mRNA_C-tenellus_contig765.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig765.1.1
Unique NamemRNA_C-tenellus_contig765.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig765.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig765contigC-tenellus_contig765:7189..9382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons3
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.7614841-CDS-C-tenellus_contig765:7188..74571680790049.7614841-CDS-C-tenellus_contig765:7188..7457Choristocarpus tenellus KU2346CDSC-tenellus_contig765 7189..7457 +
1680790049.7719321-CDS-C-tenellus_contig765:8310..84251680790049.7719321-CDS-C-tenellus_contig765:8310..8425Choristocarpus tenellus KU2346CDSC-tenellus_contig765 8311..8425 +
1680790049.7874126-CDS-C-tenellus_contig765:9324..93811680790049.7874126-CDS-C-tenellus_contig765:9324..9381Choristocarpus tenellus KU2346CDSC-tenellus_contig765 9325..9381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig765.1.1prot_C-tenellus_contig765.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig765 7189..9381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig765.1.1

>prot_C-tenellus_contig765.1.1 ID=prot_C-tenellus_contig765.1.1|Name=mRNA_C-tenellus_contig765.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
ETWVQLIKISFGEMQPNLSSLGCQSHLLRVLLGACCLCMVSSQVVYNTPV
TVEAYGQDGEYLSSLWGDTSSWKQSDIHAGFYYHLDAKYYLVGTGPEVME
FWNPFEEDRGGGEPTAVHLKAVMDFVLEERGGADQADTLTVKVINRG
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mRNA from alignment at C-tenellus_contig765:7189..9382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig765.1.1 ID=mRNA_C-tenellus_contig765.1.1|Name=mRNA_C-tenellus_contig765.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2194bp|location=Sequence derived from alignment at C-tenellus_contig765:7189..9382+ (Choristocarpus tenellus KU2346)
GAGACCTGGGTACAGTTAATTAAGATTTCCTTCGGCGAAATGCAGCCAAA
TTTGAGTAGCCTGGGCTGCCAGAGTCATCTTTTACGAGTGTTGTTAGGAG
CATGCTGTTTGTGTATGGTGTCAAGTCAAGTTGTTTATAATACTCCAGTC
ACAGTGGAGGCTTATGGACAGGATGGGGAGTATCTCAGCAGCCTATGGGG
CGACACTTCGAGCTGGAAGCAGTCCGACATTCATGCTGGGTTCTATTATC
ACCTCGACGCCAAATACTAGTGAGTCCGAGGGGGATCACTGTTTGCTCTA
ACCCATTTGAATTTCTTTGTCCGCTGAAGGCGTGGGGAGGTGTAGGGACA
ATAGAGGTACGTTACCCGTGGAGCGCTTCATCTCTAGTGCAGAACTGTCG
ATAAAATGAGGTTTCAAGATTATTGTCAGAGGAAGTGTGGCTCTATAGGG
AATGAGCGAAGGACGGCGGTTCAACCTACTGTTTTGCACCTAGGTGATTT
TCTTCATCAACCGCAACACTAAGCGAGGCAGTAAACGGTGTTTAATACCC
ATCGTTTGTGCCAACAAAAATAATCACCACGTCCTATGATCGATGGTCAT
GTTAGCCATCATGACAAAACAACTGGTCATTATTAACTTTGCGAGGTATC
GAGACACCTCCATGCCCTTTCCCCGACGTTGTTTCAGTTTCGCAACGGTC
GCACGTCCCTTCTCTTGCCGTTGAAAACAATTGTGTCACAGGCGAAGGAT
TTGAAATTGCTCTACTTGCAGCTGGTAAACGAGCGATGAATTATCGATTA
TGATTTTCCCCCTAAATAACCCGGAGGTCTAAGATAAAATGCATAATGCT
CTGCTTCCTCCCTGCAGTCTTGCGTGGATATTTTTGGTGGCAGTATAGCC
CATGGATGGGTGGATTGATACGTTTGTCTCTAGGATCGCTACTGGAGTAG
AAGGCGTGAAGATTTGTTACCAAACAACCCAGATTTTCCCGCTCTATTCA
GAGTGCGCACACATAATTTACTGATCAAGTGTGAGTACCAAATCTTACCC
CTCGCCTTCCATTCGTCACACAGCCCTTCCTCAAAACGTCTATATACACT
CCCTCGTAAACCTTTTCGCAAGTCTTGTGGGTACAGGCCCAGAGGTTATG
GAATTTTGGAATCCATTCGAAGAGGATAGGGGTGGAGGGGAGCCTACGGC
GGTTCACCTTAAGGCAGTCATGGATTTCGTCTTAGAGGTTAGTGCCTTGT
CAAGGTGGATTTCCCACTATTCTTGGAATATTCATAGTCTTGTGACATGT
CGTGAGATTTTTCAGGCTCAATGTATCTGGGGGGGAGACCACTGTTCATT
CGGGGCCCTTTTTTCCATTTCGCGATTTTTGGGTGATTTGGTTGTATGCG
TCTGACGGATAATGTAAGTTAACTTCTCCTGGTCAGAACCCGAAAGGACA
CCCTGGTGTAGACCCCCCCCCTCCACAGATACTTTGGACCTTAATTTTCC
CACATGCCTAGAGAATTTTTTTCCTCCTACGTAAGTAGTACTTTCCTAGA
TATGATGTCAATGTCACTTGGGTCCACAGCTTTACTGTTGGAGTGTGCAA
TTGTTGAAACACCACAACAGCAATTGGTGAAGAAATGAGGGCTGCTTTGT
TACCCTGATTAATAACATTTTGAACCACTTAAGTGTAATGTGCTTTTCAA
GTCTCCAGATTATGATTCAATTTGCATCCAGTGGCGAGGCTCTCCACTTG
CACGATGGTCAAAAGTTGAGATATTTCAGCTACTGATTTGTATCTAATTA
GTGCACAAATGTTGTAATGCACCATCGCATCTCCAACATGTCGCCAACAT
GTCGCCTCAAGTGGATCAAAGCACAGTCCTATGGCGATCCCTCTGGCAAA
GCTTTGTTCTGCTAACTGTTATGCATGGCCAGTAAGCCAGTTAAACAGGT
TGGCACATTGTGCTTGTGTCCTACCATGCTAGGCATTACCTCTTGTTGCA
ATTTGATAGTGTGGTCGATTTGGCTACTACCACTACGCTTGAAAATTCCA
AGCATACTCTGTCTTCAATGAGAAGAAAAATACTCTTGTGGAATGCTTAT
TTTGGAACTCAATGGCACTTCTGTTGCATAATCTAGGAACGGGGAGGGGC
AGATCAAGCAGATACCTTGACCGTGAAGGTGATCAACAGGGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig765:7189..9382+

>mRNA_C-tenellus_contig765.1.1 ID=mRNA_C-tenellus_contig765.1.1|Name=mRNA_C-tenellus_contig765.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig765:7189..9382+ (Choristocarpus tenellus KU2346)
GAGACCTGGGTACAGTTAATTAAGATTTCCTTCGGCGAAATGCAGCCAAA
TTTGAGTAGCCTGGGCTGCCAGAGTCATCTTTTACGAGTGTTGTTAGGAG
CATGCTGTTTGTGTATGGTGTCAAGTCAAGTTGTTTATAATACTCCAGTC
ACAGTGGAGGCTTATGGACAGGATGGGGAGTATCTCAGCAGCCTATGGGG
CGACACTTCGAGCTGGAAGCAGTCCGACATTCATGCTGGGTTCTATTATC
ACCTCGACGCCAAATACTATCTTGTGGGTACAGGCCCAGAGGTTATGGAA
TTTTGGAATCCATTCGAAGAGGATAGGGGTGGAGGGGAGCCTACGGCGGT
TCACCTTAAGGCAGTCATGGATTTCGTCTTAGAGGAACGGGGAGGGGCAG
ATCAAGCAGATACCTTGACCGTGAAGGTGATCAACAGGGGA
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