mRNA_C-tenellus_contig7625.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7625.1.1
Unique NamemRNA_C-tenellus_contig7625.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.070e-32
Identity = 71/225 (31.56%), Postives = 121/225 (53.78%), Query Frame = 1
Query:    1 ANMFHFRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWTPHCKDFPTSIANSTSGLDDPAQ---KVVVIVTQFGIHDITTVERSKIAMDQCLDVTQQLIDFAQQ--------QSIGGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIIS 642
            A+ +   F+GDST+RRLV+SF ++ TG + AHV  H + +  V  L   + W P+C+       +    +D+ A    +  +IVT FG+ D +     + A+  C D  + L+  AQ         ++I    P+V  +Q NPF+ G E+  ++ +L   + E++ +GE   +        YL+ D  SIFN+  C RM  S+HF++PVKL++ KMLW ++ +++
Sbjct:  119 ASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNESLHEI--MDNQALDGGRRAIIVTAFGVWDSSHGGGDEAALGVCADAVRSLVQVAQPPPAGSTTAENIAASPPLVFLLQNNPFLPGSEQDLFLRDLHQIQREIVDSGEQEAV--------YLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVA 333          
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.030e-19
Identity = 78/296 (26.35%), Postives = 117/296 (39.53%), Query Frame = 1
Query:    1 ANMFHFRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWTPHC---KDFPTSIANSTSGLDDPAQ--KVVVIVTQFGIHD------ITTVERSKIAMDQ------------------CLDVTQQLIDFAQQQ-------------------------------------SIGG---------LRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLE---GN--SSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIISND 648
            A+ F F FIGDST RRL +SF +++TG    H + H+ +D   G L+  + W P C   +     +A    G+    +  K  VI+T FG+HD      +     S   MD                   C   T QL+  A  +                                     S G            P+V  MQ N +        +++EL  RR+   Q GE+   E   GN  + G  YL++D+ S+F    C R    +HF EPVKL++ KMLW ++ ++  +
Sbjct:  141 ASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEEL--RRI---QRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERE 431          
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-8
Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  370 IVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINN-------LEGNSSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTI 636
            +V  +Q NPF    E   ++ +L   + +V+                     R +LL D  S+++   C R+DGS+HF EPVKL++ KMLWH++ I
Sbjct:  540 LVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEI 635          
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.300e-8
Identity = 26/99 (26.26%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  355 GGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSSGR--FYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIISN 645
            G L+P++  MQ N +  G   + + ++L + + +V+   E +       G    +L++++  ++    C R    +HF EPVKL++ KMLW ++ ++ N
Sbjct:  310 GPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDN 408          
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-7
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  355 GGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSSGR----FYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTIISN 645
            G L+P++  MQ N +  G   + + ++L   R++    GE    EG+         +L++D+  ++    C R    +HF EPVKL++ KMLW ++ ++ N
Sbjct:  340 GPLQPLLFLMQNNRYPPGSVENAFQEDL--HRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDN 438          
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.380e-7
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1
Query:   16 FRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEWTPHCKDFPTSIANSTSGLDDPAQKV----VVIVTQFGIHD 264
            F F+GDSTTRRL +SF ++ TG    H + H  +D   G+L   + W P C D  + I  S   +     +      +I+T FG+H+
Sbjct:   88 FHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDARAIIITAFGVHN 174          
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.590e-7
Identity = 31/106 (29.25%), Postives = 48/106 (45.28%), Query Frame = 1
Query:  373 VLFMQGNPFMEGDERSGWMDELLVRRLEVLQNGEINNLEGNSS------------------GRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQAKMLWHIMTI 636
            V  +Q NPF  G E   ++ +L   + +V+                                R +LL D  S+++   C R+D S+HF EPVKL++ KMLWH++ I
Sbjct:  526 VFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLVDI 631          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7625.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZD7_ECTSI1.070e-3231.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T6_ECTSI2.030e-1926.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGU9_9PHAE5.620e-832.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V6_ECTSI9.300e-826.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6U4_9PHAE1.290e-728.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFC3_9PHAE2.380e-734.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL3_ECTSI4.590e-729.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7625contigC-tenellus_contig7625:3858..5237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790048.4134529-CDS-C-tenellus_contig7625:3857..42531680790048.4134529-CDS-C-tenellus_contig7625:3857..4253Choristocarpus tenellus KU2346CDSC-tenellus_contig7625 3858..4253 -
1680790048.4288828-CDS-C-tenellus_contig7625:4961..52311680790048.4288828-CDS-C-tenellus_contig7625:4961..5231Choristocarpus tenellus KU2346CDSC-tenellus_contig7625 4962..5231 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790048.4385252-UTR-C-tenellus_contig7625:5231..52371680790048.4385252-UTR-C-tenellus_contig7625:5231..5237Choristocarpus tenellus KU2346UTRC-tenellus_contig7625 5232..5237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7625.1.1prot_C-tenellus_contig7625.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7625 3858..5231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7625.1.1

>prot_C-tenellus_contig7625.1.1 ID=prot_C-tenellus_contig7625.1.1|Name=mRNA_C-tenellus_contig7625.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=222bp
MFHFRFIGDSTTRRLVDSFEALYTGIKPAHVLAHTTVDHRVGALDATYEW
TPHCKDFPTSIANSTSGLDDPAQKVVVIVTQFGIHDITTVERSKIAMDQC
LDVTQQLIDFAQQQSIGGLRPIVLFMQGNPFMEGDERSGWMDELLVRRLE
VLQNGEINNLEGNSSGRFYLLEDTASIFNKFECKRMDGSVHFSEPVKLIQ
AKMLWHIMTIISNDLDPGYSQ*
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mRNA from alignment at C-tenellus_contig7625:3858..5237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7625.1.1 ID=mRNA_C-tenellus_contig7625.1.1|Name=mRNA_C-tenellus_contig7625.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1380bp|location=Sequence derived from alignment at C-tenellus_contig7625:3858..5237- (Choristocarpus tenellus KU2346)
GCCAACATGTTCCACTTCCGTTTCATTGGGGACAGCACGACGAGACGTCT GGTCGATAGCTTCGAAGCTCTGTACACGGGAATAAAACCAGCTCATGTGC TCGCGCATACAACTGTAGATCACAGGGTTGGAGCTTTGGATGCCACCTAC GAGTGGACACCACATTGCAAAGATTTTCCTACTTCAATCGCAAATTCCAC AAGTGGTTTGGATGATCCTGCTCAGAAAGTGGTAGTGATCGTGACGCAGT TCGGCATCCATGATATCACTACGGTGGTAAGAGGGTACTGACTCATGTAG GTTTTGTCTAATATATATCTTGCAAGGGCTGAAATCTTTATGTTTTGAAG GGTATTAGTGGACACTTCAATTTGCCCAAGCCACCTATTTTTCCCTGTGG AATACACTCCATTTCTTTGCTTTCTGTTCAACATGCTGTACGAAACTTGA TATTCCCTCTTCCCACACACAGAAATTCACCACCATTCAGCCAAGTATTC TCTCCTTCGGGTGATTGAAAGATCGCTGATGTGTTGTGATTCTGAATTTA TCGCCTTGTCTTATTTAAAGTGTTTTGTGCAAGAGAGTGCCGGAGGGATG TGTTGCATTGTACTTATTCCCTGGTATTGAAAGTCTACATATGACATATT TTGCCCTAGGTCTACGAGGCATTTCTACCAATCTCTACACTTTTCTTTTC TCATGTCACTTTATTCTAAGCTCCAAGATCAGACGATCAGTTTCAATTCT ATGTTGATTAGGGTTATGTGCATTGACCCTGTGGTATCACTTGCTGACAT ATCTGTCTTGTCATAGTACAGAGTTTCCTTGCTCACACTGGATTATTGAG CTCTCCTGGGTGCAACCGACCTTCTCTTCCATTAACATTGACCTGTCTGT TATATTGTTCGATAGTTGGGGTCTGAGAAGGTAGCTAACGAAGGAGGAAT CCAGGCGGGTGATGCGCACGCACGAGTTATTCAGGAACGCTCAAAGATAG CTATGGACCAATGCCTGGACGTCACTCAGCAACTAATCGACTTCGCACAG CAACAATCAATAGGAGGCTTGCGACCCATAGTGTTGTTCATGCAAGGTAA CCCATTTATGGAGGGGGATGAACGGTCTGGGTGGATGGATGAGCTTCTTG TCCGGCGTCTTGAAGTCTTGCAGAATGGAGAGATTAACAACCTTGAAGGA AACTCCTCTGGGAGATTCTACCTCCTGGAAGACACTGCAAGTATATTTAA CAAATTTGAGTGCAAGAGGATGGATGGCTCGGTTCACTTTTCGGAGCCTG TGAAGTTGATTCAAGCGAAGATGCTTTGGCACATCATGACCATAATTTCG AATGATCTGGACCCTGGATATAGTCAATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7625:3858..5237-

>mRNA_C-tenellus_contig7625.1.1 ID=mRNA_C-tenellus_contig7625.1.1|Name=mRNA_C-tenellus_contig7625.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=666bp|location=Sequence derived from alignment at C-tenellus_contig7625:3858..5237- (Choristocarpus tenellus KU2346)
ATGTTCCACTTCCGTTTCATTGGGGACAGCACGACGAGACGTCTGGTCGA
TAGCTTCGAAGCTCTGTACACGGGAATAAAACCAGCTCATGTGCTCGCGC
ATACAACTGTAGATCACAGGGTTGGAGCTTTGGATGCCACCTACGAGTGG
ACACCACATTGCAAAGATTTTCCTACTTCAATCGCAAATTCCACAAGTGG
TTTGGATGATCCTGCTCAGAAAGTGGTAGTGATCGTGACGCAGTTCGGCA
TCCATGATATCACTACGGTGGAACGCTCAAAGATAGCTATGGACCAATGC
CTGGACGTCACTCAGCAACTAATCGACTTCGCACAGCAACAATCAATAGG
AGGCTTGCGACCCATAGTGTTGTTCATGCAAGGTAACCCATTTATGGAGG
GGGATGAACGGTCTGGGTGGATGGATGAGCTTCTTGTCCGGCGTCTTGAA
GTCTTGCAGAATGGAGAGATTAACAACCTTGAAGGAAACTCCTCTGGGAG
ATTCTACCTCCTGGAAGACACTGCAAGTATATTTAACAAATTTGAGTGCA
AGAGGATGGATGGCTCGGTTCACTTTTCGGAGCCTGTGAAGTTGATTCAA
GCGAAGATGCTTTGGCACATCATGACCATAATTTCGAATGATCTGGACCC
TGGATATAGTCAATAA
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