mRNA_C-tenellus_contig7752.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7752.2.1
Unique NamemRNA_C-tenellus_contig7752.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A835Z6W0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.490e-35
Identity = 74/178 (41.57%), Postives = 105/178 (58.99%), Query Frame = 1
Query:   13 ELPLLRSLAACNRVILGAILVLLVPLF-LGAVSNSSPVTMPITSYGN-TFSWNFGWGRPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGRCALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIGQWKVRYAYRHLHGGGCKRVREMRQEL 540
            E+P LR L    R +L A + LL PL  L A  ++ P+  PIT+Y + + SWN+GWGRP T +    +GMF +YHPGVR +C+ GL   L LDT+++ DL  +  CV +GRC + KGYT   L+    R++A+      AL  + YL+   G ++ RY YR LH G   R   +R+EL
Sbjct:   38 EIPQLRFLIRALRGLLLAYIALLAPLLTLAARWDAMPIPRPITAYRDGSGSWNYGWGRPMTGMASAFMGMFMDYHPGVRCICMGGLSVGLVLDTISAIDLDTQRYCVAEGRCPMAKGYTAQLLQWLYFREMAACAIGTCALAHILYLSAVTGVFRTRYTYRQLHTGQHNRAAALRKEL 215          
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A7S2BL85_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL85_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.340e-17
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    1 KESQELPLLRSLAACNRVILGAILVLLVPLFLGAVSNSSPVTMPITSYGN------TFSWNFGWGRPCTHLIF-ISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGRCALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIG 462
            + S EL +LR   +    ++  I+VL  PL   A S   P+    T++        + SWNFG GRP + ++F  ++G     HP +RW  +  L   + LDT+A    H  + C+  G+C    GY + G+ L   R++A+++ +VWALL++ ++ +  G
Sbjct:   50 RPSDELSVLRRTISTLARLMFWIVVLATPLAFNAFSLGHPLVRDATTFATKGLGVGSMSWNFGVGRPISVVVFGAALGATASVHPAMRWALVLLLVAQVCLDTLACGQFHLRLECIESGKCLYVPGYDKYGMFLLWARELAALVLDVWALLILGHIFVMHG 210          
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A812PQF8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PQF8_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 2.090e-9
Identity = 32/108 (29.63%), Postives = 52/108 (48.15%), Query Frame = 1
Query:  166 FGWGRPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGRCALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIGQWKVRYAYR 489
            +G  RP  HL+ I +G F   H   RW+ +   C  +  DT +   +  ++ C  +G C    G++   L +  +R   ++ FE+W +L+ AYL   IG    RY  R
Sbjct:   84 YGGARPTAHLLVIFMGFFVNSHHCFRWLTIMAQCVFIIFDTFSVAHIDLQLQCRSNGTCESSDGWSVMDLTVIQVRHYVALWFEIWTVLITAYLMFVIGICWPRYPVR 191          
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A1V9ZIU6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIU6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.600e-6
Identity = 35/107 (32.71%), Postives = 51/107 (47.66%), Query Frame = 1
Query:  178 RPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGR-CALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIGQWKVRYAYRHL 495
            R    L+   +G     HP +R +   G+   +  DT++        TC   G  C+   G T G L+   +RD+ SI+ E+WA LL+ YL L+IG    RY  R L
Sbjct:   94 RALASLVLTLLGFGTNTHPSIRHLFGLGMLGLVGFDTVSEVHYVSATTCGSKGSLCSTLPGITTGQLQQLMVRDLISIVLELWAFLLVCYLCLSIGCCFSRYTQRQL 200          
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A067CFV1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CFV1_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 9.160e-6
Identity = 33/106 (31.13%), Postives = 48/106 (45.28%), Query Frame = 1
Query:  178 RPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGRCALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIGQWKVRYAYRHL 495
            RP    +  + G    +HP VR + L  +   +  DT++         C   G+   P   T   L    +RD+ SI+ E+WA L +AYL L IG    RY+ R L
Sbjct:   94 RPLLGALCTAFGFSTNFHPSVRHLFLVAMLSLVTCDTISEVHYLSIAECAAKGQLCSPIPVTSEKLLRLVLRDLVSIVLELWAALQVAYLCLAIGCCSSRYSARQL 199          
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A1V9Y739_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y739_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.640e-6
Identity = 34/107 (31.78%), Postives = 51/107 (47.66%), Query Frame = 1
Query:  178 RPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGRCALP-KGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIGQWKVRYAYRHL 495
            RP   +I  + G    +HP  R +  A +   +A DT++       + C   G    P  G T   L+   +RD  +I+ E+WALL +AYL L++G    RY  R L
Sbjct:   99 RPLAGMIMTTFGFATNFHPSFRHLFGAAMVGLIAFDTVSEVHYLSILMCAAKGIVCSPIAGVTTAELQNYMLRDFIAIVLELWALLQVAYLCLSVGCCFSRYTQRQL 205          
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Match: A0A485KQI8_9STRA (Aste57867_10249 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQI8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.840e-5
Identity = 34/124 (27.42%), Postives = 60/124 (48.39%), Query Frame = 1
Query:  127 MPITSYGNTFSWNFGWGRPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASYDLHREITCVWDGR-CALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLNLTIGQWKVRYAYRHL 495
            M +   G + S+    GRP   ++ ++ G     H   R   +       ALDT++       ++C   G  C+     T   L+L   RD+ +I FE+W++L+ A+L+++IG    RY++R L
Sbjct:   84 MSMPDSGKSSSFFDSLGRPLGAMLGLAFGFSTNLHASFRIFVVXXXXXXXALDTVSEVRYVSILSCGKKGAVCSASAAITPTRLKLLAARDLVAIAFELWSMLVTAFLSVSIGICVSRYSHRQL 207          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7752.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z6W0_9STRA4.490e-3541.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BL85_9STRA6.340e-1730.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812PQF8_9DINO2.090e-929.63Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A1V9ZIU6_9STRA2.600e-632.71Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CFV1_SAPPC9.160e-631.13Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9Y739_9STRA9.640e-631.78Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485KQI8_9STRA1.840e-527.42Aste57867_10249 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7752contigC-tenellus_contig7752:1884..2441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000022059
Model size558
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.11e-05
EggNOG OGs2D00G@1|root,2SCBE@2759|Eukaryota,1MI0X@121069|Pythiales
Descriptionfunction. Source PGD
Cds size558
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790056.2046585-CDS-C-tenellus_contig7752:1883..24411680790056.2046585-CDS-C-tenellus_contig7752:1883..2441Choristocarpus tenellus KU2346CDSC-tenellus_contig7752 1884..2441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7752.2.1prot_C-tenellus_contig7752.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7752 1884..2441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7752.2.1

>prot_C-tenellus_contig7752.2.1 ID=prot_C-tenellus_contig7752.2.1|Name=mRNA_C-tenellus_contig7752.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=186bp
KESQELPLLRSLAACNRVILGAILVLLVPLFLGAVSNSSPVTMPITSYGN
TFSWNFGWGRPCTHLIFISVGMFFEYHPGVRWVCLAGLCQALALDTMASY
DLHREITCVWDGRCALPKGYTRGGLRLAGMRDVASILFEVWALLLMAYLN
LTIGQWKVRYAYRHLHGGGCKRVREMRQELAKHALK
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mRNA from alignment at C-tenellus_contig7752:1884..2441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7752.2.1 ID=mRNA_C-tenellus_contig7752.2.1|Name=mRNA_C-tenellus_contig7752.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=558bp|location=Sequence derived from alignment at C-tenellus_contig7752:1884..2441+ (Choristocarpus tenellus KU2346)
AAAGAGTCCCAGGAATTGCCCCTCCTTCGATCCTTAGCGGCTTGCAATCG TGTTATCTTGGGAGCAATACTCGTACTCCTCGTTCCTCTTTTCTTGGGCG CAGTGAGTAACAGTTCTCCTGTGACTATGCCAATTACTTCATATGGGAAT ACGTTCTCGTGGAACTTTGGCTGGGGACGACCCTGTACCCACCTTATCTT CATTAGTGTGGGCATGTTCTTCGAATATCACCCAGGAGTAAGGTGGGTCT GCCTCGCGGGGCTTTGTCAGGCGTTAGCCCTCGACACGATGGCCTCTTAC GACCTTCATAGGGAAATAACTTGTGTATGGGATGGAAGGTGCGCCCTTCC CAAAGGCTACACTCGGGGTGGTCTTCGACTGGCGGGGATGAGGGACGTAG CCTCCATATTGTTCGAGGTGTGGGCACTCCTCCTCATGGCGTACCTGAAC TTGACCATTGGTCAATGGAAAGTTAGATACGCATACAGGCACCTTCATGG TGGAGGTTGCAAGAGAGTGAGGGAGATGCGCCAGGAACTTGCCAAGCATG CACTTAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7752:1884..2441+

>mRNA_C-tenellus_contig7752.2.1 ID=mRNA_C-tenellus_contig7752.2.1|Name=mRNA_C-tenellus_contig7752.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=558bp|location=Sequence derived from alignment at C-tenellus_contig7752:1884..2441+ (Choristocarpus tenellus KU2346)
AAAGAGTCCCAGGAATTGCCCCTCCTTCGATCCTTAGCGGCTTGCAATCG
TGTTATCTTGGGAGCAATACTCGTACTCCTCGTTCCTCTTTTCTTGGGCG
CAGTGAGTAACAGTTCTCCTGTGACTATGCCAATTACTTCATATGGGAAT
ACGTTCTCGTGGAACTTTGGCTGGGGACGACCCTGTACCCACCTTATCTT
CATTAGTGTGGGCATGTTCTTCGAATATCACCCAGGAGTAAGGTGGGTCT
GCCTCGCGGGGCTTTGTCAGGCGTTAGCCCTCGACACGATGGCCTCTTAC
GACCTTCATAGGGAAATAACTTGTGTATGGGATGGAAGGTGCGCCCTTCC
CAAAGGCTACACTCGGGGTGGTCTTCGACTGGCGGGGATGAGGGACGTAG
CCTCCATATTGTTCGAGGTGTGGGCACTCCTCCTCATGGCGTACCTGAAC
TTGACCATTGGTCAATGGAAAGTTAGATACGCATACAGGCACCTTCATGG
TGGAGGTTGCAAGAGAGTGAGGGAGATGCGCCAGGAACTTGCCAAGCATG
CACTTAAG
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