mRNA_C-tenellus_contig7625.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.070e-32 Identity = 71/225 (31.56%), Postives = 121/225 (53.78%), Query Frame = 1 Query: 1 ANMFHFRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWTPHCKDFPTSIANSTSGLDDPAQ---KVVVIVTQFGIHDITTVERSKIAMDQCLDVTQQLIDFAQQ--------QSIGGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIIS 642 A+ + F+GDST+RRLV+SF ++ TG + AHV H + + V L + W P+C+ + +D+ A + +IVT FG+ D + + A+ C D + L+ AQ ++I P+V +Q NPF+ G E+ ++ +L + E++ +GE + YL+ D SIFN+ C RM S+HF++PVKL++ KMLW ++ +++ Sbjct: 119 ASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNESLHEI--MDNQALDGGRRAIIVTAFGVWDSSHGGGDEAALGVCADAVRSLVQVAQPPPAGSTTAENIAASPPLVFLLQNNPFLPGSEQDLFLRDLHQIQREIVDSGEQEAV--------YLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVA 333
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.030e-19 Identity = 78/296 (26.35%), Postives = 117/296 (39.53%), Query Frame = 1 Query: 1 ANMFHFRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWTPHC---KDFPTSIANSTSGLDDPAQ--KVVVIVTQFGIHD------ITTVERSKIAMDQ------------------CLDVTQQLIDFAQQQ-------------------------------------SIGG---------LRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLE---GN--SSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIISND 648 A+ F F FIGDST RRL +SF +++TG H + H+ +D G L+ + W P C + +A G+ + K VI+T FG+HD + S MD C T QL+ A + S G P+V MQ N + +++EL RR+ Q GE+ E GN + G YL++D+ S+F C R +HF EPVKL++ KMLW ++ ++ + Sbjct: 141 ASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEEL--RRI---QRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERE 431
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 5.620e-8 Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 1 Query: 370 IVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINN-------LEGNSSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTI 636 +V +Q NPF E ++ +L + +V+ R +LL D S+++ C R+DGS+HF EPVKL++ KMLWH++ I Sbjct: 540 LVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEI 635
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 9.300e-8 Identity = 26/99 (26.26%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 355 GGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSSGR--FYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIISN 645 G L+P++ MQ N + G + + ++L + + +V+ E + G +L++++ ++ C R +HF EPVKL++ KMLW ++ ++ N Sbjct: 310 GPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDN 408
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.290e-7 Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 1 Query: 355 GGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSSGR----FYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIISN 645 G L+P++ MQ N + G + + ++L R++ GE EG+ +L++D+ ++ C R +HF EPVKL++ KMLW ++ ++ N Sbjct: 340 GPLQPLLFLMQNNRYPPGSVENAFQEDL--HRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDN 438
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.380e-7 Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1 Query: 16 FRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWTPHCKDFPTSIANSTSGLDDPAQKV----VVIVTQFGIHD 264 F F+GDSTTRRL +SF ++ TG H + H +D G+L + W P C D + I S + + +I+T FG+H+ Sbjct: 88 FHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDARAIIITAFGVHN 174
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 4.590e-7 Identity = 31/106 (29.25%), Postives = 48/106 (45.28%), Query Frame = 1 Query: 373 VLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSS------------------GRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTI 636 V +Q NPF G E ++ +L + +V+ R +LL D S+++ C R+D S+HF EPVKL++ KMLWH++ I Sbjct: 526 VFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLVDI 631 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7625.1.1 >prot_C-tenellus_contig7625.1.1 ID=prot_C-tenellus_contig7625.1.1|Name=mRNA_C-tenellus_contig7625.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=222bp MFHFRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWback to top mRNA from alignment at C-tenellus_contig7625:3858..5237- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7625.1.1 ID=mRNA_C-tenellus_contig7625.1.1|Name=mRNA_C-tenellus_contig7625.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1380bp|location=Sequence derived from alignment at C-tenellus_contig7625:3858..5237- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7625:3858..5237- >mRNA_C-tenellus_contig7625.1.1 ID=mRNA_C-tenellus_contig7625.1.1|Name=mRNA_C-tenellus_contig7625.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=666bp|location=Sequence derived from alignment at C-tenellus_contig7625:3858..5237- (Choristocarpus tenellus KU2346)back to top |