mRNA_C-tenellus_contig7595.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7595.1.1
Unique NamemRNA_C-tenellus_contig7595.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7595.1.1 vs. uniprot
Match: D8LM26_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM26_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 7.550e-71
Identity = 183/460 (39.78%), Postives = 222/460 (48.26%), Query Frame = 1 
Query:    1 RPPPKATAPVYNVSVTRWRFVDANGVPCSHGGPAISDNWTEVSSLADTSSRAATISRSEIDATPLLPTPSHTLPNMSAAVKPWCPSPLDMRGTSGALEGGAHGVGSMNQGPLGVQFELAVHASGQGEMDWWGHGSAVVEHQSPSLNIFPFGGGSGGSMRIRGGGLNGEWRVWRSGSDALTLYDSLALQFGQDFCIRVKRPLLRTVRHSAAEGVAGV------------SGPDPSNLLVQTAPVPHRSDTSHDAKSLGAFLRHLLGQRQFLSTEIREFLGHRQVQHAPLDLPSSHFSSGDSDFTTATSVEDGVSEVNSDVDDRGSKCSGDNPDNSGLSTTKLQLEADDRRLGKNGEVVHSWGRPGGGGSV----EAVAAAALATDYTAWLTRLAVRLRRAVPAGECFVRLRCIDRAITGEQVVRWLVSSCGDCKGNRTEAVRLGSEMVSCGLLLPICAGYE 1332
            R PP+  AP++ V+VTRWR VD +G P +HG  +    WT+ S                                 S+ V+      LD        +G   G       PLGVQFEL V ASG+GEMDWWG G +  E  SP           G +    G G  G+WRVWRS +D L LYD+LAL+FGQ+FC RV RP L+T   S+A G +GV            S PD    L+  +  PHR D   DAK++GAFLR LLG RQFLST + ++L     Q AP  LP+   S+       A S             D GS                                  S G+  GG       +AVA AALA+DY  WL RLAVRLRRA PAGE FVRLRCI  A+TGEQVVRWL+     C G+R  AVRLG +MVS  LL P+CAGY 
Sbjct:  412 RAPPRVAAPIFGVAVTRWRLVDLDGEPLAHGSSSGDVAWTDRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RASSMVESRFNDHLDPSLALDPNDGARVGE------PLGVQFELVVRASGRGEMDWWGRGDSA-EPSSPGAGHIGIHPPHGPAPATPGTGA-GDWRVWRSAADTLALYDALALRFGQEFCGRVSRPKLKTTLPSSAAGASGVLSDDRSGSPPRPSSPDSPPALIVASAAPHRVDMLRDAKTVGAFLRSLLGLRQFLSTAVMDYL----AQPAPASLPADDLSANGGGGAEAGS-------------DHGSDGYFXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFSSGKADGGSGPSAAGQAVAGAALASDYGTWLKRLAVRLRRATPAGEQFVRLRCISPAVTGEQVVRWLMRE-KVCNGDRASAVRLGQDMVSHRLLAPVCAGYH 844
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7595.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM26_ECTSI7.550e-7139.78PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7595contigC-tenellus_contig7595:179..2198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1365
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-14_002640.1
Cds size1365
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790045.7913513-CDS-C-tenellus_contig7595:178..3311680790045.7913513-CDS-C-tenellus_contig7595:178..331Choristocarpus tenellus KU2346CDSC-tenellus_contig7595 179..331 -
1680790045.8017251-CDS-C-tenellus_contig7595:655..10911680790045.8017251-CDS-C-tenellus_contig7595:655..1091Choristocarpus tenellus KU2346CDSC-tenellus_contig7595 656..1091 -
1680790045.8125408-CDS-C-tenellus_contig7595:1422..21981680790045.8125408-CDS-C-tenellus_contig7595:1422..2198Choristocarpus tenellus KU2346CDSC-tenellus_contig7595 1423..2198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7595.1.1prot_C-tenellus_contig7595.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7595 179..2198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7595.1.1

>prot_C-tenellus_contig7595.1.1 ID=prot_C-tenellus_contig7595.1.1|Name=mRNA_C-tenellus_contig7595.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=455bp
RPPPKATAPVYNVSVTRWRFVDANGVPCSHGGPAISDNWTEVSSLADTSS
RAATISRSEIDATPLLPTPSHTLPNMSAAVKPWCPSPLDMRGTSGALEGG
AHGVGSMNQGPLGVQFELAVHASGQGEMDWWGHGSAVVEHQSPSLNIFPF
GGGSGGSMRIRGGGLNGEWRVWRSGSDALTLYDSLALQFGQDFCIRVKRP
LLRTVRHSAAEGVAGVSGPDPSNLLVQTAPVPHRSDTSHDAKSLGAFLRH
LLGQRQFLSTEIREFLGHRQVQHAPLDLPSSHFSSGDSDFTTATSVEDGV
SEVNSDVDDRGSKCSGDNPDNSGLSTTKLQLEADDRRLGKNGEVVHSWGR
PGGGGSVEAVAAAALATDYTAWLTRLAVRLRRAVPAGECFVRLRCIDRAI
TGEQVVRWLVSSCGDCKGNRTEAVRLGSEMVSCGLLLPICAGYEGSNSGG
SNSNG
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mRNA from alignment at C-tenellus_contig7595:179..2198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7595.1.1 ID=mRNA_C-tenellus_contig7595.1.1|Name=mRNA_C-tenellus_contig7595.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2020bp|location=Sequence derived from alignment at C-tenellus_contig7595:179..2198- (Choristocarpus tenellus KU2346)
AGGCCACCTCCCAAGGCAACAGCCCCTGTCTACAATGTATCGGTAACCCG
CTGGAGGTTTGTAGATGCAAATGGAGTCCCCTGCTCTCATGGTGGCCCGG
CCATATCAGACAACTGGACAGAAGTGTCTTCCTTGGCAGACACATCATCA
AGGGCTGCAACCATAAGCAGATCAGAGATTGATGCCACTCCTCTTCTTCC
TACTCCTTCCCATACTCTTCCGAATATGTCAGCAGCAGTGAAGCCATGGT
GCCCCTCGCCCCTTGACATGAGAGGTACCTCTGGTGCCCTGGAGGGTGGA
GCTCATGGGGTTGGTAGCATGAACCAGGGACCCTTGGGTGTTCAGTTTGA
GCTTGCTGTGCATGCAAGTGGGCAAGGAGAGATGGACTGGTGGGGCCATG
GTAGTGCAGTGGTTGAGCACCAGTCTCCTAGTCTAAACATCTTTCCATTT
GGAGGAGGCAGTGGAGGATCAATGAGAATCAGAGGAGGTGGACTGAATGG
CGAATGGCGTGTGTGGCGATCAGGCTCTGACGCTCTTACACTATATGATT
CCCTTGCCCTTCAGTTTGGGCAAGATTTCTGCATACGAGTAAAACGACCT
CTTCTAAGGACAGTCCGCCACTCTGCTGCTGAGGGAGTCGCTGGCGTCAG
TGGCCCTGACCCTTCGAACCTATTGGTACAAACAGCACCAGTTCCCCACC
GCTCTGACACTTCCCATGATGCAAAGTCACTGGGGGCTTTCTTGAGGCAC
CTGTTAGGTCAGCGGCAGTTCCTGAGGTGATCTACCAGTGGGTTACCGCA
TGCCCCTTCTGTCTTGCTCTGTCATGGTGCTTGTGCTCTACTCTTTCCCC
TTTGTAGACTTTTGCATCGTGTTGACTGTTGGAGAACAAACAACCCCTAT
CCTTTCTCACCCGAGGAGAGGTGTCTGTTGATAGACTGTGGATTGTTGTT
GCAGGATTCAATGCTTGTTTTGACTGTGTTCTCGGTGCAGATGCTCACCT
CCCTCCTACCAGCACCTTTGTGTTCCCTCCGTTGAGGCCCTTGGTCTAAA
GTCAAGCTCACACTTTACAACTTTTCTCCTGTATTGTTGTTGACTTGTTT
TTTTCAGCACGGAGATTAGAGAGTTTCTTGGGCACCGTCAGGTTCAGCAC
GCTCCCCTAGACTTACCTTCTTCTCACTTCAGTTCAGGAGATAGTGACTT
TACAACAGCAACCAGTGTGGAGGATGGTGTGAGTGAGGTGAACTCTGATG
TGGACGACAGAGGAAGCAAATGCTCAGGGGACAACCCAGACAACAGTGGG
TTGTCCACTACAAAGTTGCAACTGGAGGCTGATGATAGACGGCTAGGGAA
AAATGGGGAGGTTGTACATAGCTGGGGCCGCCCAGGGGGAGGGGGCAGTG
TGGAAGCGGTTGCTGCTGCAGCATTGGCAACAGACTACACCGCATGGCTT
ACCCGGCTTGCAGTGCGATTGAGGAGGGCAGTCCCTGCAGGAGAGTGTTT
TGTGCGACTCCGTTGCATTGACAGGGCTATCACCGGCGAGCAGGTGATGC
TGTGATGTTGTAGGGTACTTCGTGTGAATGACTCTCTTGGGATGCTGGGG
GGGGGGAGGGGCGATTTTTTTGTTGTACAGTTTTAAGGTGGCAGAGATTG
CATTGAATCAAACTGCCCAAGTGAAGTGTGTGTAGTCATGGCGCTGACAT
AGTACAGATTCCAGACTGAACTCCCTTGGGGATGGGGAGAGCCTGTCAAG
TGCAACTACTAGCATTCTGCTTGTGCTGGTGTGTCTGTTCTGGTTGGTGG
CTCATTAGAACAAGTTTGTTATATTTTTTTGCATGTGTGTGCATCCCCTC
CTCCCTGTCCCTTGCAGGTAGTGCGGTGGCTGGTGTCATCTTGTGGAGAT
TGCAAGGGGAACCGAACCGAGGCTGTGAGGTTGGGTTCAGAAATGGTATC
TTGTGGGTTGCTCTTGCCTATCTGTGCGGGATATGAAGGGAGCAACAGCG
GTGGCAGCAACAGCAACGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7595:179..2198-

>mRNA_C-tenellus_contig7595.1.1 ID=mRNA_C-tenellus_contig7595.1.1|Name=mRNA_C-tenellus_contig7595.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1365bp|location=Sequence derived from alignment at C-tenellus_contig7595:179..2198- (Choristocarpus tenellus KU2346)
AGGCCACCTCCCAAGGCAACAGCCCCTGTCTACAATGTATCGGTAACCCG
CTGGAGGTTTGTAGATGCAAATGGAGTCCCCTGCTCTCATGGTGGCCCGG
CCATATCAGACAACTGGACAGAAGTGTCTTCCTTGGCAGACACATCATCA
AGGGCTGCAACCATAAGCAGATCAGAGATTGATGCCACTCCTCTTCTTCC
TACTCCTTCCCATACTCTTCCGAATATGTCAGCAGCAGTGAAGCCATGGT
GCCCCTCGCCCCTTGACATGAGAGGTACCTCTGGTGCCCTGGAGGGTGGA
GCTCATGGGGTTGGTAGCATGAACCAGGGACCCTTGGGTGTTCAGTTTGA
GCTTGCTGTGCATGCAAGTGGGCAAGGAGAGATGGACTGGTGGGGCCATG
GTAGTGCAGTGGTTGAGCACCAGTCTCCTAGTCTAAACATCTTTCCATTT
GGAGGAGGCAGTGGAGGATCAATGAGAATCAGAGGAGGTGGACTGAATGG
CGAATGGCGTGTGTGGCGATCAGGCTCTGACGCTCTTACACTATATGATT
CCCTTGCCCTTCAGTTTGGGCAAGATTTCTGCATACGAGTAAAACGACCT
CTTCTAAGGACAGTCCGCCACTCTGCTGCTGAGGGAGTCGCTGGCGTCAG
TGGCCCTGACCCTTCGAACCTATTGGTACAAACAGCACCAGTTCCCCACC
GCTCTGACACTTCCCATGATGCAAAGTCACTGGGGGCTTTCTTGAGGCAC
CTGTTAGGTCAGCGGCAGTTCCTGAGCACGGAGATTAGAGAGTTTCTTGG
GCACCGTCAGGTTCAGCACGCTCCCCTAGACTTACCTTCTTCTCACTTCA
GTTCAGGAGATAGTGACTTTACAACAGCAACCAGTGTGGAGGATGGTGTG
AGTGAGGTGAACTCTGATGTGGACGACAGAGGAAGCAAATGCTCAGGGGA
CAACCCAGACAACAGTGGGTTGTCCACTACAAAGTTGCAACTGGAGGCTG
ATGATAGACGGCTAGGGAAAAATGGGGAGGTTGTACATAGCTGGGGCCGC
CCAGGGGGAGGGGGCAGTGTGGAAGCGGTTGCTGCTGCAGCATTGGCAAC
AGACTACACCGCATGGCTTACCCGGCTTGCAGTGCGATTGAGGAGGGCAG
TCCCTGCAGGAGAGTGTTTTGTGCGACTCCGTTGCATTGACAGGGCTATC
ACCGGCGAGCAGGTAGTGCGGTGGCTGGTGTCATCTTGTGGAGATTGCAA
GGGGAACCGAACCGAGGCTGTGAGGTTGGGTTCAGAAATGGTATCTTGTG
GGTTGCTCTTGCCTATCTGTGCGGGATATGAAGGGAGCAACAGCGGTGGC
AGCAACAGCAACGGC
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