prot_C-tenellus_contig769.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig769.2.1
Unique Nameprot_C-tenellus_contig769.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length289
Homology
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BLAST of mRNA_C-tenellus_contig769.2.1 vs. uniprot
Match: D7G5I6_ECTSI (RRP7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.020e-47
Identity = 125/302 (41.39%), Postives = 156/302 (51.66%), Query Frame = 0 
Query:    1 MLAKGYHVIPQKVY----GTSPCHRLLYLKEHGGVYKTAGAGGEDEDGDVQGHTFGKGKTLFVGNVDDQGGRLSAQVIEGRLRRIFASCGSVDNVHVGRPARSKSSWAREVTRGGEGCER------------VRVAHISFASTKGVKNALALTYATSVAPDCNIAAGKEVDEDRDS-----------------DGNATCGYAALRQRHRALFPSRKRLQEDVDSRMEEFDRNVAVQESERDKLAAQGEDDDGFVTVTYKKNKRGRMTGGTGARLQQVGEENERVKKKRKGAEGLPDFYRFQV 269
            ++AKGY V+PQ +     GTS   R L+LKEH G++K A +    E G        +G TLFVGNVDDQGGRL  + IE RLRR  + CG + +V V       S+ A   T GG G  R             R AH+ F+STKGV+ ALAL    S A   +                              +G+ TCGYAAL QRHR  FP RK LQE+VD+ M  F+   + + ++R  +    E DDGFVTVTYK+ KRGR +GG G      G      KKKRKGA  L DFYRFQ+
Sbjct:    3 LVAKGYRVVPQALADAGAGTSRGFRHLHLKEHKGLFKAAVSAAGGEGGRETTAASARGTTLFVGNVDDQGGRLCRKTIEARLRRALSPCGKILHVQV-------SAAASAATGGGVGDARGTTVTGRKHTGAARFAHVCFSSTKGVQRALALEQLPSGASTASATXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGDETCGYAALIQRHRRKFPPRKALQEEVDATMLRFEEEESAEIAQRKAMLENPEGDDGFVTVTYKR-KRGRNSGG-GTGNPPDGVVAGGAKKKRKGAGELSDFYRFQM 295
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig769.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I6_ECTSI2.020e-4741.39RRP7 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availablePANTHERPTHR13191:SF0RIBOSOMAL RNA-PROCESSING PROTEIN 7 HOMOLOG A-RELATEDcoord: 54..268
IPR024326Ribosomal RNA-processing protein 7, C-terminal domainPFAMPF12923RRP7coord: 177..269
e-value: 6.7E-15
score: 55.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 32..141
e-value: 1.3E-5
score: 27.1
IPR040446Ribosomal RNA-processing protein 7PANTHERPTHR13191RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATEDcoord: 54..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig769contigC-tenellus_contig769:2789..5737 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig769.2.1mRNA_C-tenellus_contig769.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig769 1447..5819 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig769.2.1 ID=prot_C-tenellus_contig769.2.1|Name=mRNA_C-tenellus_contig769.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=289bp
MLAKGYHVIPQKVYGTSPCHRLLYLKEHGGVYKTAGAGGEDEDGDVQGHT
FGKGKTLFVGNVDDQGGRLSAQVIEGRLRRIFASCGSVDNVHVGRPARSK
SSWAREVTRGGEGCERVRVAHISFASTKGVKNALALTYATSVAPDCNIAA
GKEVDEDRDSDGNATCGYAALRQRHRALFPSRKRLQEDVDSRMEEFDRNV
AVQESERDKLAAQGEDDDGFVTVTYKKNKRGRMTGGTGARLQQVGEENER
VKKKRKGAEGLPDFYRFQVCTGCHYGLTLLTHHCGRNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024326RRP7_C
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040446RRP7