mRNA_C-tenellus_contig781.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig781.1.1
Unique NamemRNA_C-tenellus_contig781.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: A0A6H5KG47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG47_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.930e-36
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMS-LSGKVAVRDVVQFVPFNDFQGRDSTSQHALAKHVLQEIPSQFLSFMKSKNILPSPRRRL-SPLTGAG 378
            GQKY VLCI+TDG I+D++ T  AIV+A+  PLSIV+VGVG  DFT M  LD D ++L S  +GKVA RD+VQFVPF DF G  S +QHALAKHVL EIP QF+S+M+S  I P+ +R   S +TG G
Sbjct:  468 GQKYHVLCIMTDGIINDMDATVSAIVDAADAPLSIVIVGVGQGDFTAMDHLDGDRQRLTSPFTGKVASRDMVQFVPFRDFNGFGSAAQHALAKHVLAEIPGQFISYMQSNGIDPANKRPPGSIVTGGG 595          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: A0A8J4YX13_9CHEL (Copine-8 n=2 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YX13_9CHEL)

HSP 1 Score: 129 bits (323), Expect = 2.100e-33
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDST----SQHALAKHVLQEIPSQFLSFMKSKNILPSP 345
            G +Y +L I+TDG I D+ +T++AIV ASSLPLSI++VGVGN DF  M +LD D+++L S +G++AVRD+VQFVPF  F   +S     SQ  LAK VL EIP Q +SFMKSKNI+P+P
Sbjct:  245 GSQYFILLILTDGIISDMAQTKEAIVNASSLPLSIIIVGVGNVDFEAMEELDGDDQRL-SYNGRLAVRDIVQFVPFRKFISSNSMNFQRSQALLAKEVLAEIPYQIISFMKSKNIVPNP 362          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: A0A2G8LHY6_STIJA (Putative copine-8 isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LHY6_STIJA)

HSP 1 Score: 129 bits (325), Expect = 4.180e-33
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDST--SQHALAKHVLQEIPSQFLSFMKSKNILPSPRR 351
            G +Y +L IITDG I D+ +T+  IV A+SLP+SI++VGVGN DFT M +LD D  +L S  GKVA RD+VQFVPF DF+  ++   SQ  LAK VL EIP QFLS+M+S  + P PRR
Sbjct:  331 GSEYFILLIITDGIITDMQKTKKEIVRAASLPMSIIIVGVGNEDFTAMEELDGDEVRL-SFQGKVAERDIVQFVPFRDFENANNAVISQAQLAKEVLAEIPDQFLSYMRSNGVKPRPRR 448          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: A0A8J4YUZ1_9CHEL (Copine-8 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YUZ1_9CHEL)

HSP 1 Score: 129 bits (323), Expect = 8.600e-33
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDST----SQHALAKHVLQEIPSQFLSFMKSKNILPSP 345
            G +Y +L I+TDG I D+ +T++AIV ASSLPLSI++VGVGN DF  M +LD D+++L S +G++AVRD+VQFVPF  F   +S     SQ  LAK VL EIP Q +SFMKSKNI+P+P
Sbjct:  342 GSQYFILLILTDGIISDMAQTKEAIVNASSLPLSIIIVGVGNVDFEAMEELDGDDQRL-SYNGRLAVRDIVQFVPFRKFISSNSMNFQRSQALLAKEVLAEIPYQIISFMKSKNIVPNP 459          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: UPI0018F4C624 (copine-6-like n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F4C624)

HSP 1 Score: 124 bits (310), Expect = 6.990e-32
Identity = 65/121 (53.72%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDSTSQHALAKHVLQEIPSQFLSFMKSKNILPSPRRRLSP 363
              KY +L I+TDG + DI ETRDAIVEAS LP+SI++VGVGN DFT MR LD D+  L+S   + A RD+VQFVPF DF+    T   ALAK VL E+P Q + F  S+ I P P++   P
Sbjct:  189 ASKYYILLILTDGVVTDIGETRDAIVEASHLPMSIIIVGVGNADFTDMRTLDGDDGILLSTRDRAAARDIVQFVPFRDFK---KTPASALAKCVLAEVPKQVVEFYASQGIGPEPKQSDGP 306          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: A0A161MJS2_TRIIF (Copine-8-like protein isoform x1 (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161MJS2_TRIIF)

HSP 1 Score: 119 bits (298), Expect = 7.510e-32
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDSTS-QHALAKHVLQEIPSQFLSFMKSKNILPSP 345
            G  Y +L I+TDG I D+ +T  AIV+ASSLPLSI++VG+GN DFT M  LD D   L S  G  A RD+VQFVPF+ +    + S +H LA+ VL EIP QF+S+MKS+NI+P P
Sbjct:   44 GSSYFILLILTDGVITDMPQTCQAIVKASSLPLSIIIVGIGNADFTAMEQLDGDTVALTS-GGMRAERDIVQFVPFSKYSSNATLSARHLLAREVLAEIPGQFVSYMKSRNIVPKP 158          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: R7UYG1_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UYG1_CAPTE)

HSP 1 Score: 127 bits (319), Expect = 7.620e-32
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRD----STSQHALAKHVLQEIPSQFLSFMKSKNILPSP 345
            G  Y VL I+TDG I D  +T+DAIV+ASSLP+SI++VGVGN DF  M +LD+DN +LMS  GK A RD+VQFVPF +F GR     + S+  LAK VL EIP Q + +MK + ILP P
Sbjct:  429 GSNYFVLLILTDGVITDFPQTKDAIVQASSLPVSIIIVGVGNADFDAMEELDADNHRLMS-HGKAAERDIVQFVPFREFLGRHGNDLAASEAHLAKEVLAEIPDQIVGYMKKRGILPKP 546          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: UPI001CB8702E (copine-7-like n=1 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB8702E)

HSP 1 Score: 118 bits (296), Expect = 1.350e-31
Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    4 QKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDSTSQHALAKHVLQEIPSQFLSFMKSKNILPSPRRR 354
            QKY +L I+TDG + DI+ETRDAIVEAS LP+SI++VGVGN DF+ MR LD ++  L+S  G+ A RD+V+FVPF +F+   ++   ALAK+VL E+P Q + F  S+ + P P ++
Sbjct:   11 QKYYMLLILTDGVVTDISETRDAIVEASCLPMSIIIVGVGNADFSDMRALDGEDGILLSSYGQEAARDIVKFVPFREFKKAPTS---ALAKYVLAEVPKQVVEFYASQGLPPEPHKQ 124          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: UPI001B7E425B (LOW QUALITY PROTEIN: copine-6-like n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E425B)

HSP 1 Score: 124 bits (312), Expect = 2.400e-31
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDSTSQHALAKHVLQEIPSQFLSFMKSKNILPSPRRR 354
              KY +L I+TDG + DI ETRDAIVEAS LP+S++VVGVGN DFT MR LDSD+  L+S  G+ A RD+VQFVPF DF+   ++   ALAK VL E+P Q + F  S+ + P P ++
Sbjct:  302 ASKYYILLILTDGVVTDIGETRDAIVEASRLPMSVIVVGVGNADFTDMRTLDSDDGILLSTHGQCAARDIVQFVPFRDFKKAPAS---ALAKCVLAEVPKQVVEFYASQGVGPEPHKQ 416          
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Match: UPI000B45C43F (copine-8-like isoform X1 n=4 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45C43F)

HSP 1 Score: 124 bits (312), Expect = 3.030e-31
Identity = 71/131 (54.20%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    1 GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRDLDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRD-----STSQHALAKHVLQEIPSQFLSFMKSKNILPSPRRRLSPLTGAG 378
            G  Y VL I+TDG I D+  T +AIV +S LPLSI++VGVGN +F  M  LD+DN+KL S  GK AVRD+VQFVPF DF G         SQ ALAK VL EIP QFL +MK+ NI P P +    + G G
Sbjct:  276 GNNYFVLLILTDGVITDLPNTIEAIVHSSGLPLSIIIVGVGNAEFDAMDVLDADNQKLSSR-GKQAVRDIVQFVPFRDFLGGKFGNNMQVSQAALAKEVLAEIPDQFLQYMKANNIKPKPPQENVRMPGQG 405          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG47_9PHAE1.930e-3659.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J4YX13_9CHEL2.100e-3357.14Copine-8 n=2 Tax=Nymphon striatum TaxID=424472 Rep... [more]
A0A2G8LHY6_STIJA4.180e-3356.30Putative copine-8 isoform X2 n=1 Tax=Stichopus jap... [more]
A0A8J4YUZ1_9CHEL8.600e-3357.14Copine-8 n=1 Tax=Nymphon striatum TaxID=424472 Rep... [more]
UPI0018F4C6246.990e-3253.72copine-6-like n=1 Tax=Scyliorhinus canicula TaxID=... [more]
A0A161MJS2_TRIIF7.510e-3254.31Copine-8-like protein isoform x1 (Fragment) n=1 Ta... [more]
R7UYG1_CAPTE7.620e-3256.30Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI001CB8702E1.350e-3151.28copine-7-like n=1 Tax=Chiloscyllium plagiosum TaxI... [more]
UPI001B7E425B2.400e-3154.24LOW QUALITY PROTEIN: copine-6-like n=1 Tax=Carchar... [more]
UPI000B45C43F3.030e-3154.20copine-8-like isoform X1 n=4 Tax=Mizuhopecten yess... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig781contigC-tenellus_contig781:232..1439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKI8
PFAMsC2,Copine,Dev_Cell_Death
Model size378
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Exons2
Evalue2.07e-37
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Descriptionnegative regulation of response to water deprivation
Cds size378
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.890466-CDS-C-tenellus_contig781:231..2851680790061.890466-CDS-C-tenellus_contig781:231..285Choristocarpus tenellus KU2346CDSC-tenellus_contig781 232..285 +
1680790061.9446635-CDS-C-tenellus_contig781:1115..14391680790061.9446635-CDS-C-tenellus_contig781:1115..1439Choristocarpus tenellus KU2346CDSC-tenellus_contig781 1116..1439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig781.1.1prot_C-tenellus_contig781.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig781 232..1439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig781.1.1

>prot_C-tenellus_contig781.1.1 ID=prot_C-tenellus_contig781.1.1|Name=mRNA_C-tenellus_contig781.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=126bp
GQKYCVLCIITDGRIHDINETRDAIVEASSLPLSIVVVGVGNHDFTPMRD
LDSDNEKLMSLSGKVAVRDVVQFVPFNDFQGRDSTSQHALAKHVLQEIPS
QFLSFMKSKNILPSPRRRLSPLTGAG
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mRNA from alignment at C-tenellus_contig781:232..1439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig781.1.1 ID=mRNA_C-tenellus_contig781.1.1|Name=mRNA_C-tenellus_contig781.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1208bp|location=Sequence derived from alignment at C-tenellus_contig781:232..1439+ (Choristocarpus tenellus KU2346)
GGGCAGAAGTACTGTGTGCTGTGTATCATCACAGATGGGAGAATTCATGA CATTGTGAGTTATCACAATTTTTGTTTGTAGTGTAGGGGTAATGATAGTA GTGGTTATAGTAACAATAATAAGAGTAATAGAAATAGTAAATAGCACGTA ATAGTTGAAAGTAATAGCAGCAAAGAGTGAAAGTATCTTATAAGGTACGA ATTTTGCCCTGCTTGTCCATTTGGGGCTTGGCTTCCCATGGGTTCGTTAT GACATTTTCCTACTCCAAAACCGTTTTGGAGTAGGTAAAATGTATACGTT GTGAAAAGGTGTATCCGGAACAAGGATATTGACACTTCCTAACAAACACG ATAGCCAAAATTACTTCAAAATCACAGCATTGGATTTTGGCCCCCAAATG GACGCAGCCCTACCCTCTAAGATACTTCGGCTCAAAAAGTAATCATATTG AAAAATTGGTTAGTGTTAGTGGTGGTGGTGGTAGTAATTTTTTTATAAAT ATTATAGTACCAAGATGGAGATATAGGGTTAGAATTAGAGTTTTTAGGTG AAAAGTGAGCAATAGGGGATATACGGTGTTGTAGGAAATCAAAGCACTTT CAAATAAGTTTCTTCCACTGTATCCCTTCCGTGCAGACTAAGCCAATATA GCAGTTTTTATGTTGGGACAGGGTGAGAGTACGGCAATACATAGAAACCA GTAACTGATTTATGACGGCATCAGTCGCACCAGTCAAAAAGCAAGAAACT GGTTCTGTGCTCAGTGTTGGAAAATGAAGTGATACCTTACATTTACTACT CACCTCTTTGGTTTGTTACCTGTTGCCTGTTGCCTATTGCCCTTTCTTTC CCCCCTGCACTCTTCTCCCCCCCATTCCAAAAAGAACGAGACCCGTGACG CCATTGTGGAGGCTTCCTCTCTCCCTCTCAGCATTGTGGTTGTGGGTGTA GGGAACCATGATTTTACACCCATGAGGGATCTTGACAGTGACAACGAGAA ACTCATGTCCCTCTCAGGCAAAGTAGCAGTACGGGACGTCGTGCAGTTTG TCCCCTTCAATGATTTTCAAGGGAGGGACTCCACCTCCCAGCATGCCCTT GCTAAGCATGTGCTTCAAGAGATACCCAGTCAGTTCCTGAGCTTTATGAA GAGCAAAAATATCCTCCCTTCTCCTAGGAGGAGATTATCTCCTCTTACGG GTGCCGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig781:232..1439+

>mRNA_C-tenellus_contig781.1.1 ID=mRNA_C-tenellus_contig781.1.1|Name=mRNA_C-tenellus_contig781.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=378bp|location=Sequence derived from alignment at C-tenellus_contig781:232..1439+ (Choristocarpus tenellus KU2346)
GGGCAGAAGTACTGTGTGCTGTGTATCATCACAGATGGGAGAATTCATGA
CATTAACGAGACCCGTGACGCCATTGTGGAGGCTTCCTCTCTCCCTCTCA
GCATTGTGGTTGTGGGTGTAGGGAACCATGATTTTACACCCATGAGGGAT
CTTGACAGTGACAACGAGAAACTCATGTCCCTCTCAGGCAAAGTAGCAGT
ACGGGACGTCGTGCAGTTTGTCCCCTTCAATGATTTTCAAGGGAGGGACT
CCACCTCCCAGCATGCCCTTGCTAAGCATGTGCTTCAAGAGATACCCAGT
CAGTTCCTGAGCTTTATGAAGAGCAAAAATATCCTCCCTTCTCCTAGGAG
GAGATTATCTCCTCTTACGGGTGCCGGT
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