mRNA_C-tenellus_contig778.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig778.6.1
Unique NamemRNA_C-tenellus_contig778.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.550e-94
Identity = 136/156 (87.18%), Postives = 149/156 (95.51%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVAN-GESGFGSKS 465
            MIKFVLMVNKMGQTR+SSYY+WM IPERVALEAEVVRRCF+RSELQCSFFEFRGYKI+YRRYASLFFIVGVGV+SDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHF+LDEMVLNGYICEGN++NVLK + L+D  ++ G+S FGSKS
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKS 156          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.340e-91
Identity = 133/157 (84.71%), Postives = 148/157 (94.27%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKV-ANGESGFGSKSL 468
            MIKFVLMVNKMGQTR+SSYYEW+ IPERVALEAEVVRRCF+RSELQCSFFEFRGYKI+YRRYASLFFIVGV   SD+ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHF+LDEMV+NG +CE N+DN+LK +QL+DKV AN ++GFGSKSL
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKSL 156          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.010e-76
Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462
            MIKF+LMVNK GQTR+SSY+EWM+IPERVALE+E++R+C +R+E QCSF E+RGY+++YRRYASLFFIVGVG  +D+ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HF+LDEMV+NGYI E N+ N+LK +  +DK+AN E    S+
Sbjct:    1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.740e-71
Identity = 105/145 (72.41%), Postives = 126/145 (86.90%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 435
            MIKFVLMVNK GQTR+SSYYEW++I ER ALEAE++R+C AR+E QCSF E RGYK+VYRRYASLFFIVGV  + D+ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HF+L+EMV NG++ E N+ NVLK + +LD ++
Sbjct:    1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA)

HSP 1 Score: 219 bits (557), Expect = 8.490e-71
Identity = 104/144 (72.22%), Postives = 126/144 (87.50%), Query Frame = 1
Query:    4 IKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 435
            IKFVLMVNK GQTR+S+YYEW+S+PERVALEAE++R C +RSE QCSF E+RGYK+VYRRYASLFFIVGV  + D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HF+LDEMV++G + E N+ N+LK + L++K +
Sbjct:    3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN)

HSP 1 Score: 218 bits (556), Expect = 1.250e-70
Identity = 103/144 (71.53%), Postives = 125/144 (86.81%), Query Frame = 1
Query:    4 IKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 435
            I+F+LMVNK GQTR+S+YYEW+ +PERVALE+E++R+C +RSE QCSF E+RGYK+VYRRYASLFFIVG   E D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HF+LDEMV+NG I E N+ NVLK + L++K +
Sbjct:    3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.460e-69
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDD--------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462
            MI+F+L VNK GQTR+SSYY WMSIPERVALEAE++R+C +RSELQC F E+RG+K++YRRYASLFFIVGV  E DD              ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HF++DEMV+NG+I + N+ N+LK + L++K +  E    S+
Sbjct:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV--EGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSR 166          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 8.370e-69
Identity = 99/154 (64.29%), Postives = 130/154 (84.42%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462
            MIKFVLMVNK GQTR++SY++W  I ERVALEAE++RRC +R+E QCSF E+RG+K+VYRRYASLFF+V V  + ++ENEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+++DEMV+NG I E N+ N+LK + L+DK+A+ E G  S+
Sbjct:    1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.560e-68
Identity = 105/154 (68.18%), Postives = 129/154 (83.77%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462
            M+KFVLMVNK GQTR+SSYYEW+ + ER ALEAE++R+C +R+E QCSF E+RGYK++YRRYASLFFIVG+    D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HF+L+EMV NG I E N+ N+LK + L++K A+ +S F SK
Sbjct:   20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169          
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.140e-67
Identity = 100/143 (69.93%), Postives = 124/143 (86.71%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDK 429
            MIKFVLMVNK GQTR++ YY+++SI ERVALEAE++R+C +R+E QCSF E+RGYK++YRRYASLFFIVGV    D ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HF+LDEMV+NG I E N+ ++LK + L++K
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQ-NDDSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPP6_ECTSI3.550e-9487.18AP complex subunit sigma n=1 Tax=Ectocarpus silicu... [more]
A0A835Z9B6_9STRA1.340e-9184.71AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2UUI5_9STRA1.010e-7670.78AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A2R5GZ26_9STRA4.740e-7172.41AP complex subunit sigma n=1 Tax=Hondaea fermental... [more]
A0A7S3ZZG7_9STRA8.490e-7172.22AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
F0Y567_AURAN1.250e-7071.53AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
W7U353_9STRA2.460e-6962.50AP complex subunit sigma n=2 Tax=Nannochloropsis g... [more]
A0A7S3GXI4_9STRA8.370e-6964.29AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
A0A7S2FA09_9STRA6.560e-6868.18AP complex subunit sigma n=1 Tax=Florenciella parv... [more]
F0W0A7_9STRA2.140e-6769.93AP complex subunit sigma n=21 Tax=Oomycota TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig778contigC-tenellus_contig778:13899..14767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPP6
PFAMsAcyltransferase,Clat_adaptor_s
Model size471
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041
KEGG koko:K00649,ko:K12403
KEGG ReactionR01013
KEGG Pathwayko00564,ko04142,ko04146,map00564,map04142,map04146
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.82e-95
EggNOG OGsCOG5030@1|root,KOG0934@2759|Eukaryota
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-18_001980.1
EC2.3.1.42
Descriptionprotein transport
Cds size471
COG categoryU
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.236202-CDS-C-tenellus_contig778:13898..140811680790058.236202-CDS-C-tenellus_contig778:13898..14081Choristocarpus tenellus KU2346CDSC-tenellus_contig778 13899..14081 +
1680790058.24853-CDS-C-tenellus_contig778:14269..143741680790058.24853-CDS-C-tenellus_contig778:14269..14374Choristocarpus tenellus KU2346CDSC-tenellus_contig778 14270..14374 +
1680790058.2621706-CDS-C-tenellus_contig778:14584..147671680790058.2621706-CDS-C-tenellus_contig778:14584..14767Choristocarpus tenellus KU2346CDSC-tenellus_contig778 14585..14767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig778.6.1prot_C-tenellus_contig778.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig778 13899..14767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig778.6.1

>prot_C-tenellus_contig778.6.1 ID=prot_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=157bp
MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFF
EFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQS
VCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESG
FGSKSL*
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mRNA from alignment at C-tenellus_contig778:13899..14767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig778.6.1 ID=mRNA_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=869bp|location=Sequence derived from alignment at C-tenellus_contig778:13899..14767+ (Choristocarpus tenellus KU2346)
ATGATAAAGTTCGTGTTGATGGTGAATAAAATGGGTCAGACTAGAATATC TTCATATTATGAATGGATGTCCATCCCTGAGAGGGTGGCCCTGGAGGCAG AGGTAGTTCGGCGATGTTTCGCGAGGTCGGAGTTGCAGTGCTCGTTTTTT GAGTTTAGGGGCTACAAGATTGTATATCGACGGGTGAGATGCACACACTT GCGGTTTGAGTCGTGAGTACGTAGAAGTCAAGGGCTAGCTTTGGAGAAGC ACTGAGTGAGCATGTTTACCTTCCACCAAGGCGGTCAAATTGGGTATAGG TATCAAATCTTGGGCACCCTCCACTGAAGCCAATTTCACCGTGCGCGCTT TCGTTATATGATGCGGCGCAGTATGCATCACTCTTCTTTATTGTGGGAGT GGGCGTTGAGAGCGATGACGAGAACGAACTTGGGGTGCTCGAGTTTATCC ACTGCCTTGTGGAAACCTTGGACAAGGTATGCCTCCATAGATTACCACCT CCCTCTCTTCTATGGCCTATCTAAAAAGGATCGATTCTATGGAGTAGGGG AACTAGACCTGCAAACAAAGTTATTGCACACGACCATCCGTTTTTTTTAT CAAGTAAAAGGTCGGCCTTTTGACCAATTCTGTACCGATCCTTCTTCAAC CCAACAATTGACCAAAGAATATCGTCCCCACCACAGTACTTTCAGAGTGT ATGTGAATTGGACATAATGTTCAATCTGGAGAAAACGCACTTCATGCTGG ATGAGATGGTGCTTAACGGGTACATCTGCGAGGGGAACCAAGACAATGTG CTCAAACATATGCAACTTCTGGATAAAGTTGCAAATGGCGAATCAGGGTT TGGAAGTAAATCATTGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig778:13899..14767+

>mRNA_C-tenellus_contig778.6.1 ID=mRNA_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=471bp|location=Sequence derived from alignment at C-tenellus_contig778:13899..14767+ (Choristocarpus tenellus KU2346)
ATGATAAAGTTCGTGTTGATGGTGAATAAAATGGGTCAGACTAGAATATC
TTCATATTATGAATGGATGTCCATCCCTGAGAGGGTGGCCCTGGAGGCAG
AGGTAGTTCGGCGATGTTTCGCGAGGTCGGAGTTGCAGTGCTCGTTTTTT
GAGTTTAGGGGCTACAAGATTGTATATCGACGGTATGCATCACTCTTCTT
TATTGTGGGAGTGGGCGTTGAGAGCGATGACGAGAACGAACTTGGGGTGC
TCGAGTTTATCCACTGCCTTGTGGAAACCTTGGACAAGTACTTTCAGAGT
GTATGTGAATTGGACATAATGTTCAATCTGGAGAAAACGCACTTCATGCT
GGATGAGATGGTGCTTAACGGGTACATCTGCGAGGGGAACCAAGACAATG
TGCTCAAACATATGCAACTTCTGGATAAAGTTGCAAATGGCGAATCAGGG
TTTGGAAGTAAATCATTGTAG
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