACA
CTCACTTATTTTTGGGATGTTCAACTAGCAGCGGAAGAACAACTCTCCCC
TCTCTTCACCTTTTCCACTGCTCTACTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTTCTTTTTTCTTTTTTTTTTCTTTTTTTTTTTCTGCACATTTTT
GCCACAGCAGCACTGTATCATGAGTCCTTTCCTCTTGACCCATCAATCTG
GGCACACACTATTTTTGAGGCACACCCCCCACCTTTCAGAACAAGTACAG
GGCTACTCTCGTTGGAACACAATTGGTCTTGCAAATGCAAGTAGAATTTT
TTGGCCAAACATGAATGCTCACCCCCCATCACAGATATCTGAGGCCGGTT
CCTGGAACTCGATATTACATATATTGGAAGAGTGAGGCCGCTCTGGACCA
GGTCTGTCTGTTTCCCTCCCTCGTGTTACTCTTGTCTTGTCCTCTTCTTG
CCTCTCCCTGTTGCTCCTGTTATAATTCTGTTGGCTAGGGTCTGATACCA
TAAAGAACAATGTATACCGACCCCCATTTGTCCCTTCCCCCCCAGATCCT
ATTAACTTACTTCAATCATTGACTGGTGGAGAGGGTTAAGGAGCATGTTT
GCTGGGAGCATTAGATTCAATTGCCAAACCCGATAAAATACTTTTTTCTT
AGAAACGCTCTCCCTATTGCCAGCGCCAGAGTCGAAGTCTCAACTATGCA
GAGTCGTTCTATGGTTTGCTTCATTGGCACACGTACTTGAAGTTCATGAC
GTAAACTGATGTACAGCTCATCACTCTTGTATTTACTCGCATGCAAACAG
AATTACTTATCAACTGGGTCGATGCTGTCCTCTGGCTGAGGACATATACT
GACCCCAGCTGATAAATGTGTTGGTATATGTCTCCATCAAACCCCTGCTC
CTTCCCCTTCCCATCACCTAGTCAAAATCATCACCCTCTCCCATACTACC
CCATCCCCCTTTCCCCAACCAGGAAATAGAGATTGATGCACCCCCGAGTG
AGGCAGAGGAATCGGGGGATGATTTTGAGAGGGAAGAGGACGAGGACGAG
GGCATTGGGACACAGCTTGGCCAGGGAGAGGGTATTGGCGCTGGTTCCCT
CTACTTACAACACCTCCCCAGTAGGGAATCGCGAGGAAAGCTATCCTGGG
GAATGCCAGGGACAGAAGCCACCTTCGGTGAATCTGTAGCGGCCGCGATC
CGAGCAGGGGAACGCAGTGGAGTTGGTGCCGGCTCAGGGGTCAGAGGTGG
AGGTGGAGGTGGAGGGGTGGGATCATCTCGTGTTTCTTCCCCAGGGGTTA
GGGGCAGTGTAAGGCAGAGGGATGGTGTTCCGTTGGGACAGCTCTCCCTG
CCAGCGGTATCTCCACCACCTCCGCTCTTTGTGCGCTTTGAGTGCCTCCA
CACAAGTGAGGGAGGAGGGCAGAGGCGATATGCAGTGGACAATCAGCACA
CCCTGGGGCAGGCTCTGCTTGCAGATGCCCCAACAGTGATTGAATCCTGG
CATCTAGAGCCCTCCCCATGGGGAAGGGGAGGGCCTTCCCCAACCAAGGG
GCGCACGTTCCTCTGCATCATCACCACAGAGTTCCCGTCAGCGGTAAGGG
GTCCCACTGGTGGGACGGCTGTAGGCTTGGGTGTTGGAGGTGGCAGTGGC
CCTGGCAACTTTATGGGATGTGGCTTGGCATCCCCGAGGGATGTTAGTAC
ACATATGCTCTGGGGGGAAGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig789:41..4363+

>mRNA_C-tenellus_contig789.1.2 ID=mRNA_C-tenellus_contig789.1.2|Name=mRNA_C-tenellus_contig789.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=2508bp|location=Sequence derived from alignment at C-tenellus_contig789:41..4363+ (Choristocarpus tenellus KU2346)
ACAAAGCATGTGCTACATACAGATGAAAACTCGTTGGGGCCTCCGAGTGG
TGTGGGACCTGCTGGGCAAGGATCCACCGGGCAAGGATCTGAGGAAAAGG
AATCCGAACTTTGCCCAACGTGTGGTGTGCATAGGGTGGTGTGCATAGAA
GGGGAGGAGGATGGTCAAGTGGATGGAAGGAGTGATGGACAGCAGGGTTC
CGAAGGAACCACATTTGGTTTGAAGGAGGGAGAGCTGGAGCCGGCCAATA
ATCAGTTGTATAGGATGCTGGAACAGGCACTCCAAGCATACAACCAAGTT
GAGATAGATTGGGGGTTTGATGTCCTTGATCAGCCGTCACCGAGCCAATC
ACCTGTATTGGGCAAGGCTCAAAGGCAGAAACGTGTTCCTCTTCATACCG
GCCGTCGACCCCACAAAGCCTCCAAGGCATCCAGTGTCCAACCAGGTCTT
GGTGGTCGCCGCATCTCAGGCTCCCTGCACACACACCCTCAAACCTCTTC
AAGAATGCAGTCATTTCCCGGCATCTTCGGCAAGCTCCCGGCAAAGCTAG
TAAGGGGGGGGCGCTGGTATGGTCGAGCTCTGGGTGATGATACTGTGCTG
GTAACCTTTCTGCCGTCCCTCCATGCTTGGGAAGAGGACATGACTACTCG
CACTGCAACCAGAACAATGCCCAGCTATAACAGCAGTGTGGATGCTAGTG
GCAGGGGCAAATTTGGGGGAAGGGGGAAGAGTTCTGCTTGGGATTCAAGG
CGGCGAGTCTGGTGCTCACGGGATGATATGGAGGCAACTTTGGGGGAGGG
GGATGGAGTGGCACAAGCTGGGGTTGGAGGAGTTAAAGGAGTGGGTGCAG
GGGGAGGATTAGGCAATAAAAATTTCCTACCCCGGCGAAAGACTGAGGAG
AACCTTTGCCGTGCTGCACTGGGCTCAGGCTCTACCTCGGGAGTCAACTC
CATAACCAGGCAAGGATCGTGGGGTAGTGTGCTGGGGAGAGGTGGAAATG
GGTCATGGTCAGCCTTGACTAGCTTGAGACCTGGTGGTGTACTTGAGAGT
GGAAGAGTAGGGCCAGGGGTGGAAGCAGAGCTGCTGTCATTGGGGGTGCA
CCTGTTCCTTGTGAAAGTGTCTGGCTTCAGCAACTCACCAGAGCAAGTCA
AGAGTACCAAGCAGCAATGGGTGAAAAATGTGTTGCTCAAGCACCTCACT
GATGATGCGTTGAAGAGGACCCCAGTCCCTCGACTGGACCCAAACAGATT
TGGCTGGGGTGATGGCAGTGGTGGCAGTGGCGTTAGTGGCTTTGATGATC
AAAACCTAGCTGTACAGTATGAAGCTTCGTTGAAATCTGCCCACCATAGG
GCCTTTTCACGTGCCGCATACCTAGCGCTGAGAGGAGGTAGGAGTTTATG
CTCAGGAGACCTCAACACCGCCCTTAAGTGCACAGAGGCTCGCCACCGGG
TGGAGATAACCTTACTCAGGAGGATCAAACTTGATGCCAGCCGACAGAGA
GAAATTGTGTCAGGAGGAGGGGGTGATGGAGGCATGGTTGGTGGTGGTTC
TTCAGCAGGTGACGGTTTGGAGGGGGCTGGGGAGGAAGGTGAAGACAATG
CAGTTGGGGTCAGCAAGAGAGAATGGGGGCGATCTGAGCATGGGCAGGAG
CAGGACTCATGCAACAAAGAGTTTACTGCAATTGTGTCAAGATATCTGAG
GCCGGTTCCTGGAACTCGATATTACATATATTGGAAGAGTGAGGCCGCTC
TGGACCAGGAAATAGAGATTGATGCACCCCCGAGTGAGGCAGAGGAATCG
GGGGATGATTTTGAGAGGGAAGAGGACGAGGACGAGGGCATTGGGACACA
GCTTGGCCAGGGAGAGGGTATTGGCGCTGGTTCCCTCTACTTACAACACC
TCCCCAGTAGGGAATCGCGAGGAAAGCTATCCTGGGGAATGCCAGGGACA
GAAGCCACCTTCGGTGAATCTGTAGCGGCCGCGATCCGAGCAGGGGAACG
CAGTGGAGTTGGTGCCGGCTCAGGGGTCAGAGGTGGAGGTGGAGGTGGAG
GGGTGGGATCATCTCGTGTTTCTTCCCCAGGGGTTAGGGGCAGTGTAAGG
CAGAGGGATGGTGTTCCGTTGGGACAGCTCTCCCTGCCAGCGGTATCTCC
ACCACCTCCGCTCTTTGTGCGCTTTGAGTGCCTCCACACAAGTGAGGGAG
GAGGGCAGAGGCGATATGCAGTGGACAATCAGCACACCCTGGGGCAGGCT
CTGCTTGCAGATGCCCCAACAGTGATTGAATCCTGGCATCTAGAGCCCTC
CCCATGGGGAAGGGGAGGGCCTTCCCCAACCAAGGGGCGCACGTTCCTCT
GCATCATCACCACAGAGTTCCCGTCAGCGGTAAGGGGTCCCACTGGTGGG
ACGGCTGTAGGCTTGGGTGTTGGAGGTGGCAGTGGCCCTGGCAACTTTAT
GGGATGTGGCTTGGCATCCCCGAGGGATGTTAGTACACATATGCTCTGGG
GGGAAGGA
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