mRNA_C-tenellus_contig775.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig775.1.1
Unique NamemRNA_C-tenellus_contig775.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig775.1.1 vs. uniprot
Match: D7FRM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM7_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.840e-28
Identity = 65/160 (40.62%), Postives = 99/160 (61.88%), Query Frame = 3 
Query:  510 VTHSECLMLSRVLSEKSMLPPVCRAPPSVR------NISNQMVVKP---------SQSSLIRRLSGGIPGAFNTIDVSPASSKKELGGVVSTEECQTLADYLTPSVGGLYLLPGACSAMLKADEARLAEQFEKENAKVYDRLKRRNSMVEQQGY-PPTMC 941
            VTH EC++L+RVLS+KS LP  C  PP         + S+Q   +P         +   L+RR++G +    +++     + KKE+GG ++ E+CQ LADYL+PSVGG YLLP AC  +LK  +   A+ +  +NA++Y RLK+R++ + ++GY PPTMC
Sbjct:   43 VTHQECVLLNRVLSDKSTLPSACFVPPGAEAAARRASSSSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAKMYVMQNAEMYVRLKKRHTGMAEEGYFPPTMC 202
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BLAST of mRNA_C-tenellus_contig775.1.1 vs. uniprot
Match: W7TGX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGX2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.430e-14
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 3 
Query:  510 VTHSECLMLSRVLS--EKSMLPPVCRAPPSVRNISNQMVVKPSQSSLIRRLSGGIPGAFNTIDVSPASSKKELGGVVSTEECQTLADYLTPSVGGLYLLPGACSAMLKADEARLAEQFEKENAKVYDRLKRRNSMVEQQGYPPT 935
            V   EC+ML RVL   +   LP  C+      N ++Q     +    + RLS      FN           ++ GVV+ +EC  L D L    GG+  LP +C+AML  +E  L ++FE ENAKVY RLKRRNS V ++ +PPT
Sbjct:   37 VHMKECMMLRRVLGADKADSLPRACKL-----NATSQ-----ANQGFLTRLSH-----FN--------ESSDVAGVVNIKECHKLQDSLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVGKEDFPPT 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig775.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRM7_ECTSI6.840e-2840.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TGX2_9STRA4.430e-1438.19Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig775contigC-tenellus_contig775:2714..5565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1860
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002470.1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790055.8151014-UTR-C-tenellus_contig775:2713..32431680790055.8151014-UTR-C-tenellus_contig775:2713..3243Choristocarpus tenellus KU2346UTRC-tenellus_contig775 2714..3243 +
1680790055.8464873-UTR-C-tenellus_contig775:4649..55651680790055.8464873-UTR-C-tenellus_contig775:4649..5565Choristocarpus tenellus KU2346UTRC-tenellus_contig775 4650..5565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790055.8263822-CDS-C-tenellus_contig775:3243..34301680790055.8263822-CDS-C-tenellus_contig775:3243..3430Choristocarpus tenellus KU2346CDSC-tenellus_contig775 3244..3430 +
1680790055.8380764-CDS-C-tenellus_contig775:4422..46491680790055.8380764-CDS-C-tenellus_contig775:4422..4649Choristocarpus tenellus KU2346CDSC-tenellus_contig775 4423..4649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig775.1.1prot_C-tenellus_contig775.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig775 3244..4649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig775.1.1

>prot_C-tenellus_contig775.1.1 ID=prot_C-tenellus_contig775.1.1|Name=mRNA_C-tenellus_contig775.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
MLSRVLSEKSMLPPVCRAPPSVRNISNQMVVKPSQSSLIRRLSGGIPGAF
NTIDVSPASSKKELGGVVSTEECQTLADYLTPSVGGLYLLPGACSAMLKA
DEARLAEQFEKENAKVYDRLKRRNSMVEQQGYPPTMC*
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mRNA from alignment at C-tenellus_contig775:2714..5565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig775.1.1 ID=mRNA_C-tenellus_contig775.1.1|Name=mRNA_C-tenellus_contig775.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2852bp|location=Sequence derived from alignment at C-tenellus_contig775:2714..5565+ (Choristocarpus tenellus KU2346)
ACCCACACTCGCTTCCGCACTCAATCCAGGTCGATGGCTCTTTCGAAGAG
TTAGAGGAGTTCGAGGACCGGAACGAGGTTACGAGTGAGTCCTACTGAGG
AGGAATTTTCAACCAGACTTGACCAATATATCCAATACCCAGATACAATT
CGACTGGGTTGACATTTCATGCCCTCAATATCGCAGCATAGTCGCTGTGG
AAGCACCTTGGGTATCCCCACTATAGCAGCACCTTTCCGAATCTCACATT
GGTTGGGGCTACGCTTATAGTTGCTGGTTGTGCATTCCTCTTCTGGTCGA
GTTATTATAGGTATCGTGGTATCTTTATATCTACGTTGCCGGAGACATCA
TTTTGCGCTATTTGTTGCTATATAGGCAAGAATCCACCACCTTGGTGAGG
TTACAACATATCAGAACCCCTAGTGTCACCTTATTTGAATCCCCTCACCC
GATCTAGTCCCTCTTGACCTACGTTTGTACTTTTGTCCCTCGCGCCATAA
ACAGATACCGTAACGCACTCCGAGTGCCTGATGCTGTCACGGGTGCTCTC
TGAAAAGAGCATGCTCCCCCCTGTGTGTCGAGCACCCCCATCGGTACGCA
ACATATCCAACCAGATGGTGGTCAAGCCGTCTCAGTCGAGTTTGATCCGA
CGTCTCTCCGGGGGCATCCCTGGTGCTTTCAACACGATTGATGTGAGCCC
TGCATCGTCGAAGAAAGGTAGGTGCTCCTCTGCGCCCCCCAAATGTTGCC
CTTCTTGACCCGATAACTGCTTACGATTGTCTCACAAGTCTGCTTACTAT
TCCTTCGTATGATCCTCATGTGGACATGATCAGTCCTTAGATCTCTGGAG
TGTTCAAATGTTCCACATCATTTTGGTGTAGGTGCTGGTCCTCAGTGAGC
TCTGGGCTTGTTCCTGTGCTATAGAGCAAAGCACCTATCTCTGTTTCACA
AGTGTGTATCCTCCCGGAATCGATGTTGATACACAATGTAGTCGCCACGA
AGACTTAAGTCAGATATGCTCCAACTCCAAAGTTAGGCTTCATTTCTAGC
TCTGAAATATACCCTTGAAGAAGGTGATTCGTTTCACGCTGACTTACTTG
CAATTTATATTGTAGCTTCGAATCACGACAGTTAGCTAAACGGTAAATTA
TAGTTTTTTGTGCTCCCCCCCTCCCTAAAAACCCTCTAATATGTAGGCAT
CAGATTTCGAAGAAGTAACCCCACTCTGTTGGCTAGTGAAACTATTTCAA
GCTGTACATCCTACGTACAGGCAGATGCGATTCAGCCTATGCATGAAGAG
GTTATTTTCAACTCTGCACTTATGATGATAATGCAATGCGTGTTTCTATA
CAGATTTCTGTAGAACCTGCTGAGGATATTGAGATACGATTATGCCTATC
CAGTGTATTCCTCTTGGATTGTTTATTAAACACCTCAAGTTGTGTAGCAA
TATGCACCGCCGAGTGCGTATCTTGGGTTAGGGAGAGGTATATGGATCAT
GTATCCGTTTCTGCCTTTAAGTGAGAAGTCTTGTCAAAGGTTGTCAGAAT
TTGTAATTAGGCACAGCTTTACCGACCTATCATCTTGGCTTCCTGACGTC
CTTCTCCTGTTGTGCCTCAAGTCACTCTTACAACACATATTTGCCATTTT
ATTGGTCAATGTCACTGATGGTTCATTTCAATGCTGCTTCGCTCTTTGGC
TCAACACAGAGCTTGGAGGGGTTGTTTCTACAGAGGAGTGCCAAACTCTA
GCTGATTATCTCACCCCATCTGTAGGAGGCCTGTATCTTCTACCTGGAGC
GTGCTCAGCTATGCTCAAAGCAGACGAAGCCAGACTAGCAGAGCAATTTG
AGAAGGAGAACGCCAAGGTTTATGATCGTCTCAAGCGTCGTAATTCCATG
GTGGAGCAACAGGGTTACCCGCCCACCATGTGTTAAATGACACAATGTCA
AGTGTGTAGTTGCAGCACAATGGTAGCAGCAAAGTAGGTATGTGCGTCAT
CATGGTCGTCTTGTGTGGATAGATATGCAGTAGTCACCTTTGTACAAGCT
ATATGTTTCATTCTATGTCCCCCAATCGTATCATACACCGTGGATACTTC
CAACTGCTAATCTGACTATGCACGTCAGATGAAGGCGTGTGTATGCAAGG
CAAGTTGCGGTTGGAAACAAAGGGTATACCTGCCTGGATTTTGGATCGGT
GTTTTATCCCACGTCCCCTGCCCTGCTTCGTGGTGGCCCTTCTGCACAAT
GATAACATGCCTAACACGTTGTGAGGTTACCTGTTGTTGTTGTTTTGCTC
ATAGGGTTGTCCGTATGTTGCCAGGCATTCAATGAAATTGTGAGTCATGT
ATTAGATTACCCACAAATTGCTTCCTCTGTGAATTGCTGTTCAAGGTCCA
AAAACGTGTGTTCCATATTTCTATCCATGTCATTGCAGTAGTACATACTT
CCTTATAAATTGAGGTTTATATATGGGACGCTTCCCTGTGAGTTGCTCAA
GATGAAAACACGATGCATTGGGGGGAGTTGAACGTGAAGCAAGGGTTGGA
TCGAAATTATTTGAGTTTTGTGAATTTTAAGAGGAGCTGTTCTTTCGGAC
AGTATTTGTAGTCGGTTTCAATCCGCCCACTGTGTTTGTGTAGATTATGT
GGCTTTTTACTAGAGGATAGTTCTAAGTTACCTAGTAATCACTTTCAGTA
TATGGTCGTTTTAAGAATACAATACTACAACACATTTAGAAAGATGCTGT
GAATGCTTTGTGCTGGCAACTTTGAGAGTTCGTAAGTATCAAGCAAGACT
ACTGCTCAAGCAAAATATATATTTTTTTCAACTACACATTTTTGAGAGTG
CT
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Coding sequence (CDS) from alignment at C-tenellus_contig775:2714..5565+

>mRNA_C-tenellus_contig775.1.1 ID=mRNA_C-tenellus_contig775.1.1|Name=mRNA_C-tenellus_contig775.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig775:2714..5565+ (Choristocarpus tenellus KU2346)
ATGCTGTCACGGGTGCTCTCTGAAAAGAGCATGCTCCCCCCTGTGTGTCG
AGCACCCCCATCGGTACGCAACATATCCAACCAGATGGTGGTCAAGCCGT
CTCAGTCGAGTTTGATCCGACGTCTCTCCGGGGGCATCCCTGGTGCTTTC
AACACGATTGATGTGAGCCCTGCATCGTCGAAGAAAGAGCTTGGAGGGGT
TGTTTCTACAGAGGAGTGCCAAACTCTAGCTGATTATCTCACCCCATCTG
TAGGAGGCCTGTATCTTCTACCTGGAGCGTGCTCAGCTATGCTCAAAGCA
GACGAAGCCAGACTAGCAGAGCAATTTGAGAAGGAGAACGCCAAGGTTTA
TGATCGTCTCAAGCGTCGTAATTCCATGGTGGAGCAACAGGGTTACCCGC
CCACCATGTGTTAA
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