mRNA_C-tenellus_contig7822.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7822.3.1
Unique NamemRNA_C-tenellus_contig7822.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7822.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7822contigC-tenellus_contig7822:1385..2347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size849
Hectar predicted targeting categoryother localisation
Exons2
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.8059473-UTR-C-tenellus_contig7822:1384..16791680790062.8059473-UTR-C-tenellus_contig7822:1384..1679Choristocarpus tenellus KU2346UTRC-tenellus_contig7822 1385..1679 -
1680790062.8375037-UTR-C-tenellus_contig7822:2243..23471680790062.8375037-UTR-C-tenellus_contig7822:2243..2347Choristocarpus tenellus KU2346UTRC-tenellus_contig7822 2244..2347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.8174896-CDS-C-tenellus_contig7822:1679..19151680790062.8174896-CDS-C-tenellus_contig7822:1679..1915Choristocarpus tenellus KU2346CDSC-tenellus_contig7822 1680..1915 -
1680790062.8276057-CDS-C-tenellus_contig7822:2029..22431680790062.8276057-CDS-C-tenellus_contig7822:2029..2243Choristocarpus tenellus KU2346CDSC-tenellus_contig7822 2030..2243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7822.3.1prot_C-tenellus_contig7822.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7822 1680..2243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7822.3.1

>prot_C-tenellus_contig7822.3.1 ID=prot_C-tenellus_contig7822.3.1|Name=mRNA_C-tenellus_contig7822.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=150bp
MFTEIQVQYLYHEMCTVTVHGLLLSWSKNIKYLLLNYSLIELFCRISTDF
CWTQGLLFENRVLPIIALFVICTHVCKILPVLCALVLHYVHAGEGGYPMS
QCTDALGLILPAVLYGLLSVGWDVSLLMLLISRETLPTFWATTCPAFVT*
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mRNA from alignment at C-tenellus_contig7822:1385..2347-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7822.3.1 ID=mRNA_C-tenellus_contig7822.3.1|Name=mRNA_C-tenellus_contig7822.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=963bp|location=Sequence derived from alignment at C-tenellus_contig7822:1385..2347- (Choristocarpus tenellus KU2346)
TTTTGTGAGGTATGTTATAATTTTTTACTCTTTGGGCTATGAATTGATGT
GATTTGCCAGGAAGGTGCAGGTTTTCTCTTGTCCTGCTTTAATTGAACCT
TGTAATGTTCACAGAAATACAGGTACAGTACTTGTATCACGAAATGTGTA
CCGTCACCGTGCATGGTCTACTCCTTTCTTGGTCCAAGAACATCAAATAT
CTCTTATTGAACTATTCTCTTATTGAACTATTCTGCAGGATCTCGACAGA
TTTTTGCTGGACACAAGGCCTTTTATTTGAGAATAGAGTACTTCCTATTA
TAGCCCTATTCGTGATCTTGGTGAGAGATAGGATTAGGGTTAATGATCAC
ATTCACATTCACCTCAATTGTTAAGATATACACATAGTAAGTAGGAAAGG
CCGCCTAGCAGGATGAATCATTGTATCATGTTGTACGCACGTGTGTAAAA
TCCTGCCAGTTTTATGTGCACTGGTACTACACTATGTGCATGCAGGAGAA
GGCGGTTACCCTATGTCACAGTGTACTGATGCTCTTGGGCTGATCTTACC
AGCCGTTCTGTATGGACTCCTCTCTGTTGGGTGGGATGTATCCTTGCTCA
TGCTTTTGATATCTCGAGAAACTCTTCCTACATTTTGGGCTACTACTTGC
CCTGCCTTTGTGACCTGAAATTGAGGGCATACTTGTAGAAATAGTATTAC
CAGGCAAGACATTTTACGTACTGTTTTTCACCAACAAAATTGTGGCGAAA
GGTTGTATGCTCATAGTGATGTTTTGTGAGGGAGGGGGGCAAGGTAGAGT
GCCGTTAGCATTTTTTTGTGCAATCTCTAGATACGTGACTCTGGTTTATC
CCCAGTAAAACTGATGTCCCTGTCTGGATGGGTGGGTATGGTGCTTTGGA
GCTAATAGAAGCACTTCAGTGGTGGAGCCTATATCCCGTATGATCAATTT
GATGAAGAGGGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7822:1385..2347-

>mRNA_C-tenellus_contig7822.3.1 ID=mRNA_C-tenellus_contig7822.3.1|Name=mRNA_C-tenellus_contig7822.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=450bp|location=Sequence derived from alignment at C-tenellus_contig7822:1385..2347- (Choristocarpus tenellus KU2346)
ATGTTCACAGAAATACAGGTACAGTACTTGTATCACGAAATGTGTACCGT
CACCGTGCATGGTCTACTCCTTTCTTGGTCCAAGAACATCAAATATCTCT
TATTGAACTATTCTCTTATTGAACTATTCTGCAGGATCTCGACAGATTTT
TGCTGGACACAAGGCCTTTTATTTGAGAATAGAGTACTTCCTATTATAGC
CCTATTCGTGATCTGTACGCACGTGTGTAAAATCCTGCCAGTTTTATGTG
CACTGGTACTACACTATGTGCATGCAGGAGAAGGCGGTTACCCTATGTCA
CAGTGTACTGATGCTCTTGGGCTGATCTTACCAGCCGTTCTGTATGGACT
CCTCTCTGTTGGGTGGGATGTATCCTTGCTCATGCTTTTGATATCTCGAG
AAACTCTTCCTACATTTTGGGCTACTACTTGCCCTGCCTTTGTGACCTGA
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