mRNA_C-tenellus_contig7839.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7839.2.1
Unique NamemRNA_C-tenellus_contig7839.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7839.2.1 vs. uniprot
Match: D8LLH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.030e-24
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 3 
Query:   69 EFYREAVDNIDTERGLFLDKISLVQPSFEEEHRLEWERQCQEEELCTLKDQMETVSEEVEKEVQFMGERERVITEIRREQHEDRIKIQTLLALSQPITPDITILFESLG--GAPQPLCRSSR 428
            E Y+EA+  I+ ER   L+KI LVQPSFEE+H+LEW R+ QEEEL  L+ ++  VS EVE E + + +RE +I  IR EQ +DRIKIQTLLALSQPITPDIT++F++L     P PL   SR
Sbjct:    2 ECYQEAMRAIERERINVLNKIDLVQPSFEEQHQLEWGRRYQEEELLALRLEVGEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSR 123
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BLAST of mRNA_C-tenellus_contig7839.2.1 vs. uniprot
Match: A0A6H5K070_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K070_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-12
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 3 
Query:  168 LEWERQCQEEELCTLKDQMETVSEEVEKEVQFMGERERVITEIRREQHEDRIKIQTLLALSQPITPDITILFESLG--GAPQPLCRSSR 428
            L+W R+ QEEEL  L+ ++  VS EVE E++ + +RE +I  IR EQ +DRIKIQTLLALSQPITPDIT++F++L     P PL   SR
Sbjct:   13 LQWGRRYQEEELLALRLEVGEVSGEVEAEIKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSR 101
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BLAST of mRNA_C-tenellus_contig7839.2.1 vs. uniprot
Match: A0A835ZIT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.230e-7
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  117 FLDKISLVQPSFEEEHRLEWERQCQEEELCTLKDQMETVSEEVEKEVQFMGERERVITEIRREQHEDRIKIQTLLALSQPITPDITILFESLGGAPQP 410
            F  +I +VQPS EE HR+EW+ +  E EL     +  ++          +  R   I E+  EQ EDR ++Q LLAL QP++ D+T+LF+  G +  P
Sbjct:   46 FRKQIEMVQPSQEERHRIEWQLEALERELAVASGEAASLRASTGTAGAAIAARAAAIAELLAEQREDRTRVQRLLALCQPVSHDVTVLFDHFGASEGP 143
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BLAST of mRNA_C-tenellus_contig7839.2.1 vs. uniprot
Match: A0A7S2SHB0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SHB0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.310e-5
Identity = 33/110 (30.00%), Postives = 68/110 (61.82%), Query Frame = 3 
Query:   57 MAIKEFYREAVDNIDTERGLFLDKISLVQPSFEEEHRLEWERQCQEEELCTLKDQMETVS----EEVEKEVQFMGERERVITEIRREQHEDRIKIQTLLALSQPITPDIT 374
            + +  FYRE + N D ER   +D+++  + +  E HR++WE + ++EE+  L++ +   +    EE E+ ++ + E +    +++ +Q EDR +IQ LLAL++P++ ++T
Sbjct:   24 LGLLAFYREKIANFDKERQEIIDRVATTEVAHAELHRVKWELRVRQEEIAELQNALSDANVQLFEEREESLKLLAEND----QLKVQQVEDRRRIQHLLALTEPVSQEVT 129
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7839.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLH3_ECTSI2.030e-2456.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K070_9PHAE2.210e-1255.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZIT2_9STRA5.230e-736.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SHB0_9STRA2.310e-530.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7839contigC-tenellus_contig7839:1329..3826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000022270
Model size1510
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.58e-07
EggNOG OGs28KS5@1|root,2QT8A@2759|Eukaryota,1MG6J@121069|Pythiales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_004610.1
Description77. Source PGD
Cds size666
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790063.6695814-UTR-C-tenellus_contig7839:1328..21161680790063.6695814-UTR-C-tenellus_contig7839:1328..2116Choristocarpus tenellus KU2346UTRC-tenellus_contig7839 1329..2116 -
1680790063.8327637-UTR-C-tenellus_contig7839:3770..38261680790063.8327637-UTR-C-tenellus_contig7839:3770..3826Choristocarpus tenellus KU2346UTRC-tenellus_contig7839 3771..3826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790063.683203-CDS-C-tenellus_contig7839:2116..25241680790063.683203-CDS-C-tenellus_contig7839:2116..2524Choristocarpus tenellus KU2346CDSC-tenellus_contig7839 2117..2524 -
1680790063.699343-CDS-C-tenellus_contig7839:3185..33261680790063.699343-CDS-C-tenellus_contig7839:3185..3326Choristocarpus tenellus KU2346CDSC-tenellus_contig7839 3186..3326 -
1680790063.712333-CDS-C-tenellus_contig7839:3653..37701680790063.712333-CDS-C-tenellus_contig7839:3653..3770Choristocarpus tenellus KU2346CDSC-tenellus_contig7839 3654..3770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7839.2.1prot_C-tenellus_contig7839.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7839 2117..3770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7839.2.1

>prot_C-tenellus_contig7839.2.1 ID=prot_C-tenellus_contig7839.2.1|Name=mRNA_C-tenellus_contig7839.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=222bp
MAIKEFYREAVDNIDTERGLFLDKISLVQPSFEEEHRLEWERQCQEEELC
TLKDQMETVSEEVEKEVQFMGERERVITEIRREQHEDRIKIQTLLALSQP
ITPDITILFESLGGAPQPLCRSSRAVATATSPAIDETPITTSGLAPGSSC
EGQQGGVLEDPEGTDQSHVIQTDQDRSLVRRGPSGRSEGGNVGSEGGRRD
AQRCTRGYYEYLNRKVEMTQV*
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mRNA from alignment at C-tenellus_contig7839:1329..3826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7839.2.1 ID=mRNA_C-tenellus_contig7839.2.1|Name=mRNA_C-tenellus_contig7839.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2498bp|location=Sequence derived from alignment at C-tenellus_contig7839:1329..3826- (Choristocarpus tenellus KU2346)
CGATAGTCCCATAGCCCCATTGTTGGACCATCTACTGTTGTCCACGGAGG
GCTAAAATGGCCATCAAGGAGTTCTATCGTGAGGCTGTGGATAATATCGA
CACCGAACGTGGACTTTTCCTGGACAAGATCTCCCTTGTGCAGCCGTCTT
TCGAGGAAGAGCATCGACTCGAGGTTTGGCTTCACTCCCATTCCACTTTT
AAATTATACCTTGTATGCATGGGTGGACAACACAATTGACAGAATATTTT
CAGGATTGAGGCACACTCGTAAGATACCATTAAAATCCGGTAGTGATAAT
TGTCCAATCTCGTGTTTTTCAAGTATGCACCAACCAGACCCGTTAAACTT
TTTTGGTGCTACATCATGGTTCTAAACACCAAAGCACTTGCACGTTAGCA
CTTGCTGATTAAGGTGATTTTTATAACTTCCGCCCAATAAACTTCTCAGC
AAGGGATTCGTTTCTTTTGGGATCACGTTTTCGTATGTATATCGCTGCAG
TGGGAGAGACAATGCCAGGAGGAGGAGCTTTGCACCCTTAAAGACCAAAT
GGAGACAGTATCGGAAGAGGTGGAGAAGGAGGTTCAGTTCATGGGAGAGA
GAGAGAGGGTCATCACAGAAATACGTCGTGAACAGCATGAGGTAAGGAAA
GAAAGAAGGACCCCTTTTACTCCGTTCTTTGGGCAGTCATATATCTACAA
GTTGTCCCTTGATACGTATGTTGCATTGTCTAGCTTCTTTTTGTTGGATG
CTTCCTTTTTTTCCTTCTCTCTGTTTGTCTTTCCTTCCTGACCATGGACC
CGGGCATGTTTTAAGTTGCTTCTTTCCCCATGACAACATCTGCAAATTGT
TTAAGCACCAGTGCAACTTGCATCAAACTAGTGTGTGTTTATCAATCGAT
CGATTCAATCAAATGAATCATTTGAGACCACTGTGTTTGACTTAAGATCT
TTTTTTTTTTCCCGGCAATTTATCCAACTAGAATCTTGTGATGGTACTGT
GATATCCTTGTAACTGTTGCTACGTGTACAGTAGATTTTCAATCACAAGC
AGAAATCCAAAATCCAGGGGAAGAATTAGCCACCATTTTGAAGCCTGGAC
CTCCCTACAGACATCATTGTTGCCTACACCTTCAACGAGGTCAAATCCAT
CCACACCACAGCAACCCCGCCCCGCCCAAATATATGTTGAACATCGTAGA
ACAAATAGGCTTAAAGCTTATTACTTCCTGTGCGCACTCCATCAACCTCC
TTCCCCTCACGCTCCCTGTCTCTCCATTGTTGACACTAAAATCATTCTCC
AGGATCGCATCAAGATCCAGACTCTCCTCGCTCTGTCTCAGCCCATAACG
CCAGACATTACCATTCTCTTTGAGTCTCTTGGAGGTGCACCACAACCTCT
GTGTCGTAGCTCCAGGGCTGTAGCCACTGCCACCTCCCCGGCCATCGATG
AGACCCCCATTACCACCTCAGGTCTTGCACCTGGTTCTTCCTGCGAGGGT
CAACAGGGAGGTGTGCTGGAGGATCCTGAGGGAACTGACCAAAGCCATGT
AATACAGACTGACCAGGATAGAAGCTTGGTCAGAAGGGGACCCAGTGGCC
GATCTGAGGGTGGGAATGTGGGTTCAGAGGGTGGGCGTAGAGATGCCCAG
CGGTGTACTCGAGGGTACTATGAGTACCTTAACCGAAAGGTAGAGATGAC
ACAGGTATGAACACTGCTCCTCTCCCCCCTTTCCCCCCGGGGCCAAATCA
TGATGGATGTGTGTGTTTGTGTGTCTAAGAGAGGAGAAAGGTCTCACTCG
ATGTATATATTGTGTCTCACTGTATATATATTGTGTCCTTGCCTTGTACG
GTGTTGCCTGCCAATGGACATAATTTGCTTAATTTGCTTTTGAGAGAATT
TATCGCTCGACTTTGCTGCCGAATCATGCATCTTGAGATTTTGAGGCTCC
TGTGTACAGCTACTCCCTTGATTGTGTAGTGGTGTATCAACATCTCAACA
AATGTAGAGGCCCAAGTGTTCCCAACTTAATCCAGGGGATATTACCCCGT
TTGCCCTTGCCTACTCCCATGGCAGTTCACTCCATCTCGTGTTTCTCGTT
CAGTTGTCCATAGGAAAATCTCACTGCATCCTTTTTTCTCCTGATGAAGA
GAAAGTGACCAGTCATCCCAGGGTTTAAAGCCCACCACCTCCGATTTTGT
GTATGGATAAATATACCACTACACCAGAGAGCCAGCAGTATTCTTAGAAG
TAGCTGCCGAGATACTAGGTACCACTACATTGCTGATGCTCCTGTAGATA
CCTACTTACTCTTTAGTGTAGTAATTTTATCTCAGCGTCTTGACAAGGTC
GCAGGCCGTCTCCTGAACAAAATCAGATGCCTATTTTGGTTCACACCCTG
GTACGGCTGGTTGCTTTCTCGGCTCCCTTCATCGGTAGAAAAAATATTAT
TATTATTTATTTTTTTTTAAATGCATAATTCAATTAAAAATACTTTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig7839:1329..3826-

>mRNA_C-tenellus_contig7839.2.1 ID=mRNA_C-tenellus_contig7839.2.1|Name=mRNA_C-tenellus_contig7839.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=666bp|location=Sequence derived from alignment at C-tenellus_contig7839:1329..3826- (Choristocarpus tenellus KU2346)
ATGGCCATCAAGGAGTTCTATCGTGAGGCTGTGGATAATATCGACACCGA
ACGTGGACTTTTCCTGGACAAGATCTCCCTTGTGCAGCCGTCTTTCGAGG
AAGAGCATCGACTCGAGTGGGAGAGACAATGCCAGGAGGAGGAGCTTTGC
ACCCTTAAAGACCAAATGGAGACAGTATCGGAAGAGGTGGAGAAGGAGGT
TCAGTTCATGGGAGAGAGAGAGAGGGTCATCACAGAAATACGTCGTGAAC
AGCATGAGGATCGCATCAAGATCCAGACTCTCCTCGCTCTGTCTCAGCCC
ATAACGCCAGACATTACCATTCTCTTTGAGTCTCTTGGAGGTGCACCACA
ACCTCTGTGTCGTAGCTCCAGGGCTGTAGCCACTGCCACCTCCCCGGCCA
TCGATGAGACCCCCATTACCACCTCAGGTCTTGCACCTGGTTCTTCCTGC
GAGGGTCAACAGGGAGGTGTGCTGGAGGATCCTGAGGGAACTGACCAAAG
CCATGTAATACAGACTGACCAGGATAGAAGCTTGGTCAGAAGGGGACCCA
GTGGCCGATCTGAGGGTGGGAATGTGGGTTCAGAGGGTGGGCGTAGAGAT
GCCCAGCGGTGTACTCGAGGGTACTATGAGTACCTTAACCGAAAGGTAGA
GATGACACAGGTATGA
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