mRNA_C-tenellus_contig7740.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7740.1.1
Unique NamemRNA_C-tenellus_contig7740.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7740.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7740contigC-tenellus_contig7740:2619..4931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size283
Hectar predicted targeting categoryother localisation
Exons3
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790055.2090988-CDS-C-tenellus_contig7740:2618..26991680790055.2090988-CDS-C-tenellus_contig7740:2618..2699Choristocarpus tenellus KU2346CDSC-tenellus_contig7740 2619..2699 -
1680790055.220999-CDS-C-tenellus_contig7740:4062..41311680790055.220999-CDS-C-tenellus_contig7740:4062..4131Choristocarpus tenellus KU2346CDSC-tenellus_contig7740 4063..4131 -
1680790055.2326467-CDS-C-tenellus_contig7740:4799..49311680790055.2326467-CDS-C-tenellus_contig7740:4799..4931Choristocarpus tenellus KU2346CDSC-tenellus_contig7740 4800..4931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7740.1.1prot_C-tenellus_contig7740.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7740 2619..4931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7740.1.1

>prot_C-tenellus_contig7740.1.1 ID=prot_C-tenellus_contig7740.1.1|Name=mRNA_C-tenellus_contig7740.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=94bp
ACTSNTVDKARDEETSSVPPKNASQGCVSSSSPMTLQHFKGDKKIINLIR
ERDNLSMEITEVLDFAEECVERVDMLREAVGTTASVEDQVGFC*
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mRNA from alignment at C-tenellus_contig7740:2619..4931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7740.1.1 ID=mRNA_C-tenellus_contig7740.1.1|Name=mRNA_C-tenellus_contig7740.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2313bp|location=Sequence derived from alignment at C-tenellus_contig7740:2619..4931- (Choristocarpus tenellus KU2346)
GCTTGCACAAGCAATACTGTGGATAAGGCAAGGGACGAGGAGACCAGCAG
CGTGCCACCAAAGAATGCAAGTCAGGGGTGCGTCAGTTCATCCTCTCCCA
TGACTCTACAGCACTTCAAGGGGGACAAGAAGGTACAGCTTCTTGAGGGT
TTCAACTTAGAGCTGTGTATAATGGGCTGTCCATTGAACGGTGGTTCAAT
GACTTGTCACTAATTGCCAGGTAGGTGTTTTCGTCTCTTCAGCTCATGTA
GTAGGGTGCTTGTCTACCATACATCCCCATTCTCTGTGATAGATCTGCCA
GTGCAAAGGACAGCATCCTGGCAGTTTCTGGAGTAACCTAATGGTGCATT
CTGTAGACAAACTGATTATGATACTCTTATCTGAATTGGTAGCTCGTCTT
ATCTGCATCAATGAAAAGAGAGACCCAACTAGTGGTTCATACGCAGAAAC
CATACAGACAAAAAATCGTGTAATATTCACATCCCTAGCATGGTGAGCAC
ATCATTTTGCACTTACTTAATTCTGACTCTAGAGTACTTGAAAGTCGAGG
CAGCATGAGCCCAGTAAAATGTCGTTGTGCTTGTTGTGGGAGATCTTTGT
ACTGTTGATTCTGAAAAGTTCTCACATTTAGCAATTCCTGGAGTATAACA
AAGTCCTCCTTCTCTGTGAAAAAAGCCAGCCAACGCTGCAATTCAGTGAC
AGGTAACAATGCATCTCTGTTCCATTTTCACCTCGGTGAGAATGGTACAA
TTATATGAGCTTCGGTCTGTTTTCTGACCAACAGACTTTCCTGCCATCAG
ATCATCAACCTAATAAGAGAGCGGGACAATCTAAGCATGGAAATCACAGA
AGTGCTTGACTTTGCTGAGGTACGTGCATATCATTTCTCGCCATCCACTA
AGTGATAGTTCAATTCTATTTTGTGTTTGAGGTTGTCTATGTTTGGGTCG
ACATTTGCTGCAGATAGCAATCAAAGGAAAGGTGTATTGGAACGTTTTTC
TACGGCCAGTATATTGTCAGTGGGTAAACGACAAGAAAGATTAACACGCG
CACCATCCAAGAGTAGCATCCTGTTTTATGCAGTTTTTAATTATGTTGAG
TCTTTTTTCGCATCTCATTTATACTTCGACGGATATTAATTTGTTTGGTC
TCGGAAGTGCTGTGTGACATTACGAGAAACCCTAACCCTAACCCTACGAG
AGTAGAGTCGTTTTGACCAAGAATAACCGAGATATCCAAGGGCAACCCCT
TACGTCATCAGCACCCCTCGACCATAAGAAGCGTTTTTGAGCATGTACTA
TGTAGTCACTCCTTAGTGTGTATGCTGGATGTATTGGCCTCAGTGACACT
GCTGGTGCCACTGGTATTGCTGATGTTAGGAGAGTGAATTGCGTTGTCAA
TCACAACCATGTTTAATACCCCCTACTACTGGAGTTTGCTCCGGTTGAAC
TTGAAGGGATTTCTACAGCAAGAATACGTGCAGTAGTGGTACAGGAATAG
AGCCGGTATATGGGTGGCACAAAAATGCACTCTTTCAGCGGCCTTCATTA
CTCATATGCCACACCTCCATATCTGAGGAGTATGATATGTGTAAAACCCC
TATTTTTGTTTCTTTTTCTACCTCAAATAGTACTCACATCAGAAAAAACC
CAGTGGGGAACGCCTTCCGTCCCCCAGGACAGTTGATCGAATTTGGCCCA
TGGTTTCCGTTGTCGAGACAGCACTCATGAAATTTGCTGCGTAATGTCTG
TTTCAGGACAACTCTTGACCTCATTTCCTCCACTGTGTCTGTTGTACAGT
GTAACACTAGGAGCCTATTGTCTTTAATGTCTGTTGCCCAGAGTAATGGC
TGGGGACATTGCTGTGTATCGTTTGTTGTCAGGATACCACTTGCTTCACA
ATATCTGCTGTCTGAACAGTGCTCTGTGGTGTACTTCAAGTATAACGCTA
TAACACAAAGTCTTATGTTATACAGGTGATCTGCATAAATAGTCCAACAA
GGTACGAAACAATAGATATACACATCTACTCTTTTGTATCTACCTCTTCC
TTGTGCAAATTACAGGCTACTGTGGAGATATCAGTAATTCCTTCAGATTC
CCAGGAATAGTCCTTTGAATGATTGAAAAAATGCAGTAACTACGACATAG
GTGTGGAATGTGTACTTTCCTCAACACGCACAGAGTGTGCTTGCCTCACC
TGATATATCCCATGCACTGTGTATCAATCCAGGAATGCGTGGAAAGAGTG
GACATGTTGAGGGAGGCAGTTGGCACAACTGCATCAGTGGAAGACCAGGT
GGGGTTTTGTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7740:2619..4931-

>mRNA_C-tenellus_contig7740.1.1 ID=mRNA_C-tenellus_contig7740.1.1|Name=mRNA_C-tenellus_contig7740.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=282bp|location=Sequence derived from alignment at C-tenellus_contig7740:2619..4931- (Choristocarpus tenellus KU2346)
GCTTGCACAAGCAATACTGTGGATAAGGCAAGGGACGAGGAGACCAGCAG
CGTGCCACCAAAGAATGCAAGTCAGGGGTGCGTCAGTTCATCCTCTCCCA
TGACTCTACAGCACTTCAAGGGGGACAAGAAGATCATCAACCTAATAAGA
GAGCGGGACAATCTAAGCATGGAAATCACAGAAGTGCTTGACTTTGCTGA
GGAATGCGTGGAAAGAGTGGACATGTTGAGGGAGGCAGTTGGCACAACTG
CATCAGTGGAAGACCAGGTGGGGTTTTGTTAG
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