mRNA_C-tenellus_contig7791.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7791.1.1
Unique NamemRNA_C-tenellus_contig7791.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7791.1.1 vs. uniprot
Match: D7FXB0_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.860e-25
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 LLLSASITGFACLFYIVGTYFDSEPW--VQAIEIVLAVAFFLDYVLSVVAAPVAMAYIISWEGFVDLLSIFPVFGAFRRWIYSLSFIRYLRVGKAIRATRHRRTL 309
            +L ++  T  +C+FYIVGTY  ++    V A E V A+ FF+DYVLSV A  V + Y++S+EG VDL SIFPVFGAF RW+YSLSF+RYLR+GK  R  R+ R L
Sbjct:    5 MLFTSITTLVSCVFYIVGTYTANQHHSIVIAGEAVFALVFFMDYVLSVTAEAVWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVTRVIRNHRML 109
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BLAST of mRNA_C-tenellus_contig7791.1.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.560e-23
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 LLLSASITGFACLFYIVGTY--FDSEPWVQAIEIVLAVAFFLDYVLSVVAAPVAMAYIISWEGFVDLLSIFPVFGAFRRWIYSLSFIRYLRVGKAIRATRHRRTL 309
            +L ++  T  +C+F+IVGTY     +  V A E V A+ FF+DYVLSV A  V + Y++S+EG VDL SIFPVFGAF  W+YSLSF+RYLR+GK  R  R+ RTL
Sbjct:   46 MLFTSITTLVSCVFFIVGTYTAHQYDYIVIAGEAVFALVFFVDYVLSVTAEAVRLTYVLSFEGIVDLCSIFPVFGAFYSWLYSLSFVRYLRLGKVTRVIRNHRTL 150
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BLAST of mRNA_C-tenellus_contig7791.1.1 vs. uniprot
Match: D8LEK1_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.530e-21
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   31 ACLFYIVGTYFDSEPWVQAIEIVLAVAFFLDYVLSVVAAPVAMAYIISWEGFVDLLSIFPVFGAFRRWIYSLSFIRYLRVGKAIRATRHRRTL 309
            +CLFYI+ TY     WV+ +E    + F +DY L+VVAAP+ +AY +   G +DL+S  P FG+F+ W+ SLSF+RYLRVGKAIR  R+ + L
Sbjct:   11 SCLFYILATYLHDRHWVRHVETGYGILFLVDYSLTVVAAPIPLAYALGKGGLIDLVSCLPAFGSFQPWMASLSFVRYLRVGKAIRVMRNHKLL 103
[Close]
BLAST of mRNA_C-tenellus_contig7791.1.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.720e-21
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 LLLSASITGFACLFYIVGTYFDSEPWVQAIEIVLAVAFFLDYVLSVVAAPVAMAYIISWEGFVDLLSIFPVFGAFRRWIYSLSFIRYLRVGKAIRATRHRRTL 309
            +LL +  T  +CLFYI+ TY    PWV  IE    + F +DY L+  AAPV +AY +   G +DL+S  P FG+F+ W+ SLSF+RYLRVGKAIR  R+ + L
Sbjct:   63 MLLLSLATLSSCLFYILATYVHDRPWVGHIETSFGILFLVDYSLTAAAAPVPLAYALGKGGLIDLVSCLPAFGSFQPWMASLSFVRYLRVGKAIRVMRNHKLL 165
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXB0_ECTSI6.860e-2555.24Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4I5_9PHAE2.560e-2354.29Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LEK1_ECTSI1.530e-2149.46Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQ48_9PHAE2.720e-2148.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7791contigC-tenellus_contig7791:294..1766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXB0
PFAMsBK_channel_a,Ion_trans,Ion_trans_2,TrkA_N
Model size309
Max annot lvl2759|Eukaryota
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.13e-25
EggNOG OGsKOG1420@1|root,KOG1420@2759|Eukaryota
Descriptionlarge conductance calcium-activated potassium channel activity
Cds size309
COG categoryP
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.6778457-CDS-C-tenellus_contig7791:293..3451680790058.6778457-CDS-C-tenellus_contig7791:293..345Choristocarpus tenellus KU2346CDSC-tenellus_contig7791 294..345 -
1680790058.6894512-CDS-C-tenellus_contig7791:715..8221680790058.6894512-CDS-C-tenellus_contig7791:715..822Choristocarpus tenellus KU2346CDSC-tenellus_contig7791 716..822 -
1680790058.7079005-CDS-C-tenellus_contig7791:1616..17661680790058.7079005-CDS-C-tenellus_contig7791:1616..1766Choristocarpus tenellus KU2346CDSC-tenellus_contig7791 1617..1766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7791.1.1prot_C-tenellus_contig7791.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7791 294..1766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7791.1.1

>prot_C-tenellus_contig7791.1.1 ID=prot_C-tenellus_contig7791.1.1|Name=mRNA_C-tenellus_contig7791.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
LLLSASITGFACLFYIVGTYFDSEPWVQAIEIVLAVAFFLDYVLSVVAAP
VAMAYIISWEGFVDLLSIFPVFGAFRRWIYSLSFIRYLRVGKAIRATRHR
RTL
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mRNA from alignment at C-tenellus_contig7791:294..1766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7791.1.1 ID=mRNA_C-tenellus_contig7791.1.1|Name=mRNA_C-tenellus_contig7791.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1473bp|location=Sequence derived from alignment at C-tenellus_contig7791:294..1766- (Choristocarpus tenellus KU2346)
CTACTTCTTTCTGCCAGCATTACAGGGTTCGCCTGCCTGTTTTATATCGT
CGGAACCTACTTCGACAGCGAGCCTTGGGTTCAGGCGATTGAGATCGTCC
TTGCTGTTGCATTTTTCTTGGACTACGTGCTCTCTGTTGTTGCCGCCCCT
GTGAGAATAACCGCACCCCCCAATAGCAGTAGCACTCTCATGATCTGCCT
TCTTAGATAGCCCCGGAGAATTTTTTGGGGTCTTATTGTGAAGGAATCCA
TGTACCCCTCCACAAATCTATGAAACATTAGCTTCTTGTGAAATACAACT
CTATTCATAGAGTTTGGATACATGGCCATGTTGATCCTGAATGTCTGATA
CCTTGTTCCTTGTAGTGGGAGTTGAAGTGCGAAGTTCTGTACCGTTGGGA
ACATTTGCCGATTTAAGAATAGTTGAGACTTGTAGTTTTCCTATTCTTTC
ACCTTAGTCTGTGGTTGTGTGCAGAATTGGGTGAATCCGTACACGTAGCA
CTTCTGTGTACACGTCATTCCAGCAACCTTTCGGAAGTGTGAACAAAATG
GTGGTATCACTGAGTTGGTATCCCCCATCCAACTTTAACTGAACTACGAG
GGAACGGATTTGGTGCAGTTGTCGCAGGCGCACTTGTGAAGTTACAAGAG
TTGTGTATGTGACGATTTTAGTGGACTCGACCACCTTACACCATAACTTA
CTAGAATGTGGGGTATCGTTGTTGATTTGGAGACTCCAGCGCACGGTTGC
TAAACTATGGATACAGGTACACAAAGCTTGCTCGCTGAACTTGTTCAACA
TGACCTACTCACCCCTCTCCCCTACAAGGCTGAAGAATGATGTTTCAAAG
TGCTTCTTTGGCAACACAATGGTGAAATGAATGAAATCGACCTTCTCTCC
TCTCTCTCCAACTTGTGACTACCCAACCATGCAACCAAACGAAGGTGGCC
ATGGCGTACATAATAAGCTGGGAAGGGTTTGTTGATCTGCTGTCTATCTT
CCCTGTATTTGGGGCATTTAGGAGGTGGATATACTCGCTATCATTCATCA
GGTGAAAGTTCCAAAATTCCTTGACCCCTTCCCTGTTCCCCCACTCCTCA
CACAACATCCGTGTATGCCTCCATCCCTGTGATTTTTCATGCCTTTGCTT
ACGTGAAGAAAGTACTCTCTATCCTCTAGGTCACGCCTACTATTGAGTTT
CTAAAAGTACATATAGTGTGGTGTCTCATTTGACAAACTTCAAAACAAGT
GCATGTTGTTGAGATGGTATGTAGAGCTCTCCAGCAACAGTGGGAAGACA
CGCAAGCCAACAGGACACAACACATTGGAAATTCGCAAAGTACAACCCCC
TTCCACACACACACACACACACACACAAATGCAACGTGCCATGGGCCCTA
TTGCTCATACATCATTCACAGGTACCTGCGTGTAGGCAAGGCCATCAGGG
CTACCCGCCACCGCCGCACCCTT
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Coding sequence (CDS) from alignment at C-tenellus_contig7791:294..1766-

>mRNA_C-tenellus_contig7791.1.1 ID=mRNA_C-tenellus_contig7791.1.1|Name=mRNA_C-tenellus_contig7791.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig7791:294..1766- (Choristocarpus tenellus KU2346)
CTACTTCTTTCTGCCAGCATTACAGGGTTCGCCTGCCTGTTTTATATCGT
CGGAACCTACTTCGACAGCGAGCCTTGGGTTCAGGCGATTGAGATCGTCC
TTGCTGTTGCATTTTTCTTGGACTACGTGCTCTCTGTTGTTGCCGCCCCT
GTGGCCATGGCGTACATAATAAGCTGGGAAGGGTTTGTTGATCTGCTGTC
TATCTTCCCTGTATTTGGGGCATTTAGGAGGTGGATATACTCGCTATCAT
TCATCAGGTACCTGCGTGTAGGCAAGGCCATCAGGGCTACCCGCCACCGC
CGCACCCTT
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