mRNA_C-tenellus_contig7694.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7694.1.1
Unique NamemRNA_C-tenellus_contig7694.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig7694.1.1 vs. uniprot
Match: A0A6H5KY01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY01_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.530e-19
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 3 
Query:  114 DFGVMSCYRGFVISCMEDDWLTDTLSDDEVGLPEGHDLAMDDGEVDLGESMDAMEKEENKWTELGIDAL-QREGQAPSSSS 353
            DFG +S Y GF +   ++ W T  LSDDE+ LPEGHD+ +DDGEVDLGES++A E+EE KWT+ GID L QREG AP++++
Sbjct:    5 DFGAVSLYAGF-LDITDEAWTTADLSDDEIDLPEGHDVVVDDGEVDLGESIEAAEQEELKWTDKGIDLLLQREGGAPTANT 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7694.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY01_9PHAE2.530e-1958.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7694contigC-tenellus_contig7694:86..6359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI57303
Model size3094
Max annot lvl4776|Peronosporales
KEGG koko:K12456
KEGG Pathwayko04110,ko04114,ko04120,ko04914,map04110,map04114,map04120,map04914
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000129
EggNOG OGs2CRB3@1|root,2R7IW@2759|Eukaryota,3QGI8@4776|Peronosporales
Cds size315
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790052.3650398-UTR-C-tenellus_contig7694:85..28231680790052.3650398-UTR-C-tenellus_contig7694:85..2823Choristocarpus tenellus KU2346UTRC-tenellus_contig7694 86..2823 -
1680790052.4151783-UTR-C-tenellus_contig7694:6318..63591680790052.4151783-UTR-C-tenellus_contig7694:6318..6359Choristocarpus tenellus KU2346UTRC-tenellus_contig7694 6319..6359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790052.3761492-CDS-C-tenellus_contig7694:2823..29811680790052.3761492-CDS-C-tenellus_contig7694:2823..2981Choristocarpus tenellus KU2346CDSC-tenellus_contig7694 2824..2981 -
1680790052.3849895-CDS-C-tenellus_contig7694:3742..38571680790052.3849895-CDS-C-tenellus_contig7694:3742..3857Choristocarpus tenellus KU2346CDSC-tenellus_contig7694 3743..3857 -
1680790052.3960512-CDS-C-tenellus_contig7694:6276..63181680790052.3960512-CDS-C-tenellus_contig7694:6276..6318Choristocarpus tenellus KU2346CDSC-tenellus_contig7694 6277..6318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7694.1.1prot_C-tenellus_contig7694.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7694 2824..6318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7694.1.1

>prot_C-tenellus_contig7694.1.1 ID=prot_C-tenellus_contig7694.1.1|Name=mRNA_C-tenellus_contig7694.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
MRGVDWLTSEEQVWDSDYGSVKRVDFGVMSCYRGFVISCMEDDWLTDTLS
DDEVGLPEGHDLAMDDGEVDLGESMDAMEKEENKWTELGIDALQREGQAP
SSSS*
back to top

mRNA from alignment at C-tenellus_contig7694:86..6359-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7694.1.1 ID=mRNA_C-tenellus_contig7694.1.1|Name=mRNA_C-tenellus_contig7694.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6274bp|location=Sequence derived from alignment at C-tenellus_contig7694:86..6359- (Choristocarpus tenellus KU2346)
CAGTGATAGATCAAACCGGAAGAAGCACAAGAAGAAGAGGGATGAGAGGC
GTTGATTGGCTCACCAGTGAGGAACAAGTGTGGGTCAGTGGAAGTTCTTT
GTTGTGAGGTTTTCCCTTGAGATGATGAATTCGTCTAAAGGGGGGGGAGG
GAAGGAGTGGTTTGTTGAACTTGAAGATTGTGTATGGAGATGACTTTGCA
CATGCTGTGGTTCCCCCTTTTCTCCTTTTAACATTGTATGGTACTTTTGT
ACTTGGTCTATTGTCGTTTTTGTTTCGGTACAGGTTTTCAGTGATTCAGA
ACTTATTTTGTTCTCATCTGCCATTGTTTGAGGGTGTGACTCTTGATGTA
GGTTGCGCGCGGTGAAATGTTCTATAGGAAGGAGGATGCAGTGAATGAGG
TTACACATTTTAAGTTCAAATTGGGCAGTACTCTTTGGTGTGTTCCTATT
GGAGGGGGTATGTGTAGCAGAATGGATGGTGGGTGACATGTCACGTGGAT
AGCTGACAAGAGAGGAGAATGGTTTGATGGTGAAGCACACAATTTTGAAG
TTGTGAGCCTAGCTAGGAACTTGTAGTGGTGTGAATCGTTTTGATTGGTA
ATATTTAGTGTAATCCTGAATACCTAACCTTCAGACTGATGATGTGCGAG
ATTTATGTTGTGTGAGTGGTGGGAAATGAGAAACGAGGAAAGAAGGGACT
GCCAATATTGGCAAGAATCGTATGGTTTGTTTGGGACATGCAAAGTGGTA
AGACTTGATGCATATTAATAAAATGATCGGTAAATGAGGTCGCATTTGCG
GCAGAGGAAGAAGTCCAGGAACAGTGAGCGCCCATGATGAACAGTGCTGA
ATCGTCACCTTGAAAGGCTAAGAATGTAGTATGTTCTTGTTAGGCTGGTT
GGGTTTTGACACCAAAGTGAGTGGTCACGCTGTTGGAGATAATAATATTA
GTTTGCCATTTTTGGTAAGGTGGCATACAGGGGGAACACACGTATATTGT
ACTATTTATTTATGGTACTTTTGTACTTTTACATGTCTATGATAACTATG
AGTATAGGAAGTTGGAATTTTATAATCAATCGCTCTTGTGCTGATGGTAA
GAGAGTCGTGTATGATGATCTTGCAAATGAGGAATAATTTGTCGTAGACG
GCCAGAAGAAGCAGCAACAGAAAGAATAAACTATACCATCACCTGAAAAG
GACAAAATGTAGACCCTCTTTTTGAGCCAAAAAACTTAAGGGGTAGGGCC
GTGTCCATTTGGGGGCCAAAACCCAATGTTGCGATTTCGATGTAATTTTG
GCTGTCGTGTTTGTTAGGAAGTGTTAATACCCTTGCTCCAGACACACTTT
TTCATAACGTTTACATTTTACCTATCCGAAATATTTTGGAGTAAGAAAAT
GTCATGAAAACCCTGAGGGAAGCCAAGCCTCAAATGGACAAACAGGGCAG
AACTCGTACCCCCTAAGATACCTTCACTCTTTGCACTCACCTGACTGCAA
AAAAAATTGAAGAACTGCACTTTCTATCACTCACTAGTAGGCTACCCCTG
AGCTATGAGGACACATGTGAGGGTGAAATACCCTACCTTTTTGGTGCTTT
GAGTTAGGGAAGCAGCATCTTTCAGATCCCGTCGCGATGTAGAATTGGTG
GTGAATGTCATGTGGATAACCACCATGACAAGACTATCGCCATGGAACTA
TCGAAAGAAGATTTTTCCAATAAGATCGTCTCAACACACACATTTAGTTG
GAGTATTTATTGGTGATGACAGTATTGAGTAGAGGTTCCCTCCTTGACTG
AATGCCAACCACAGAGTAAACTCTCTTTTGCAATAGCATCGTGGCCTCAA
AAGCCTTGTTGTACTGTTCCAGTCATGCTAGTATTATAATAACATCAATA
CTTGTGGCTGGTAGATCAGATTCAGGAAGTTTTAAAATCTCCTATCATTA
ACAATCTCATCAATCTGTGTCCTTCACATCCCAACAGTGGACCATCTCCT
AGTTATAATAAGAAGATCAGGTCTACTGTGTTCTTCCACACAGACAGGGC
GTACTCCATCTGACCTGGGCCACAGAGCCAGTATCTCTTCTACAGTGTTG
GACGAAAATATGTATGGAAGAATCCCAAGAATCATTTAGGTTACGAAATG
CAAAACCATATTCATGAAAAGAAATCTGATTATGGGGTTTGAACCATCGT
TGTTTGTGTAGGAGAACTAACTCCAAAGAAAAAAACGTTTTCGATGAGTC
GTTTAAAGACTAGGTCAAAAGCCAAAAATATTTGCCCTACACCTCTCTAA
CCTCTCAAAACGCGAAGTTACCAGTGGCGATGTCGGTAAGTAATCCTTGA
TTCCTGACTTGCAGTTGGGGCAAGCGCAATTGTATTAGGGTTGTACATAA
TTCATAATACCGCTGCCTCGGCTATTCTCAACAGCTTACTTGATGAAAAT
GTTGACACCAAACTCCACTACTACTGGTGCACACGCCATTTCCAATCCGC
AGGACAGCGATTACGGTTCCGTCAAGCGTGTCGATTTTGGGGTAATGTCA
TGTTACCGAGGTTTTGTCATTAGCTGCATGGAGGATGACTGGCTAACAGA
CACGCTCTCGGATGATGGTGAGAGGACGTTTGTTGGCCGATCACTTGAGA
AAGGATAATTTTACATCAACATTCCACTAAGCCTTGGATAGTCAAAAGAT
GCTACCCGCTTTTCGATCCATTAACTCATCCCCTTTCCTGGCAAAGACAC
TGGCTCATGCGAAATAGCAGTCCCTTGTTTTTGCTGACTAGGCCTATAGA
ACATCACACAAGGGCTATTACCCCAAGTAAGGTAATATTTTTTCCACACT
CTCACCTCCATTAAAAGACGATTTATGCACTAATTAAGTGCAATGTTTGC
CTCATTGGATTTAACTACCAGATATGTCAACGTGGAAAGAACTACGGTGG
GAATTTTTTTATAATTTGAATGGTACAGGTTGGTAGGGTAAGATATTTTT
CTTAGGATGCCCTCTCCATTGAGCAGCAGTCTTCTTAGAGGTAAAGGTGA
TATCTCCATTAATCGCTTTTAATGAGTGTTTCACTTGATACGACCTCAAT
GTAAACTGATGTAGGAAGACCTGTGCTCGGGGTATGTTGAATGTGAATAA
TACAAGTCAGCAATGTAGGACCTCTTGTCCTTGGACCTCATCTCAACCTA
GTAGCAGTCTTTTGTGGCTTTTCATAGAGCTCTTCTTAGGAACGTTTGTT
TAACTATACTGGAGATGCTTCGTTGTCGTTCTAATTTCAGCGATCATAGT
GGCCCCTGGACACAACTATGTCCTTCCCCATTTGCCCAAAATTCCATTAC
ATGTATGCTCTTGGGTGGCAAATCCTAGAGGTGGGCCTTCCAGAGGGCCA
CGATCTGGCTATGGATGACGGGGAGGTAGACTTGGGAGAGTCTATGGACG
CCATGGAGAAGGAGGAGAACAAGTGGACAGAACTAGGCATTGATGCGTTG
CAGAGAGAGGGACAAGCACCCTCATCAAGTAGTTGATTGAAAACCTTATC
TACTGCTTTTTTAGTAGAGATGGGAGCAAATGCGGCGGGGTGTTAGATCA
TCTGTTATTAGTGATAGGGGAGCCAAGGAGGAGGAGAGGGGCTGTTTTGA
TACGGTTGCAAACAAGGCATGCGTGAAGGACCTGTGAAGGGGGAGCAATC
GTTGGATTTTACAGGTACGTGACATATTTTGAAGGACCTGATTTGGCCGA
ACCCTACATGATAGAACAAGTGTTGGACACAAGTGAGGCTTCAAACCTTG
AAAGTGCCTGTCTGTTAATTTAGCAATCTTGATGTTGTGATCACTTCGCA
GTGCCCGTGTAAGTAATCATCACACAACACTACTGTGAATTTATTGGATA
TTTCAGTGTAATGAGTCAGGGGTGAGAGCAGGTCAAGTTATGGGAGTGTA
TTGGAATACTTTGCGCTTTTCTTATTGGATGATCTCCAACAGAGAAGTGC
AGTGTAGTTGGCGTAAGCACTGCTATACTATGGCTTAGGAGAACCTTGAG
GCAATGCATACTCAAGCAATCCTGTCTCCTGTGCTACTTATCAATACTTG
GGCATCGCCATTGTTGTTTCATCGTTGTCACTGGTGTTGAAAAACTGTCT
CGTCTGAGACTTAGATGTTTGGCATTCGTTTTTCCAGTAGATCATAACCT
GGTTTATAGTTCATAAACCCTGTCTCCATATGGCAAGCAAGTGTGCACAG
AGATGCTCAGTGTCAACTGCCCCCTTTATTTTTTATTACTATAATTTTCT
CTTTCGCCGTTAGCAGGATCTCTGGGTAGTACAGAGTATCGCCTCCCCTT
GCCACATAAAATAGCAATGCAGTGACGTTTCATGACATCTGTTGCTCTTA
GACCATTTTGGTTTTCCCTGATGTTAATGAGGTCACATCAGAAATTCAAC
AATTCAGGCAAAAAGTTTCGAGCTTACAGTCAAGTTTTACATTATTTTTC
AATGTTGCAGAGCACTTCTGAGTGCAAGGGCAAAAGCCGATGATATCCGT
AGTAATTTTTTCTTCTGTGTATATTTTTCCCTCAAATTCTTTAGGTCAGA
GATGGATTTTGTTTTGCTGAAGTTATCTGTAATCAATCAAGTTAGGTCAA
ACCCAACTAAATAGTCAATGGAAGGAAGCGGATTAACTCAAAAATACATC
TTCGACCTTTGAGCTATGTAGCCACCGTCACAGCTTCCTTGGACCTCCAT
AACTTGATGAGAACATTCAGATATCAAGATAATAAATAATTGTGATATGC
CCATACCTATTTTGAATCAGCCACACTTGAGGTAGAATTTATTTAACTCC
CCACTGAATTGTCAATGCTCTTGAGTGACATTGATTTGGGGGGATACATT
ATGCTTTTGATTCCTTCAATATCGTTGGTGATTTTATATAAGCAAAAGTT
AAGTGGACTCTATTCTGCCTTTACTGTGTACAAACTTTGTTCCTGGGATA
CATCATTGAGCTGTTTGTTTTGTTTTTGGAAATTGGGAATCAATGGCTGG
GAAGTAAGTGGTAGGGTGATGGTGGTGAAATATGTAGACACCCCATGGAG
TGACTGGCCCTCACGCAGCATATGCACATACCAGGAAGAGGCAAGAGGCA
TTAGAATTTAGCATGTGTGGCATGATTGTTTTGGCCTTGATGCAAAAGAG
ATGGTGAAAGAGTCAACGGGAGCACCATTGGTGTTGTGGATTGCGTACCC
TTCCTTTATTCTATGATCCCTGGGGTTAAGCACCTTGCAACCAACGATAT
CGAGGCCCTCCTCCTCTTTCTCAACTCTCTGTTATGAGTGTGTACAGCAC
ATGACCACCTTGCAGCTTGAGCAGCCGGTGTGAACCACTGCCCCATGAAA
AAGTGAACTTACGTATATTACCATAGAGCCAGTAGTACAATACCATAGAA
CAGTGAGAAAATTGTTCCGTATGCAGAACGCTCAAGACTTGAAATGTTGA
GCAGACGTACAAGACAAAATAGTGTTTTACTACTATTATTCACATTTGTT
CAAGGGGTTCAAACCTGTGGCCTAAAGGCGGTCATTGGTTGAAAAACTCA
TCTCCCTTGCACCTTACACACGAATTGAGAAGCCGTAACTCAATACTTCA
AAAGAGTATGTAGTGTAATAGTACAGAATCAAGAATTGAAGGGGGAAAAG
GAGGGAGAAAACTCCATGCCGTTAAGAAGAATAGCCAAACAAAAATGTTG
AGGCATTACTTACGACCACCAGAATTTGGGGCAGAATGTCGTCTGTGTTG
TCAATAAGCTAAAGTCAACGAGAGGTACCCAGGTTTTGACTGTTTGAAAT
TTGAAGCCAGTTTTTTTAATCTTTTGCAATCCACACATATTTTCCATGGA
TAAAGTACTAACTTTGACTTGAGGACATTGATTTATCTGTTGTTTGAAAT
ATTTCGACACAATTCAGAAAATATCCTGTCCGCTTAAGTAGAAATAGACA
AACTTTACACCTATTTGTCAGCATCCTTAAAGTGCACCTCTGGGCTCCTT
TCGTTTACTTTTACTCGTTGTCGCCATCAAGGTTGAAGGAAACAGCCACA
GAAAAGGAAATGATGCAGTGCCAGATCCAGTCTAACCCTAACCCTAATTG
CATAGATTTCACACCGCATGATGAATCTCGAGAGAATCAACCCAAGAAAA
GAGACCAATGAGGAAAGAATGTGTTCCAAGTATCCTGCTCTGCTTTCGCT
GCCTTCTGGCTCAAAGTATCTGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7694:86..6359-

>mRNA_C-tenellus_contig7694.1.1 ID=mRNA_C-tenellus_contig7694.1.1|Name=mRNA_C-tenellus_contig7694.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig7694:86..6359- (Choristocarpus tenellus KU2346)
ATGAGAGGCGTTGATTGGCTCACCAGTGAGGAACAAGTGTGGGACAGCGA
TTACGGTTCCGTCAAGCGTGTCGATTTTGGGGTAATGTCATGTTACCGAG
GTTTTGTCATTAGCTGCATGGAGGATGACTGGCTAACAGACACGCTCTCG
GATGATGAGGTGGGCCTTCCAGAGGGCCACGATCTGGCTATGGATGACGG
GGAGGTAGACTTGGGAGAGTCTATGGACGCCATGGAGAAGGAGGAGAACA
AGTGGACAGAACTAGGCATTGATGCGTTGCAGAGAGAGGGACAAGCACCC
TCATCAAGTAGTTGA
back to top