mRNA_C-tenellus_contig7878.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7878.2.1
Unique NamemRNA_C-tenellus_contig7878.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5JKV2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.070e-11
Identity = 24/48 (50.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y+++EG ++++ +PI+ F +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct:   57 LYEDHEGAIQIAIHPISNFNSKHIDVRHHFLRQLVDEKEVEIIHVASK 104
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BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5K0P8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.130e-11
Identity = 25/48 (52.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +YK+NEG ++++ +PI+   +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct: 1233 LYKDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASK 1280
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BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-10
Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG ++++ +PI+   +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct:  310 LYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQ 357
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-10
Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG ++++ +PI+   +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct:  362 LYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQ 409
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG ++++ +PI+   +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct:  543 LYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQ 590
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG ++++ +PI+   +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct:  296 LYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQ 343
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5KFD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.780e-10
Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG ++++ +PI+   +KHIDVRHHFL+QLV +K +E++HV S+
Sbjct:  383 LYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASK 430
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5JFL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.780e-10
Identity = 23/48 (47.92%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG ++++ +PI+   +KHID RHHFL+QLV +K +E++HV S+
Sbjct:   57 LYEDNEGAIQIAKHPISNSNSKHIDARHHFLRQLVDEKEVEIIHVASK 104
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5KL18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL18_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG +++  +PI+   +KHIDVRHHFL+QLV +K +EV+HV S+
Sbjct:  638 LYEDNEGAIQIEKHPISNSNSKHIDVRHHFLRQLVDEKEVEVIHVASK 685
[Close]
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSE 144
            +Y++NEG +K++ +PI+   +KHI+VRHHFL+QLV +K +E++HV S+
Sbjct:  833 LYEDNEGTIKIAKHPISNSNSKHIEVRHHFLRQLVDEKEVEIIHVASK 880
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7878.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV2_9PHAE1.070e-1150.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P8_9PHAE5.130e-1152.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWK8_9PHAE1.260e-1050.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRZ9_9PHAE1.300e-1050.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE1.310e-1050.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE1.310e-1050.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFD2_9PHAE1.780e-1050.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFL1_9PHAE1.780e-1047.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL18_9PHAE1.790e-1052.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKT4_9PHAE1.790e-1050.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7878contigC-tenellus_contig7878:4755..4904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size150
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue7.29e-08
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size150
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790065.9200885-CDS-C-tenellus_contig7878:4754..49041680790065.9200885-CDS-C-tenellus_contig7878:4754..4904Choristocarpus tenellus KU2346CDSC-tenellus_contig7878 4755..4904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7878.2.1prot_C-tenellus_contig7878.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7878 4755..4904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7878.2.1

>prot_C-tenellus_contig7878.2.1 ID=prot_C-tenellus_contig7878.2.1|Name=mRNA_C-tenellus_contig7878.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=50bp
MYKNNEGVVKLSGNPINGFRTKHIDVRHHFLKQLVSDKIIEVVHVVSEE*
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mRNA from alignment at C-tenellus_contig7878:4755..4904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7878.2.1 ID=mRNA_C-tenellus_contig7878.2.1|Name=mRNA_C-tenellus_contig7878.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=150bp|location=Sequence derived from alignment at C-tenellus_contig7878:4755..4904+ (Choristocarpus tenellus KU2346)
ATGTACAAGAACAATGAGGGGGTAGTGAAGCTATCGGGAAACCCAATCAA
TGGGTTTAGGACAAAGCATATTGACGTACGCCACCATTTCCTTAAGCAGT
TGGTTAGTGACAAGATTATAGAGGTTGTACATGTGGTATCAGAGGAGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7878:4755..4904+

>mRNA_C-tenellus_contig7878.2.1 ID=mRNA_C-tenellus_contig7878.2.1|Name=mRNA_C-tenellus_contig7878.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=150bp|location=Sequence derived from alignment at C-tenellus_contig7878:4755..4904+ (Choristocarpus tenellus KU2346)
ATGTACAAGAACAATGAGGGGGTAGTGAAGCTATCGGGAAACCCAATCAA
TGGGTTTAGGACAAAGCATATTGACGTACGCCACCATTTCCTTAAGCAGT
TGGTTAGTGACAAGATTATAGAGGTTGTACATGTGGTATCAGAGGAGTAA
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