mRNA_C-tenellus_contig7780.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7780.1.1
Unique NamemRNA_C-tenellus_contig7780.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7780.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7780contigC-tenellus_contig7780:1315..5578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1991
Hectar predicted targeting categoryother localisation
Exons4
Cds size1173
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7780.1.1prot_C-tenellus_contig7780.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7780 1348..4793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.297595-UTR-C-tenellus_contig7780:1314..13471680790058.297595-UTR-C-tenellus_contig7780:1314..1347Choristocarpus tenellus KU2346UTRC-tenellus_contig7780 1315..1347 +
1680790058.35477-UTR-C-tenellus_contig7780:4793..55781680790058.35477-UTR-C-tenellus_contig7780:4793..5578Choristocarpus tenellus KU2346UTRC-tenellus_contig7780 4794..5578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.3078234-CDS-C-tenellus_contig7780:1347..15921680790058.3078234-CDS-C-tenellus_contig7780:1347..1592Choristocarpus tenellus KU2346CDSC-tenellus_contig7780 1348..1592 +
1680790058.318414-CDS-C-tenellus_contig7780:1745..23411680790058.318414-CDS-C-tenellus_contig7780:1745..2341Choristocarpus tenellus KU2346CDSC-tenellus_contig7780 1746..2341 +
1680790058.3296356-CDS-C-tenellus_contig7780:3203..33741680790058.3296356-CDS-C-tenellus_contig7780:3203..3374Choristocarpus tenellus KU2346CDSC-tenellus_contig7780 3204..3374 +
1680790058.3397226-CDS-C-tenellus_contig7780:4632..47931680790058.3397226-CDS-C-tenellus_contig7780:4632..4793Choristocarpus tenellus KU2346CDSC-tenellus_contig7780 4633..4793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7780.1.1

>prot_C-tenellus_contig7780.1.1 ID=prot_C-tenellus_contig7780.1.1|Name=mRNA_C-tenellus_contig7780.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=391bp
MRESQDKEDDWVCLVGNRKILPPPFSGHDLGGRNWSHLWRASLSALRAKG
RKPFVDTNPKPPIPRLLSRPKGQDTKLSGGTWEPVTLALKTLPFIKQDKL
LQIIELAKKNSLCPPTSGDCSSMSNKFRVKEPSTEHEIRDAGDSVSGIVR
EYRCLEERRQQSGGTQQGTGRRDQRAIDCVQDQGNSCTREMLCGPYHILN
KKGCVQGSRVEKKLPSEAKKRTRRGDHGSSWHVAGSTAKGPEQKQQFTLH
PQAAGLVFKVARVCRKYAAAGRLKRVVDGEGQKKRVMTKPEFGRFLDLDL
SVTVTAQEVDILLTAFPRPGNSRLVDVARFLLLVENPSLISVEQGNANNI
EGSTARVTEEDPTDTPSNLPAAKFLQEQQTLMTGRLPPLA*
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mRNA from alignment at C-tenellus_contig7780:1315..5578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7780.1.1 ID=mRNA_C-tenellus_contig7780.1.1|Name=mRNA_C-tenellus_contig7780.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4264bp|location=Sequence derived from alignment at C-tenellus_contig7780:1315..5578+ (Choristocarpus tenellus KU2346)
TGGTCGACTTCTCAGTTAGATGGCTATTATAAAATGAGGGAGAGTCAGGA
CAAGGAAGATGACTGGGTCTGCTTGGTGGGAAACAGGAAGATTCTCCCTC
CGCCATTTTCAGGACATGACTTGGGTGGTCGAAACTGGTCACATCTTTGG
AGGGCAAGTCTATCAGCCCTTCGTGCTAAGGGTCGGAAGCCATTCGTCGA
CACCAACCCCAAACCGCCAATCCCTCGACTTCTTTCACGACCCAAAGGCC
AAGACACTAAACTGTCAGGGGGGACATGGTAAGTGAATCGCAATGCGTCT
ACCGAAGTGGAGGTGGAGCAAAGTGCCTAATGAATGGGACCTAAAATAAG
TTGTTCTATGCTCAAGTTCCTCACTATCACTAATACGGAGAGTATTCATT
TGAGTCCTGCCCTACCATTCACGCACAACAGGGAGCCGGTGACACTAGCA
TTAAAAACACTCCCGTTCATTAAACAAGACAAGCTACTGCAGATTATTGA
ACTCGCCAAGAAGAACAGTCTATGTCCACCTACCTCTGGTGACTGTTCTT
CCATGAGTAATAAATTCAGGGTGAAAGAACCCTCAACAGAACACGAGATA
AGAGATGCAGGAGATTCAGTAAGCGGAATAGTACGGGAGTATCGTTGCTT
AGAGGAGCGAAGGCAGCAAAGTGGTGGCACTCAACAGGGTACGGGTCGAA
GAGACCAAAGAGCTATAGACTGCGTCCAAGATCAAGGTAATTCCTGTACC
AGAGAAATGCTTTGCGGCCCCTATCATATCCTAAACAAGAAAGGATGTGT
TCAAGGGAGCAGGGTTGAGAAAAAGCTACCAAGCGAGGCCAAGAAAAGAA
CAAGAAGGGGAGACCATGGAAGCAGCTGGCATGTAGCAGGATCAACAGCT
AAGGGACCAGAGCAGAAGCAACAATTTACACTTCACCCCCAGGCCGCAGG
GCTGGTGTTTAAGGTCGCCAGGGTTTGTCGCAAGTATGCTGCTGCAGGTC
GACTGAAGAGAGTGGTGGATGGAGAAGGCAAGTGCCTGGAGAGTATGTCA
CACAATGTGCAAATGCACGGGTCAGAGGGCTTGGGCTTTGGCATTATCTA
GGTCATTATCTAGGGAGAATATAACTGGTGAGGCACTCGATCTTGAACAT
CAAAGAGAGTGTTGACTGTGTCATATACTGCTAGATCTGGCACGGTCATT
CTACTTTTTGATACCAAGTCAGAGTACAAACCAATCTCTATAGGGTCACT
TTTAATTTTTGGGTGTTGATATGGGATTTCAGATATTATGACTATCTAGT
CAAGCAGGTGCTACAGTGGAGAGATTATTGATTGCACATGGGCTTCTACT
CTAGAATCAAATGCTTAACATGTACCAAAGTTTTATATATACAAACCTTT
TGGGGGGGCGAGCCACCAATTCATTTCTAACATTCCCACTTTCTGCTGAC
TTGGACATTGACAGTCAGCAGCACAATATGATGTTATGTATTCTCCCTGA
ACAGTACAGGTAATTCCACATACACCGTCAACTGTTTTTTCTCATTCATC
TCTTAACACTGACTAAACTAAACCCCTATCTTTAACACTGAAATGTACTC
TTTGAGTATTTAGTATGTGGCAAAACTTGGATGTTGATATTTTAAGTGTT
CCCAAGGGCATGCTTGTGTGGTATATCTCACATCTGCATGCACATGTAGA
TCATTCTTGTAGGACATGGACCATTGACTTCTCATTGGCCAGTTTCGGTT
TTGATAGGTAGATGTGCACTTGGCAGGGCTGGGTAGAGGTCTTGAGACTT
GGCACATTGCACTTCATACCTCCAAATATTTCTGTGTGAGGCCTGTGGGT
ACCCTCTCCCTCTGTATTACACTTATCTGTGGCATGCAGGTCAGAAGAAG
AGAGTCATGACCAAACCAGAATTTGGACGTTTTCTAGACCTTGATCTCTC
AGTGACTGTCACGGCACAAGAAGTGGACATCCTCCTTACCGCCTTTCCAA
GACCAGGGAACTCTCGTCTGGTAGATGTGGCACGCTTCCTGCTTCTTGTG
GAAAACCCAAGTGAGAACTCCTGAGTGAGGGCACTTGAAAGTCCAAGGTT
ACCATGGTTATATTATTGCTGCCGTTAGCCTATCTTTGGAAGTTGTGCTC
CCACGGTCAAATACATGAGGAGATTGCCTGAATTTGACCTGGACTCTCTC
AGTTCCACCAATCTCAGACCTCATCCCAGACATTATTTTCGTATCAGAAC
ACAGGACCATAAAGGTATGTATGGCCAATCCTATCTCATTCTCATCGCCC
CAATGTTCTACCTCAAACCCACGTGGGTGGGGTGTGCTACTCTGCACATG
TTCCAATCCAAGGACCTCTGTGTTTAATTCCAAGCGACCTAGAGGGACTG
TTGTCCGAGAGCTTATTAACATCTTGACAGCTTTTTCGCAACTGTCAAGG
GGGAGTAAACCCTAGTGTGGTTCCTTTGCTCCTTGCTTTTCAGTAGTCAA
GACACCAATCAGTCGAACTGTTGAAGAATTGGGTCACAGAAGGTGACTGG
CCTTGGGCAGGTGATTCAGCAGCACGCACTCTAGCCCTGTCACTGTGTCA
CTCTAGGGTGATTTCAGGTTTCTTTCTCCTTGAGGCATGCACAAGGTTGG
AAATAGACGCTGTAATTTCAACTCTCATTTTTTTTATTGTTTCCATACTT
GCAGAGAGTTGGGTTGAGGACCTCGAGTATATGTGCATAGGACAGCAAGC
TATTGCTGGGTATCTTCATGAGACTTTGGATTCGTGATGCAGGCTCATTC
CTGGATACTGTATCCTTGGGGGCAAATTTCAATCTGCGCAGACTACTTCT
TAATCAGCAACCTTGCTTAGAGATACCTATTTGTCTCATGTGCCACTCGA
GAATGCATGATGTCTTAGTCTACAACAGTGCTGTCATTTCCTTCTTGATG
GTCATAGTGCATTCATCGGTCTAGTGTGGGGCAAGTACCAAGAAGTCCCC
ATCCGTGATACCACTACAGCATTTGTGTAGCTTGTCTTCACCAGGGTGCT
ACATGTAGGACAAACAAATTCATACTCAAAACAGCTGGAAAAGCTGGAGG
GTGTTTCCTCACTGTAGAAAAAATAACCTCCTAGAATACTGACAACAGAA
AATCCATGTTGGCTTTGTCCTCAAACAGGGCAACTATGATAGACTATGAT
GTCATGGTTTATCTGAAGCTCATTACAACAACTACTCCTTTGCAATTCTT
TCCCCATATCTAAACATTATACCCTTTTCTGATGTATTGCACACACTTGC
CTCACTCGGAACAACAAGGCCTCATATCAGTGGAACAAGGCAATGCTAAT
AATATAGAAGGGTCGACTGCAAGAGTCACTGAGGAGGACCCAACAGACAC
GCCATCAAACCTGCCCGCTGCAAAATTTCTACAAGAACAACAAACTCTCA
TGACAGGTCGTCTGCCTCCACTGGCATAGGATGTCCACTTGATATTGAAT
TGTTTAGGCATAGGCTACCACATTTTGTCGTCTCAGCCCACCATGCCTGA
CCATGACTGCTAGAACCCCCAGGGAGTGCTGAGGAGATATGATGGTGTAC
GCCAATAGTGGCCATGGCAAGACAGTTGCTGGTTTGTTCCTGGGTGAGGA
AGCTTAATCACAAGAACAGTTCTGGATGGTAATCCTGATGAAAAGTTGAT
GTCATGTCCTGTTTGTTGCCCATGCCATTACAAGGTCAGCCACACATTAT
TAGGGAGAGTGTAGTAGAGTTCTATTTGAGCCTTTTTGGATATGTTATGT
TCAACTTCCTCGAGGAACTCAGTCCAGAGAAGTGTGTTACCGGGAATGTT
CACAAAGAATACCTCATTTTTTTATTGAGGGCACTACCATTAGCCTTAAC
CCTGGACACTGTTTCCAGGTTTCCAGCAGCTATATCCATGAGCACAGTGA
AGGGTGAGTGATACTCTTTCTTGGACAATAGGCCAATTCTGTTTGAGAAG
TATACTTTATTTGACAGGAAGTCTTGCTCCAAAGGCAAGAACATAGAACT
ATTGCTGGCAGGTAGAATAGCAATATAGGAGCTCAGGCATGAATATAAGT
AGGTTCTTGGTCCATAGAACTTTGAGTGTCACATTGTTGTCTCATTACCG
GACTGTAAGAGATACTTTTGTATATCCCATGCATGACTGCAATGCCTTGG
ATTACACGTTTGAAAGCCACAGCAAGGATGAAAGCCTTCGCCATTGCCTA
AATGCTTGTTTGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7780:1315..5578+

>mRNA_C-tenellus_contig7780.1.1 ID=mRNA_C-tenellus_contig7780.1.1|Name=mRNA_C-tenellus_contig7780.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1173bp|location=Sequence derived from alignment at C-tenellus_contig7780:1315..5578+ (Choristocarpus tenellus KU2346)
ATGAGGGAGAGTCAGGACAAGGAAGATGACTGGGTCTGCTTGGTGGGAAA
CAGGAAGATTCTCCCTCCGCCATTTTCAGGACATGACTTGGGTGGTCGAA
ACTGGTCACATCTTTGGAGGGCAAGTCTATCAGCCCTTCGTGCTAAGGGT
CGGAAGCCATTCGTCGACACCAACCCCAAACCGCCAATCCCTCGACTTCT
TTCACGACCCAAAGGCCAAGACACTAAACTGTCAGGGGGGACATGGGAGC
CGGTGACACTAGCATTAAAAACACTCCCGTTCATTAAACAAGACAAGCTA
CTGCAGATTATTGAACTCGCCAAGAAGAACAGTCTATGTCCACCTACCTC
TGGTGACTGTTCTTCCATGAGTAATAAATTCAGGGTGAAAGAACCCTCAA
CAGAACACGAGATAAGAGATGCAGGAGATTCAGTAAGCGGAATAGTACGG
GAGTATCGTTGCTTAGAGGAGCGAAGGCAGCAAAGTGGTGGCACTCAACA
GGGTACGGGTCGAAGAGACCAAAGAGCTATAGACTGCGTCCAAGATCAAG
GTAATTCCTGTACCAGAGAAATGCTTTGCGGCCCCTATCATATCCTAAAC
AAGAAAGGATGTGTTCAAGGGAGCAGGGTTGAGAAAAAGCTACCAAGCGA
GGCCAAGAAAAGAACAAGAAGGGGAGACCATGGAAGCAGCTGGCATGTAG
CAGGATCAACAGCTAAGGGACCAGAGCAGAAGCAACAATTTACACTTCAC
CCCCAGGCCGCAGGGCTGGTGTTTAAGGTCGCCAGGGTTTGTCGCAAGTA
TGCTGCTGCAGGTCGACTGAAGAGAGTGGTGGATGGAGAAGGTCAGAAGA
AGAGAGTCATGACCAAACCAGAATTTGGACGTTTTCTAGACCTTGATCTC
TCAGTGACTGTCACGGCACAAGAAGTGGACATCCTCCTTACCGCCTTTCC
AAGACCAGGGAACTCTCGTCTGGTAGATGTGGCACGCTTCCTGCTTCTTG
TGGAAAACCCAAGCCTCATATCAGTGGAACAAGGCAATGCTAATAATATA
GAAGGGTCGACTGCAAGAGTCACTGAGGAGGACCCAACAGACACGCCATC
AAACCTGCCCGCTGCAAAATTTCTACAAGAACAACAAACTCTCATGACAG
GTCGTCTGCCTCCACTGGCATAG
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