mRNA_C-tenellus_contig766.7.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig766.7.1
Unique NamemRNA_C-tenellus_contig766.7.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: D8LC93_ECTSI (CCHC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC93_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.390e-54
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHIQPLVDGAAVGQVSRKRE 333
            MPATAGRVRMPH NR+SSSSALKMTGIWTNTIGYDPYAAE G    ED  NA+EQAQGLMALAKLSNQGVTEQRGACKKCG VGHLT QCRNHIQP+  GA +  V+ + +
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAGAPMQAVAEESD 111          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A835YWX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.420e-52
Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDG---AQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHIQ----PLVDGAAVGQVSRKREDVEDS 348
            MPATAGRVRMPHNNR+SSSSALKMTGIWTNTIGYDPYAAE G   A    D++NAYEQAQGLMALAKLSN+GVTE RGACKKCGMVGHLT QCRNH+Q    P       G+V    E++E S
Sbjct:    1 MPATAGRVRMPHNNRVSSSSALKMTGIWTNTIGYDPYAAEGGEAAAAAAADAENAYEQAQGLMALAKLSNEGVTESRGACKKCGMVGHLTFQCRNHLQGALIPEPGAKGAGKVGAAGEELESS 123          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 150 bits (380), Expect = 7.820e-45
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPATAGRVRMPHNNRM SS+ALKMTGIW NTIGYDPYAAE   Q  + SQ++YEQA+GLMALAKLSNQG  E RGACKKCGM+GHLT QCRN +
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSNQG-NEVRGACKKCGMLGHLTFQCRNFL 93          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.760e-42
Identity = 71/94 (75.53%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPATAGRVRMPHNNRM SS+ALKMTGIW +TIGYDPYAAE   +  E S+ +YEQA+GLMALAKLSN+   + RGACKKCGMVGHLT QCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAE--GEKKETSETSYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A329RX20_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX20_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.400e-42
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPATAGRVRMPHNNRM SS+ LKMTGIW NTIGYDPYAAE G Q  E S+ +YEQA+GLMALAKLSN+  ++ RGACKKCGMVGHLT QCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAE-GEQQGETSETSYEQAKGLMALAKLSNKS-SDVRGACKKCGMVGHLTFQCRNHL 92          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 147 bits (370), Expect = 1.970e-41
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPA+AGRVRMPHNNRM SS+ALKMTGIWTNTIGYDPYAAE G +  E SQ++YEQAQGLMALAKLSN+   + RGACKKCGM+GHLT QCRN +
Sbjct:    1 MPASAGRVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAE-GEEKKEVSQSSYEQAQGLMALAKLSNKS-NDVRGACKKCGMLGHLTFQCRNFL 92          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A6A3SK00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SK00_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.170e-41
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPATAGRVRMPHNNRM SS+ALKMTGIW NTIGYDPYAAED  Q  E S  ++EQA+GLMALAKLSN+   + RGACKKCGMVGHLT QCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKQ--ETSDTSFEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A0W8C9S2_PHYNI (CAX-interacting protein 4 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9S2_PHYNI)

HSP 1 Score: 146 bits (369), Expect = 3.180e-41
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPATAGRVRMPHNNRM SS+ LKMTGIW NTIGYDPYAAE G +  E S+ +YEQA+GLMALAKLSN+   + RGACKKCGMVGHLT QCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAE-GEKQGETSETSYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 92          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A3M6VM93_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM93_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.940e-41
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHIQPL 291
            MPAT+GRVRMPHNNRM SS+ALKMTGIW NTIGYDPYAAED  +  E ++ +YEQA+GLM LAKLSN+G ++ RGACKKCG VGHLT QCRNH+  L
Sbjct:   15 MPATSGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAED--EKKETTETSYEQAKGLMTLAKLSNKG-SDVRGACKKCGKVGHLTFQCRNHLGEL 108          
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Match: A0A5D6YD99_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD99_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.430e-41
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQNAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHI 282
            MPATAGRVRMPHNNRM SS+AL+MTGIW NTIGYDPYAAED  +  + S++AYEQA+GLMALAKLSN+   + RGACKKCGMVGHLT QCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALQMTGIWKNTIGYDPYAAED--EEKKVSESAYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig766.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC93_ECTSI6.390e-5478.38CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWX5_9STRA1.420e-5272.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4C9D1_PYTIN7.820e-4578.72Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2P4YHG3_9STRA5.760e-4275.53Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A329RX20_9STRA6.400e-4277.66Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A8K1FHX2_PYTOL1.970e-4177.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3SK00_9STRA2.170e-4177.66Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8C9S2_PHYNI3.180e-4176.60CAX-interacting protein 4 n=17 Tax=Phytophthora Ta... [more]
A0A3M6VM93_9STRA3.940e-4173.20CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A5D6YD99_9STRA6.430e-4176.60Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig766contigC-tenellus_contig766:14742..16737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC93
Preferred nameSREK1IP1
PFAMszf-CCHC_3
Model size393
Max annot lvl2759|Eukaryota
KEGG koko:K11493
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons4
Evalue1.05e-54
EggNOG OGsKOG2985@1|root,KOG2985@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005630.1
Descriptionzinc ion binding
Cds size393
COG categoryS
BRITEko00000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790050.4852931-CDS-C-tenellus_contig766:14741..149481680790050.4852931-CDS-C-tenellus_contig766:14741..14948Choristocarpus tenellus KU2346CDSC-tenellus_contig766 14742..14948 +
1680790050.49683-CDS-C-tenellus_contig766:15506..155361680790050.49683-CDS-C-tenellus_contig766:15506..15536Choristocarpus tenellus KU2346CDSC-tenellus_contig766 15507..15536 +
1680790050.5097914-CDS-C-tenellus_contig766:16251..163471680790050.5097914-CDS-C-tenellus_contig766:16251..16347Choristocarpus tenellus KU2346CDSC-tenellus_contig766 16252..16347 +
1680790050.520749-CDS-C-tenellus_contig766:16677..167371680790050.520749-CDS-C-tenellus_contig766:16677..16737Choristocarpus tenellus KU2346CDSC-tenellus_contig766 16678..16737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig766.7.1prot_C-tenellus_contig766.7.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig766 14742..16737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig766.7.1

>prot_C-tenellus_contig766.7.1 ID=prot_C-tenellus_contig766.7.1|Name=mRNA_C-tenellus_contig766.7.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=131bp
MPATAGRVRMPHNNRMSSSSALKMTGIWTNTIGYDPYAAEDGAQVDEDSQ
NAYEQAQGLMALAKLSNQGVTEQRGACKKCGMVGHLTIQCRNHIQPLVDG
AAVGQVSRKREDVEDSSDDDDISDVSSISDS
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mRNA from alignment at C-tenellus_contig766:14742..16737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig766.7.1 ID=mRNA_C-tenellus_contig766.7.1|Name=mRNA_C-tenellus_contig766.7.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1996bp|location=Sequence derived from alignment at C-tenellus_contig766:14742..16737+ (Choristocarpus tenellus KU2346)
ATGCCGGCCACGGCGGGAAGAGTGCGCATGCCGCACAACAATCGCATGAG CAGTAGTAGCGCTCTTAAGATGACAGGTATATGGACGAACACTATCGGCT ATGATCCCTATGCTGCAGAAGATGGGGCTCAAGTTGATGAGGACTCCCAG AACGCCTACGAGCAGGCGCAGGGGCTCATGGCACTCGCAAAGCTGTCCAA CCAGGGAGTGAGTGTCATGGGTGCTATAGAGGAGTTATGTGTGTGGTTTT TTTCTTCGTTGCTATTCACTTTACTCCTCTGAGTAAGGCCCATTTCCAAT GTGGTAGTTCTCTGAGGCGTAACGTTGTATATCCTCGCTGCATGTTTGCA GACTAGCGATACTGCAGCCTTTAGTGAAGGGACGCAAGTGCCTGCTAGAT TTCTGATGATGAAAAATTATGGTGATAACATTGAATTGAGGCTCTTCTAT TCTGTTACGTTGCTCGAGACTTGCCTTACCCACTTTCCACTTTCCTACCT AAGTCACAGCTTATTCTCAAGTTTCATCGTTGCTGTATACGGTAACCCGT CATTTGCTCACTTTTTTTTAGACTTGACTGTTCTTCAGCGAAGCTAAAAT GTTAGAGTGACGTGTTGAATGGATGAACTAGCCCCTCCCTCGCACTCCGC CGGCCAGTAGACACCCTCCTATCAATACCCTTGAAGCTGACCCCCCGTTC CGCCTCTTGGTTTCTTGGACTGGAATATGCTGTTGCAACACCTCTCCCCT ACCTTTCACCGACAGGTCACTGAACAACGTGGTGCCTGCAAAAAGGTGAG ATCTGCGATGTTTATTGGTATTGGCGGAGGTAGGCACAAGAGTCCAAGGG TTGGTCGATAACTATGACCTGTCAGTTCATTTCACATCGCCCATTTGGTG TGTGTCCTGGAGATATTTGGGCCTACTGACAGTTCTTGGTTTGGAAGTAC TACCCATTTTTTTCCAATTTTCCTGCTTATTTTTTAACGTGAAATGGTGT TGTCATTGATTGCATACTTGTTCATTGTCTAGCATACACAGTACCAAGGG TAGTACAAATATTGTGAAGCCATTCTTTCTCTTTAAATTGTGATGTATAA GTGGTGTATTGCCGTTTTCGATAAACAGATGCTAAGGCTTGTTTGATCTT GTAGACCCCAGCACTACTCCGAGACCAGATGTTTATACTGCCAAGGATTG AAGTGTCATATTGTCACTGTTTTTAATAGTTTAGGATTGGATTACATGAA ACATCAAAACTATAATCCTGGATTGTGGATATGCTGGAGCTTGTCCAAAC TTGCAATGTTGGATAGGGGAAAGAGCATGTTATGGGATGCCTACCATAGC GGTACTTGACATGTTCCTGGTTGTGTGTTCCTCAGGACATTGAAACCGCC AATCTAGATATTATCTCACCAACCACAACTGATAGAAATTTCTATTCCTT TCCCCCTCCCCCCCCACATACGCACAACATGCACAATATTACTCTGTCAC ATTACTACAGTGTGGAATGGTTGGCCACCTTACTATCCAGTGCCGAAATC ACATCCAGCCCTTGGTTGATGGGGCAGCTGTGGGCCAGGTGAGCAGGAAA AGGGAGGTAGATTGGATAGTGAGGAAGTCCATTTGTTGTAGTTTTTGATG TTTCTGTTGAAAACTCCAAAGTAGCCTTTCTTGCCTCAACTGAAGTCCTT ATAGTGTTGCTTGAAGTAAGAACAAACAAGACCAATGGCACAATTAGATG GCTAAAATGTAAGCACTGACTAACCGAAGAACCCCCCCCCCCCCCCAACT GCTGTTGGGATTCCTTGCCTTCACTAGACCCAGACTTGAGTTACATCATC CTCAGCGTCACATCCATACTCATGCCCTGAAAATACCATTTCAAATTGTT CCTGTAATGTTGCTTCTTCTGCTATATAAGCAGAAGGATGTTGAAGATTC TTCAGATGATGATGACATCAGCGACGTGTCTTCCATCTCGGACAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig766:14742..16737+

>mRNA_C-tenellus_contig766.7.1 ID=mRNA_C-tenellus_contig766.7.1|Name=mRNA_C-tenellus_contig766.7.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=393bp|location=Sequence derived from alignment at C-tenellus_contig766:14742..16737+ (Choristocarpus tenellus KU2346)
ATGCCGGCCACGGCGGGAAGAGTGCGCATGCCGCACAACAATCGCATGAG
CAGTAGTAGCGCTCTTAAGATGACAGGTATATGGACGAACACTATCGGCT
ATGATCCCTATGCTGCAGAAGATGGGGCTCAAGTTGATGAGGACTCCCAG
AACGCCTACGAGCAGGCGCAGGGGCTCATGGCACTCGCAAAGCTGTCCAA
CCAGGGAGTCACTGAACAACGTGGTGCCTGCAAAAAGTGTGGAATGGTTG
GCCACCTTACTATCCAGTGCCGAAATCACATCCAGCCCTTGGTTGATGGG
GCAGCTGTGGGCCAGGTGAGCAGGAAAAGGGAGGATGTTGAAGATTCTTC
AGATGATGATGACATCAGCGACGTGTCTTCCATCTCGGACAGT
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