mRNA_C-tenellus_contig77.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig77.3.1
Unique NamemRNA_C-tenellus_contig77.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A6H5JV48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV48_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.260e-39
Identity = 113/318 (35.53%), Postives = 153/318 (48.11%), Query Frame = 1
Query:  574 DDLSELSPKK---RQVQWGGDGSTDWVGEAEPKHT------------------------LKECRAAAGG--------------SGSRPNLMDEGRRDVHLLSYLQLPDFVPLNLWLKEEF--------GNDSCGVKQVPVGTTEASAQMWWGLVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEMWCCYLLRRGHWGGTSI--HDFLLEVAKARSAEALKAILVVDVEGVKL-DVELVGRMLSTYSFERPDCFEILDELG 1371
            DD S   P+     Q++WGGDG+T W G AEPK +                        L    AA+GG               G R  +  +  R + L SYL LPD++PL++W   EF        G D     +  V      A +W  L+ MF  ++RGVEH+H  G+VHNN++P S+WV+ +  C +G +SQVT PG  +          Y SPE + G  VDSHSDV++LG+L+ + W  Y+L RG  G   +     L+E  K+    A         EG  L D  LVG ML+   F+RPDCFEI D LG
Sbjct:  259 DDASTAPPQHGGLEQLRWGGDGTTGWKGTAEPKPSADKTTSCTGCTSSPLPTGQPRPMSLNSAAAASGGYYCGCCGSETRGTGHGGREIVRRQRERTLCLTSYLLLPDWLPLSVWFDTEFEPQTAAPEGQDGAATARA-VTAPHDWALVWRHLMSMFEGVLRGVEHVHTKGLVHNNIHPCSLWVAADGRCCVGNLSQVTPPGCRKG---APEHHHYASPERRRGDVVDSHSDVYALGVLMLDFWRHYILSRG-LGEVCLTGEGGLVERVKSGEGRAPHP-----EEGADLLDCVLVGSMLAEDPFDRPDCFEIEDRLG 566          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: D7G871_ECTSI (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G871_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 8.320e-35
Identity = 104/279 (37.28%), Postives = 136/279 (48.75%), Query Frame = 1
Query:  574 DDLSELSPKK---RQVQWGGDGSTDWVGEAEPKHTLKECRAAAGGSGSRPNLMDEGRRDVHLLSYLQLPDFVPLNLWLKEEFGNDSCGVKQVPVGTTEASAQMWWGLVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPGHLRTPIMVTNRVPYH----SPEHQHGQGVDSHSDVFSLGILLTEMWCCYLLRRGHWGGTSIHDFLLE-----VAKARSAEALKAILVVDVEGVKL-DVELVGRMLSTYSFERPDCFEILDELG 1371
            DD S   P+     Q++WGGDG+T W G AEPK +  E  +  G + S              L   Q P  + LN       G D     +  V      A +W  L+ MF  ++RGVEHLH  G+VHNN++P S+WV+ +  C +G +SQVT PG            P H    SPE + G  VDSHSDV++LG+L+ E W  Y+L RG      + +  L      V + +S E          EG  L D  LVG ML+   FERPDCFEI D LG
Sbjct:  173 DDASTAPPQHGGLEQLRWGGDGTTGWKGTAEPKPSTDETTSCTGCTSSP-------------LPTAQ-PRPISLNSAAAASEGQDGATTTRA-VTAPHDWALVWRHLMSMFKGVLRGVEHLHTKGLVHNNIHPCSLWVAADGRCCVGNLSQVTPPG-------CRKGAPEHHHFASPERRRGDVVDSHSDVYALGVLMLEFWRHYILSRG------LSEVCLTGEGGLVERVKSGEEKTPH---PEEGAGLLDCTLVGSMLAEDPFERPDCFEIEDRLG 420          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A3A0BRK7_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0BRK7_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.440e-6
Identity = 30/93 (32.26%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  883 LVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHL--GGMSQVTCPGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEM 1155
            +VD+ +QI RG+E  H  G +H ++ P++V ++   E  +   G++++    H      ++  V Y SPE   GQ +D  +D++SLG++L EM
Sbjct:  113 VVDIAMQIARGLERAHEAGFIHRDIKPSNVIITTRGEVKIIDFGLAKLAGQMHFTKTGNLSGTVAYMSPEQVQGQAIDHRTDIWSLGVVLYEM 205          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A6A0HX03_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A6A0HX03_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-6
Identity = 30/93 (32.26%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  883 LVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHL--GGMSQVTCPGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEM 1155
            +VD+ +QI RG+E  H  G++H ++ P++V ++   E  +   G++++    H      ++  V Y SPE   GQ +D  +D++SLG++L EM
Sbjct:  113 VVDIAMQIARGLERAHEAGIIHRDIKPSNVIITTRGEVKIIDFGLAKLAGQMHFTKTGNLSGTVAYMSPEQVQGQAIDHRTDIWSLGVVLYEM 205          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A6G0XH53_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XH53_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-6
Identity = 63/277 (22.74%), Postives = 111/277 (40.07%), Query Frame = 1
Query:  349 LRELMLREARLLSSVPHYCILPLRCAWLEQRTVETNAEQSALFLPKEEYADVALDHCVPWT----VSGEDNTWEEQTSDDDLSELSPKKRQVQWGGDGSTDWVGEAEPKHTLKECRAAAGGSGSRPNLMDEGRRDVHLLSYLQLPDFVPLNL--WLKEEFGNDSCGVKQVPVGTTEASAQMWWGLVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEMWC 1161
            +R+ MLREA++L+S+ H  +      W+  + V  N+      LP         D     T    +S  D+   ++ S  D S  S          D S  +  +     T  E +A        P    + +  + +  Y+Q+  +   +L  WL +         K +   T  A          +F QIV G++++H  G++H ++ P +++++L+    +G     T   H            Y SPE   G      +DVFSLG++L E++C
Sbjct:  115 IRDTMLREAQVLASLDHENVCRYYHTWIFGKLVSANSN-----LPPASAVSSTADADNSSTGRRIISSNDDKDSKERSSSDSSLFSEVD-------DDSFGFEFDRNALSTDNESQADIARKAMSPATRQKSQLCLQMDVYIQMALYHGNSLQHWLNDR--------KVIDTATNIA----------IFRQIVAGLKYIHAQGLIHRDIKPANIFLTLDACVKIGDFGLATHMTHSSAAAAGIGTPLYSSPEQLRGDVCTPAADVFSLGLVLCELFC 361          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: UPI00067AEF37 (eukaryotic translation initiation factor 2-alpha kinase 1-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067AEF37)

HSP 1 Score: 62.0 bits (149), Expect = 1.790e-6
Identity = 46/169 (27.22%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  883 LVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSL-ERECH-LGGMSQVTCPGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEMWCCYLLRRGHWGGTSIHDFLLEVAKARSAEALK-----AILVVDVEGVKLDVELVGRMLSTYSFERPDCFEILDEL 1368
            L+DMF Q+VRG+ ++H  G++H+++ P++V+V   + EC  L G   + CP       +      Y +PE   GQ  +  SD++SLGI+L EM               +  F  ++ + ++ EAL+     A L  +   +     ++G+++     +R D  ++L+EL
Sbjct:  390 LIDMFTQLVRGLNYIHARGVIHHDIKPSNVFVEEGDSECRVLLGDFGLACPLQQSHRGVAVGTHFYAAPEQLDGQ-CNPKSDMYSLGIILLEM---------------VQPFSTDMERVKTIEALRKGQIPANLTANYPKI---AHIIGKLVQRRPSKRLDSNQLLEEL 539          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: Q78E06_MOUSE (Protein kinase (Fragment) n=2 Tax=Mus TaxID=10088 RepID=Q78E06_MOUSE)

HSP 1 Score: 59.7 bits (143), Expect = 2.230e-6
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  883 LVDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTC---PGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEMWCCYLLRRGHWGGTSIHDFLLEVAKARSAEAL-KAILVVDVEGVKLDVELVGRMLSTYSFERPDCFEILDELGKER 1380
            ++D++ QIV GVE++H  G++H ++ P ++++  ER   +G     T     G  RT    T  + Y SPE    +      D+F+LG++L E+               +H    E  K +  E+L K     D+   K +  L+ ++LS    +RP+  EIL  L + R
Sbjct:   76 ILDLYEQIVTGVEYIHSKGLIHRDLKPGNIFLVDERHIKIGDFGLATALENDGKSRT--RRTGTLQYMSPEQLFLKHYGKEVDIFALGLILAEL---------------LHTCFTESEKIKFFESLRKGDFSNDIFDNK-EKSLLKKLLSEKPKDRPETSEILKTLAEWR 227          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A158QB13_ENTVE (Protein kinase domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A158QB13_ENTVE)

HSP 1 Score: 60.1 bits (144), Expect = 3.020e-6
Identity = 45/157 (28.66%), Postives = 74/157 (47.13%), Query Frame = 1
Query:  895 FLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPGHLRTPIMVTNRVPYH-SPEHQHGQGVDSHSDVFSLGILLTEMWCCYLLRRGHWGGTSIHDFLLEVAKARSAEALKAILVVDVEGVKLDVELVGRMLSTYSFERPDCFEILD 1362
            F+QI+RG+EH+H   ++H ++ P +V+++ +    LG +          T        PY+ SPE     G    SD++S+G LL EM     L+   +G     + L    K  + E       +  E ++   +L+ R LS    ERPD +E+LD
Sbjct:  128 FVQIIRGLEHMHSRRILHRDIKPANVFITADETVKLGDLGLGRLFSFKTTAAHSLVGTPYYMSPERIKDAGYSFKSDMWSIGCLLYEM---VALQSPFYGDKQ--NLLSLCKKIENCEYPPLPSDIYSEQIR---DLIARCLSAIDTERPDVWEVLD 276          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A6A5AT89_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AT89_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.210e-6
Identity = 28/90 (31.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  892 MFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPGHLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEMWC 1161
            +F QIV G++++H  G++H ++ P +++++L+    +G     T    L + +       Y SPE   G    + SDVFSLG++L E++C
Sbjct:  169 IFQQIVSGLKYIHGQGLIHRDIKPANIFLTLDACVKIGDFGLATDSRLLESSLAGVGTPLYSSPEQTRGDVCSTKSDVFSLGLVLCELFC 258          
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Match: A0A6N7GBG4_9ACTN (Protein kinase n=1 Tax=Micromonosporaceae bacterium TaxID=1873464 RepID=A0A6N7GBG4_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 3.930e-6
Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  886 VDMFLQIVRGVEHLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPG--HLRTPIMVTNRVPYHSPEHQHGQGVDSHSDVFSLGILLTEM 1155
            V++ L ++ GV  +H  G+VH ++ P  VW++++    LGG  ++ C G  H   P +V    PY SPE + G+ +D  SD+++ G+LL E+
Sbjct:  392 VNVGLGLLAGVAAVHARGLVHRDIRPEQVWLTVDGTVLLGGF-ELACAGVEHSVAPDLVE---PYASPEQRAGRVLDGRSDLWACGLLLVEL 479          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig77.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV48_9PHAE1.260e-3935.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G871_ECTSI8.320e-3537.28PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]
A0A3A0BRK7_9BACT1.440e-632.26Non-specific serine/threonine protein kinase (Frag... [more]
A0A6A0HX03_9BACT1.570e-632.26Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6G0XH53_9STRA1.630e-622.74Protein kinase domain-containing protein n=2 Tax=A... [more]
UPI00067AEF371.790e-627.22eukaryotic translation initiation factor 2-alpha k... [more]
Q78E06_MOUSE2.230e-627.65Protein kinase (Fragment) n=2 Tax=Mus TaxID=10088 ... [more]
A0A158QB13_ENTVE3.020e-628.66Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6A5AT89_9STRA3.210e-631.11Protein kinase domain-containing protein (Fragment... [more]
A0A6N7GBG4_9ACTN3.930e-634.78Protein kinase n=1 Tax=Micromonosporaceae bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig77contigC-tenellus_contig77:12487..14401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog8364.ENSXETP00000019788
Preferred nameEIF2AK2
PFAMsPkinase,dsrm
Model size1587
Max annot lvl33208|Metazoa
KEGG koko:K16195
KEGG Pathwayko04141,ko04217,ko05160,ko05162,ko05164,ko05165,ko05167,ko05168,ko05169,ko05203,map04141,map04217,map05160,map05162,map05164,map05165,map05167,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000186,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002237,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004672,GO:0004674,GO:0004694,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006446,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007584,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009612,GO:0009615,GO:0009617,GO:0009628,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0010921,GO:0010941,GO:0010942,GO:0010998,GO:0014070,GO:0016032,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017148,GO:0019048,GO:0019049,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0020012,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0030682,GO:0030683,GO:0030968,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032496,GO:0032642,GO:0032722,GO:0032872,GO:0032874,GO:0032991,GO:0033197,GO:0033273,GO:0033554,GO:0033674,GO:0033688,GO:0033689,GO:0033993,GO:0034097,GO:0034198,GO:0034248,GO:0034249,GO:0034620,GO:0034641,GO:0034645,GO:0034976,GO:0035303,GO:0035304,GO:0035455,GO:0035821,GO:0035966,GO:0035967,GO:0036211,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042594,GO:0042802,GO:0042981,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043330,GO:0043331,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043555,GO:0043558,GO:0043603,GO:0043604,GO:0043666,GO:0043900,GO:0043901,GO:0043903,GO:0044003,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045069,GO:0045071,GO:0045182,GO:0045595,GO:0045859,GO:0045860,GO:0045937,GO:0046777,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048583,GO:0048584,GO:0050690,GO:0050789,GO:0050790,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051336,GO:0051338,GO:0051347,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051817,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0070302,GO:0070304,GO:0070887,GO:0071310,GO:0071496,GO:0071704,GO:0071900,GO:0071902,GO:0072091,GO:0075136,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0098772,GO:0140096,GO:1900225,GO:1901222,GO:1901224,GO:1901363,GO:1901532,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1902033,GO:1902036,GO:1902531,GO:1902533,GO:1903506,GO:1903706,GO:1903900,GO:1903901,GO:1990904,GO:1990928,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2001141
Exons3
Evalue1.66e-08
EggNOG OGsKOG1033@1|root,KOG1033@2759|Eukaryota,38F0X@33154|Opisthokonta,3BJRI@33208|Metazoa,3D2ZQ@33213|Bilateria,489PA@7711|Chordata,490IJ@7742|Vertebrata
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-12_001250.1
EC2.7.11.1
Descriptionregulation of hematopoietic stem cell proliferation
Cds size1374
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790052.7096555-UTR-C-tenellus_contig77:12486..125071680790052.7096555-UTR-C-tenellus_contig77:12486..12507Choristocarpus tenellus KU2346UTRC-tenellus_contig77 12487..12507 +
1680790052.7650523-UTR-C-tenellus_contig77:14209..144011680790052.7650523-UTR-C-tenellus_contig77:14209..14401Choristocarpus tenellus KU2346UTRC-tenellus_contig77 14210..14401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790052.724355-CDS-C-tenellus_contig77:12507..127911680790052.724355-CDS-C-tenellus_contig77:12507..12791Choristocarpus tenellus KU2346CDSC-tenellus_contig77 12508..12791 +
1680790052.7336736-CDS-C-tenellus_contig77:12962..136321680790052.7336736-CDS-C-tenellus_contig77:12962..13632Choristocarpus tenellus KU2346CDSC-tenellus_contig77 12963..13632 +
1680790052.7508671-CDS-C-tenellus_contig77:13789..142091680790052.7508671-CDS-C-tenellus_contig77:13789..14209Choristocarpus tenellus KU2346CDSC-tenellus_contig77 13790..14209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig77.3.1prot_C-tenellus_contig77.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig77 12508..14209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig77.3.1

>prot_C-tenellus_contig77.3.1 ID=prot_C-tenellus_contig77.3.1|Name=mRNA_C-tenellus_contig77.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=458bp
MGEDLPSQPLNNFWSVVLSREGNIVSDEPRQNCRGTNGGLTAGSGNLWED
ELHLSSRAACDFTPLEVLDCSEPRCRYLRVEHIQDGTRHILRELRLVMPE
SSAVPQIDRLRELMLREARLLSSVPHYCILPLRCAWLEQRTVETNAEQSA
LFLPKEEYADVALDHCVPWTVSGEDNTWEEQTSDDDLSELSPKKRQVQWG
GDGSTDWVGEAEPKHTLKECRAAAGGSGSRPNLMDEGRRDVHLLSYLQLP
DFVPLNLWLKEEFGNDSCGVKQVPVGTTEASAQMWWGLVDMFLQIVRGVE
HLHINGMVHNNVNPNSVWVSLERECHLGGMSQVTCPGHLRTPIMVTNRVP
YHSPEHQHGQGVDSHSDVFSLGILLTEMWCCYLLRRGHWGGTSIHDFLLE
VAKARSAEALKAILVVDVEGVKLDVELVGRMLSTYSFERPDCFEILDELG
KERIDVH*
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mRNA from alignment at C-tenellus_contig77:12487..14401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig77.3.1 ID=mRNA_C-tenellus_contig77.3.1|Name=mRNA_C-tenellus_contig77.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1915bp|location=Sequence derived from alignment at C-tenellus_contig77:12487..14401+ (Choristocarpus tenellus KU2346)
GTACAACAATCACATCCAACTATGGGAGAGGACTTGCCTTCACAGCCATT GAACAACTTTTGGTCTGTGGTTCTGTCCAGAGAAGGGAACATCGTCTCTG ACGAGCCAAGACAGAATTGCCGTGGCACAAACGGAGGTTTAACGGCTGGA AGCGGGAATTTATGGGAAGACGAACTGCATCTCTCTTCTCGAGCAGCATG CGACTTCACCCCATTGGAAGTCCTCGACTGCAGCGAACCCCGCTGTCGAT ACTTAAGAGTGGAGCATATACAAGATGGAACGCGTCATATTCTCCGAGAG CTGAGGTTTGTGCTCGTGTACGAGCACTATCGGTGTTTGTTGAGACCTGT TCCTCAATTGTCCCGTCCTAATATGTTCTCGACGAGACCCGAGGAGTGAC CTTTATTACCAAGTCCCCAGGTTTTGGCACCTCATAGGAAAATGATGAGT ACCTTACCTCCCCGGTCCGCCCACAGGCTGGTAATGCCGGAGTCCTCTGC TGTGCCTCAGATCGACCGTCTACGGGAGCTGATGCTCCGTGAAGCACGCC TTCTGTCGTCTGTACCACACTACTGTATCCTTCCTTTGCGATGTGCATGG CTGGAACAGCGAACTGTAGAGACAAACGCTGAGCAATCTGCATTATTTCT CCCAAAGGAAGAATACGCTGATGTAGCGCTTGACCACTGTGTCCCATGGA CAGTGTCAGGTGAAGACAACACCTGGGAAGAGCAAACAAGTGACGATGAC TTGAGCGAGCTTAGTCCAAAGAAAAGACAAGTTCAATGGGGTGGGGATGG CTCCACTGACTGGGTGGGAGAAGCCGAGCCGAAACATACACTTAAGGAGT GCAGAGCTGCCGCGGGGGGCAGTGGGTCGAGGCCTAACTTGATGGATGAA GGACGGAGGGACGTTCACCTATTGTCTTACCTTCAGCTGCCCGACTTCGT TCCTTTGAATCTGTGGCTCAAAGAGGAATTCGGTAATGATTCCTGTGGTG TGAAACAGGTTCCCGTAGGAACGACGGAGGCCTCGGCCCAAATGTGGTGG GGGCTGGTGGACATGTTTCTTCAGATCGTAAGAGGTGTGGAGCATTTACA CATCAATGGGATGGTGCATAACAATGTTAATCCCAACAGCGTTTGGGTGA GTAAAAGAAAATCCCTTAATGCGTGCAAAACCATTACAGGATAGGTGTTA CTGGCACATGCAGCTGAAATGAAGGACCACTTGCATATTAACCAAGCCCG CTGTCACCTGTCATCTCTCTTCCCTACTGCCACATTTCCACCTCTCACCA CAGGTAAGCTTGGAGCGAGAATGCCATCTTGGAGGGATGAGTCAGGTTAC CTGTCCAGGCCATCTCCGGACACCGATAATGGTGACCAACAGAGTCCCAT ACCACAGTCCAGAACACCAGCACGGACAGGGGGTAGACTCGCACTCAGAT GTCTTTTCCTTGGGGATACTCCTAACGGAGATGTGGTGCTGTTACCTTTT GCGCAGGGGTCATTGGGGTGGGACATCAATCCATGATTTTTTACTGGAGG TGGCGAAGGCAAGAAGTGCAGAGGCTTTGAAGGCAATCCTTGTGGTCGAT GTGGAGGGGGTGAAGCTTGATGTGGAGCTGGTGGGGAGGATGTTATCCAC TTATTCCTTTGAGCGTCCAGACTGCTTTGAAATTCTTGATGAATTGGGGA AGGAGAGAATTGATGTGCATTAGTGGTAGGAGAAGAGTTTGTACTGGAGA TTATGATACATCACTTTAAATTGTTGTGAGTGGATGTCTAGGGTGTGGTG CGTATTTTCTTATACAAGTCCTCAGAGTGATACGTTTTAGTATCTAATGT GGAAATATGATGTTATTAGATGCTTTTCTACAATGAATTCTAATATACAT GGTCTATGAACAGTC
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Coding sequence (CDS) from alignment at C-tenellus_contig77:12487..14401+

>mRNA_C-tenellus_contig77.3.1 ID=mRNA_C-tenellus_contig77.3.1|Name=mRNA_C-tenellus_contig77.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1374bp|location=Sequence derived from alignment at C-tenellus_contig77:12487..14401+ (Choristocarpus tenellus KU2346)
ATGGGAGAGGACTTGCCTTCACAGCCATTGAACAACTTTTGGTCTGTGGT
TCTGTCCAGAGAAGGGAACATCGTCTCTGACGAGCCAAGACAGAATTGCC
GTGGCACAAACGGAGGTTTAACGGCTGGAAGCGGGAATTTATGGGAAGAC
GAACTGCATCTCTCTTCTCGAGCAGCATGCGACTTCACCCCATTGGAAGT
CCTCGACTGCAGCGAACCCCGCTGTCGATACTTAAGAGTGGAGCATATAC
AAGATGGAACGCGTCATATTCTCCGAGAGCTGAGGCTGGTAATGCCGGAG
TCCTCTGCTGTGCCTCAGATCGACCGTCTACGGGAGCTGATGCTCCGTGA
AGCACGCCTTCTGTCGTCTGTACCACACTACTGTATCCTTCCTTTGCGAT
GTGCATGGCTGGAACAGCGAACTGTAGAGACAAACGCTGAGCAATCTGCA
TTATTTCTCCCAAAGGAAGAATACGCTGATGTAGCGCTTGACCACTGTGT
CCCATGGACAGTGTCAGGTGAAGACAACACCTGGGAAGAGCAAACAAGTG
ACGATGACTTGAGCGAGCTTAGTCCAAAGAAAAGACAAGTTCAATGGGGT
GGGGATGGCTCCACTGACTGGGTGGGAGAAGCCGAGCCGAAACATACACT
TAAGGAGTGCAGAGCTGCCGCGGGGGGCAGTGGGTCGAGGCCTAACTTGA
TGGATGAAGGACGGAGGGACGTTCACCTATTGTCTTACCTTCAGCTGCCC
GACTTCGTTCCTTTGAATCTGTGGCTCAAAGAGGAATTCGGTAATGATTC
CTGTGGTGTGAAACAGGTTCCCGTAGGAACGACGGAGGCCTCGGCCCAAA
TGTGGTGGGGGCTGGTGGACATGTTTCTTCAGATCGTAAGAGGTGTGGAG
CATTTACACATCAATGGGATGGTGCATAACAATGTTAATCCCAACAGCGT
TTGGGTAAGCTTGGAGCGAGAATGCCATCTTGGAGGGATGAGTCAGGTTA
CCTGTCCAGGCCATCTCCGGACACCGATAATGGTGACCAACAGAGTCCCA
TACCACAGTCCAGAACACCAGCACGGACAGGGGGTAGACTCGCACTCAGA
TGTCTTTTCCTTGGGGATACTCCTAACGGAGATGTGGTGCTGTTACCTTT
TGCGCAGGGGTCATTGGGGTGGGACATCAATCCATGATTTTTTACTGGAG
GTGGCGAAGGCAAGAAGTGCAGAGGCTTTGAAGGCAATCCTTGTGGTCGA
TGTGGAGGGGGTGAAGCTTGATGTGGAGCTGGTGGGGAGGATGTTATCCA
CTTATTCCTTTGAGCGTCCAGACTGCTTTGAAATTCTTGATGAATTGGGG
AAGGAGAGAATTGATGTGCATTAG
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