mRNA_C-tenellus_contig7860.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7860.2.2
Unique NamemRNA_C-tenellus_contig7860.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Match: D8LC02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC02_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.190e-21
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 3 
Query:  666 IDNSLIIGGVAAVGGLLLGAGLVAFTENQGKRTVERGGLSDNMQNKFSAQFMEDDVLEEVKDVDDVRERMRQALRKNQSEEEAEAMTKAAVEKAKEAADDGW 971
            ++  +I GG+ AV GL +GAG+VA TE  G R+ ERG LS   + K  A FMEDDV+EE  DVDDVR  MR+ALR NQ+EEE  A+T  A ++A+E ADDGW
Sbjct:    2 VEQDIIYGGLVAVAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEET-DVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 102
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BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Match: A0A836CFV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.880e-17
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  642 TSVGLQMEIDNSLIIGGVAAVGGLLLGAGLVAFTENQGKRTVERGGLSDNMQNKFSAQFMEDDVLEEVKDVDDVRERMRQALRKNQSEEE-AEAMTKAAVEKAKEAADDGW 971
            +S  + ME+D + IIG  A VGGL LG GLVAFTE QG +T ERG + + M NK  A+ +ED  LEE  DV  V +RMR AL+++++EEE AE   K    ++KE  DDGW
Sbjct:   50 SSTAIAMEMDQNTIIGIAAGVGGLALGIGLVAFTEQQGVKTAERG-IDEGMANKLQAKLLEDFELEE-NDVTSVTDRMRAALKQDKTEEELAELAAKQLAARSKEREDDGW 158
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BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Match: A0A6S9FQI8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FQI8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.460e-11
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 3 
Query:  621 VALPFGKTSVGLQMEIDNSLIIGGVAAVGGLLLGAGLVAFTENQGKRTVERGGLSDNMQNKFSAQFMEDDVLEEVKDVDDVRERMRQALRKNQSEE-EAEAMTKAAVEKAKEAADDGW 971
            VA P  ++S      +D ++I+G    VGG   G GL+AFTE QG+RT ERGGLS++M  + +   +ED  ++ V D+  +  ++  AL++  S++ +   MT+   +K  + ADDGW
Sbjct:   40 VASPTQRSSSTSLCMVDQNVIMGTAIGVGGFAFGIGLIAFTEAQGERTKERGGLSESMSTRIAGALLEDVEVDSVSDLGSLTSQLEAALKETGSKDLDNLEMTEEEKQKMIDDADDGW 157
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BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Match: K0TE04_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TE04_THAOC)

HSP 1 Score: 71.2 bits (173), Expect = 1.240e-10
Identity = 41/104 (39.42%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:  666 IDNSLIIGGVAAVGGLLLGAGLVAFTENQGKRTVERGG-LSDNMQNKFSAQFMEDDVLEEVKDVDDVRERMRQALRKNQ-SEEEAEAMTKAAVEKAKEAADDGW 971
            +D ++I+GG  AVGG++ G GLVAF EN G+R+ ERGG LSD+M  + +   MED  ++ V D+  + +++  AL ++  +E+E   +++   ++  E ADDGW
Sbjct:   53 VDTNIILGGGIAVGGVVAGIGLVAFAENMGERSKERGGGLSDDMATRITGGLMEDVEVDSVGDLSSLTDKLEAALMESGGAEQEQLQLSEEDKKRIAEEADDGW 156
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BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Match: A0A7S1TQH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQH8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.130e-9
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 3 
Query:  666 IDNSLIIGGVAAVGGLLLGAGLVAFTENQGKRTVERGGLSDNMQNKFSAQFMEDDVLEEVKDVDDVRERMRQALRKNQSEEEAEAMTKAAVEKAKEAADDGW 971
            +DNS++IGG   +G  + G GL+AFTE QG+RT +RGGLS  M ++ SA+ +ED   +E  ++  + ERM  ALR   ++ +    T     K  E  DDGW
Sbjct:   37 MDNSILIGGTVLLG-TIAGVGLIAFTEQQGERTSQRGGLSGEMTDRLSAKLLEDYESDESGEISQLTERMEAALR---AQGDGTLETDGKEVKV-EVEDDGW 133
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BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Match: A0A7S1TPT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPT4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.940e-6
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:  666 IDNSLIIGGVAAVGGLLLGAGLVAFTENQGKRTVERGGLSDNMQNKFSAQFME 824
            +DNS++IGG   +G  + G GL+AFTE QG+RT +RGGLS  M ++ SA+ +E
Sbjct:   37 MDNSILIGGTVLLG-TIAGVGLIAFTEQQGERTSQRGGLSGEMTDRLSAKLLE 88
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7860.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LC02_ECTSI1.190e-2155.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFV7_9STRA1.880e-1750.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9FQI8_9STRA1.460e-1136.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0TE04_THAOC1.240e-1039.42Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1TQH8_9STRA1.130e-941.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TPT4_9STRA3.940e-650.94Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7860contigC-tenellus_contig7860:1132..5959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC02
Model size3156
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons3
Evalue1.18e-24
EggNOG OGs2E97Y@1|root,2SFM6@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_003940.1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790065.190455-UTR-C-tenellus_contig7860:1131..33131680790065.190455-UTR-C-tenellus_contig7860:1131..3313Choristocarpus tenellus KU2346UTRC-tenellus_contig7860 1132..3313 -
1680790065.2558537-UTR-C-tenellus_contig7860:5498..59591680790065.2558537-UTR-C-tenellus_contig7860:5498..5959Choristocarpus tenellus KU2346UTRC-tenellus_contig7860 5499..5959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790065.212431-CDS-C-tenellus_contig7860:3313..33881680790065.212431-CDS-C-tenellus_contig7860:3313..3388Choristocarpus tenellus KU2346CDSC-tenellus_contig7860 3314..3388 -
1680790065.228134-CDS-C-tenellus_contig7860:4477..45851680790065.228134-CDS-C-tenellus_contig7860:4477..4585Choristocarpus tenellus KU2346CDSC-tenellus_contig7860 4478..4585 -
1680790065.2405996-CDS-C-tenellus_contig7860:5168..54981680790065.2405996-CDS-C-tenellus_contig7860:5168..5498Choristocarpus tenellus KU2346CDSC-tenellus_contig7860 5169..5498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7860.2.2prot_C-tenellus_contig7860.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7860 3314..5498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7860.2.2

>prot_C-tenellus_contig7860.2.2 ID=prot_C-tenellus_contig7860.2.2|Name=mRNA_C-tenellus_contig7860.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=171bp
MRYSGVFIAAIAAAFLPCISAFFPGLPLHSRAAARPARTVRSPWADRTTG
ATTVALPFGKTSVGLQMEIDNSLIIGGVAAVGGLLLGAGLVAFTENQGKR
TVERGGLSDNMQNKFSAQFMEDDVLEEVKDVDDVRERMRQALRKNQSEEE
AEAMTKAAVEKAKEAADDGW*
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mRNA from alignment at C-tenellus_contig7860:1132..5959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7860.2.2 ID=mRNA_C-tenellus_contig7860.2.2|Name=mRNA_C-tenellus_contig7860.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4828bp|location=Sequence derived from alignment at C-tenellus_contig7860:1132..5959- (Choristocarpus tenellus KU2346)
GTGTGATGTTGTGAATACATCAACCTTTACACCCTAACAACTAGCACGGT
GCTGAAAAGGTGCGACCATACTGGTTATACCTTACCGAATTTTAACTTTC
TTTCAAACTTGGTGTCAAGTTTCTATTGCTGTTATAAGTTCTTTCAATTT
TGACACATTCCATGTATACTTTTAGACGAAGGACTATTCATCTTGGTTTG
GTGGTGTGAGACTACAACCAGCCTCTCTTCCCAGGCGGCTCTTTTACATG
CATTCGTTGGTCTTAATTCTATTTCGCTGCTCAGTGTAGATGATTTTCGT
GAGCTGCAGGTGCAGCATTGCTGGAGTTGTTTGAATTTGCTCTTTGTCGA
GGGTGAGGATGCCTCCTTTGGTCCAAACACAACCCTCTCAAATTTATCTT
CCAGGACCTTCGGGCGTAGGACATAAACAACCTTCCTGGACCGCTTGACG
ACAGAATCATCATGCGATACTCTGGCGTCTTCATAGCGGCAATCGCCGCA
GCTTTTCTTCCTTGCATCTCTGCTTTCTTCCCTGGTTTGCCTCTCCACAG
CAGGGCAGCAGCACGTCCTGCCCGGACAGTGAGATCACCCTGGGCAGACA
GAACTACAGGTGCCACTACCGTGGCTTTGCCTTTCGGGAAAACATCCGTA
GGTCTGCAGATGGAAATAGATAACTCGTTGATTATTGGTGGCGTGGCAGC
AGTGGGAGGCTTGCTTCTTGGTGCTGGACTGGTAGCATTCACCGAGAACC
AGGGAAAACGCACTGTAGAGCGCGGGGGACTCTCAGATAATGTAAGCGCT
CTTGTCTTCCACCAAGTAAAAGAATTGATTTCTTGAAGTACAGTGGTGAG
GTCAGCGGGGTCTTGAATGCAAGACATCTTTGTTTCAGGTTGGGCACGAT
CCGTGTTTCGGTTATTAAGCTACGAAGCAGCCCCTGCACCACACACCCTG
ATTTACATATACATATATATATATATATATATATATATATATATATATAT
ATTCCTTCATGGGCTATTGCTGGGCGATGCACTTGAAATGAAAGGCTCAG
TAAGGGAATGAGGTCAAGATTTGTGTCCTGTGGAAGTGAAGTGGACGACA
ATGTGTTGGAAGCTTCCTCAATACCATGTGAAAACACCTTGAGCTCGTCA
AGGAGTGTTGTCTTGTACCTTTGTAGTACATAAGAAAAATCTGGTTATTC
TCCTCATCCATCCCCACTCTCGTATTCGCGTCAACTTCAACTTCACCAAC
CCCACAACTGACAACCTTACATGGTAGCAAATTCATCCATAAACCATCTG
TTGCCTATATCCTACTCTGGACCTGGGCAACACCATCTTAATGGGCCCTT
TCTTTTTTTATTACCCCTTGACAGATGCAAAATAAGTTTTCTGCCCAATT
TATGGAGGATGATGTACTTGAGGAGGTCAAAGATGTTGATGATGTTCGTG
AGCGCATGCGTCAGGCCCTGCGCAAGAATCAGGTGATAAGAAAAAAGGCC
GCAGATGGCTGGTTCTCCAACTGTGTTTTGCTGTGTGGTGCAGGTGCTGT
GAATTGCTCCAAATATGTCATGGAATGTTATTGAAGAGTAGGATGGTTTG
GGTCTATTTGTATCTCGGTTTACCCAAGGACTAGGACGCCGAATAGGGTA
CCATGACGTTTTGCTTCAAAAATAGGCCAGATAACTGTGTCTGTTTAACC
TGGAGGGGTTTTCCATGCACTGCTACTTATATGTGGAATTTTTCTTTTTA
TAGAAACAGATTTTTATGGTGAATTCATAGTTGAGGTTATCCCTGATGTG
CGCTCATTGTGCTGTTAGTTGAGTTCCTCCTGGCTCAATTTCACTTTGGA
TGTCTGTTCATCTATTGGTAAGTGTTTTACAGAGTCCCCTCAAACTTGAG
GTATGAGGAGATATACATGTTTAATGTCTTCCATCAAACCAGGGCAGTAG
TAGTGTTATTGTTTGTCTCTGGTTACAACATGCCTGCTATGACACTAGCG
GTACACTGAAATAGGGTCAGATGCTATATGGAAAGTTGTGTGTTCTTGGT
GGAGATTGGATACGCCTGGGTTCTTGTCTGAAAAACCTCAGCGATTGAAT
TGTCAATACACAGTATTGCAAGTAAGTGTACTGTGTCTGTAGTTGCTTAA
GATTTCTCAAGCCGAGTAAACCTGTCCCATCAAGGTGTGTCACAAGACCT
GGTGAGAAGTGCTTGTTTAGTCCTATGTTCGAGTACACAAGAAAGACCCT
GACAAGTTGAAATCTAGGACCACAAGTGTTTGAACGCACAGTAGGTCAAA
ACAGAAGTGTGGAGGGGGGCAAGATTGGGGCAAGGTGAGCAGTGGTACTA
TTTTACTTTGTACTGGGCCTGCAAGATGGAAGAATGTAGTCATTCTTGTC
CAAACTCAGTTAGAACCTGGAAGAAATAGTTGAAGGAAGATGGTGTGGGT
GCTGAGCTTTGGTGTGTCACTTGCTCTTTCATCCATGTTACATAGTCAAG
AGTTCTTGATCGCTGCAGTCCATCTCATACATCCCCTTCAATATGTGTGT
TTTGCTTGTGTTGGTAATTAGTCGGAGGAGGAAGCCGAGGCTATGACAAA
GGCAGCTGTGGAAAAGGCCAAGGAGGCAGCAGATGATGGTTGGTAGGCTT
GAACTGAAGAGAGGACGCACCACACATGAGCAGTATTTGAGATAAGAATA
TCGGCATGAATAGGCAAAGCAAAAATGAGGTTTGGTCAATAGAGCTGGTG
CTGTTTTTTTTTCAGGTGTGTATGTGTGTGTGTGCGCGCGCGCGCGTGCG
TGCGGGTGTGTGCAAGTCAGCTGCTCTTTTTTTGTTTGGGGAAAAATGTG
AAACTGAGGACTAATCTTGTCAATAGGAGCTGTGTCCCTCTAGTGAGTTA
CTATGCATGGCTCAAGGAGGAGTGGGGAGAGAGTTGTACAAGTGTGTATT
GAAAGTTTTTTAGTAGTGAAGGGGATTCCACTTGCCGTTAAATTTCTAGT
GGCACCATGATCGTTGAACAATGATGTATGCTAATGGAGGTTGTCCTGGT
TGTTGGAGTAGGCTACTATATGACACAAACATGAGCAATGATATTCTATG
AAGCTCCCAGCCCACACTATACTTTTCCCTGTTGACATGTTTTTGCCAAG
AATGTGAGCGATACCATCAAAGAGGAGGGTGGTGTTGATTGTTAAGGGCC
CTATTACTGTCTTGTGGTACACATGTTTTAAGAACTGTGGAGGGCACTTG
TTACTGACATTGTGTCCGTACTAATCTTCTCTACAGTCAAGCTCTCCTAA
GGGGGGGTTAAGCACATATTAGACATGGATTTGGTGTAAACTCTGGAGTA
CCATATAGTATTGCACATTTCTCAAGGTCTTGGAACTCAAAGGGTTGAAA
TGTACTTCCATCTTGGATTGTTTCACTTTGATTCAAAGTATCTCAGAGGG
TAGAGCCGCGTCCATTTGGGGTCCAAAAACCTATATTGCGATTTGATGTA
ATTCTGGCTATCATGTTTGTTAGGAAGTGTCAATATCCGTGTTCTGGACA
CACCTTTTCATAAGTTATGCATTTTACCTACTCCAAAGCATTTTGGAGCA
GGAAAAAAACCCATGGGAAGCCAAGCCCCAAAAGGACAAGCAGGGCAAAC
CTCGTACCCTCTAAGATACTTTCACTCTTTGTAGAGTAAAAAGCTGGGGT
TGGTGTGCACTGTTCACGGAGCAAATGACCCAAATTTAGGGGTAGGTAGA
AGGCACGACACAAAAATAACTTCTGAACAATCGAAGGCGTTTGTCATTTA
CCAATCTAACCTGTCATTCTTGGCTTGACTTGTCAGTGAAACATTGATAT
GTCTTACATGCATGCCACAGTTTGTAGTTGCATGGTTTCTTGATCAAATA
ACAAATAACAAAAAAAATAGGGGGGGGTGTGTGTGTTAGAAGATTGGAAG
ATGCCCACATGACCTACAGCTTATCTAGAACTGTGTAGTTCTTTGTACAC
TGATGTGTAGTGCAGCAAGGGTGATTATGCTGGTGTAGTGGAAGCACAAA
TGATCATCACTGTTCAAACAGGTACAGTGGTAGTGCTTAGTTTGCTACTT
TCCCCTGGTTTGCAACTCCAATCAACTCTGAAACTCCTGCCATGTTGGAA
AAGTGTAACATGAGCCCCATCTAATTTCGATATGGTAAAGGTTGTGTAGG
CAAAGGGAGATATGATGTCGCAATATCTAGTGTTGTGCTCATATTTTGTG
TACTAATTGCATATAACGGTATGACAGTTTTGTGTACGTTTTTGTAATTT
TCGGTAAAATACATAGTAGCATCATACATAGTGGTATGATGAGGGTTAGA
CTTCATTTGTGTGTCAGACAATGGCCAAGACAAAAGATCAATTAATTAAT
AATCAGTGTATGTTAAATGGTCGATGGTGGCTGACTGAAATACTTACCAC
TTTAGCAAGTGTATAGATGCACGCTCTTGTGAATGTTTGTGGAAATACTT
TTTAGATGGAGAGAGCGTATGTACTCTCCCCAAGAAAGTAAATGGCTGAG
TATGCAACAATAGAACCCATTTTAGTCAAATAAATAGGATATGTTGGTAC
AATAGCTGATGCAGAGTACCAGACGAATTTGCAAACATCAATAATCCGTT
CCTAGCACCTCAGGGTGGTGGTTTATGCACTTGATGAGGGTTTGTTGAAG
GTTTCTATTACTTTTTATTTACCAGTTGATACAACCTCAGCCAAAAACAC
CTCTCAACTTCATCGATATATTGGCACCATTAGCAGCAATGACATGGGCT
CCCTCCTGAATTCGATAAGGTGAAAGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7860:1132..5959-

>mRNA_C-tenellus_contig7860.2.2 ID=mRNA_C-tenellus_contig7860.2.2|Name=mRNA_C-tenellus_contig7860.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=513bp|location=Sequence derived from alignment at C-tenellus_contig7860:1132..5959- (Choristocarpus tenellus KU2346)
ATGCGATACTCTGGCGTCTTCATAGCGGCAATCGCCGCAGCTTTTCTTCC
TTGCATCTCTGCTTTCTTCCCTGGTTTGCCTCTCCACAGCAGGGCAGCAG
CACGTCCTGCCCGGACAGTGAGATCACCCTGGGCAGACAGAACTACAGGT
GCCACTACCGTGGCTTTGCCTTTCGGGAAAACATCCGTAGGTCTGCAGAT
GGAAATAGATAACTCGTTGATTATTGGTGGCGTGGCAGCAGTGGGAGGCT
TGCTTCTTGGTGCTGGACTGGTAGCATTCACCGAGAACCAGGGAAAACGC
ACTGTAGAGCGCGGGGGACTCTCAGATAATATGCAAAATAAGTTTTCTGC
CCAATTTATGGAGGATGATGTACTTGAGGAGGTCAAAGATGTTGATGATG
TTCGTGAGCGCATGCGTCAGGCCCTGCGCAAGAATCAGTCGGAGGAGGAA
GCCGAGGCTATGACAAAGGCAGCTGTGGAAAAGGCCAAGGAGGCAGCAGA
TGATGGTTGGTAG
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