prot_C-tenellus_contig755.5.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig755.5.1
Unique Nameprot_C-tenellus_contig755.5.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length150
Homology
[Close]
BLAST of mRNA_C-tenellus_contig755.5.1 vs. uniprot
Match: A0A835ZK67_9STRA (SKA2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK67_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.330e-18
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 0 
Query:    1 MEEHLQLLELDFKSVANDLDFAACRLDTKMAVRGRDETTVPDVHNLLVRIEELQKEVPLLEESMMDVIRRVKAVESTLSTSAVSTHDSMLRVYSRLGCEPDGDWVAEAKSVKAWMQR 117
            M+  +Q +EL+FK +AN+L +A+ RLDT MA        VPDV+ L+ R+  LQ+    LEE       R +A  + LS   +S+ D M + Y+RLGCE DG+W A A +V+  +Q+
Sbjct:    1 MDSAIQNVELEFKRIANNLQYASHRLDTAMAKAAASGGGVPDVYRLVRRLRALQRTAAQLEEQSQKERARSEACAAELSALLLSSADGMAKAYARLGCEVDGEWAAAADAVRMQLQQ 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig755.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZK67_9STRA5.330e-1840.17SKA2 domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..70
NoneNo IPR availableGENE3D6.10.250.1380coord: 1..118
e-value: 2.1E-6
score: 29.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..150
IPR042091Ska2, N-terminalPFAMPF16740SKA2coord: 4..101
e-value: 7.4E-8
score: 32.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig755contigC-tenellus_contig755:13093..15616 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig755.5.1mRNA_C-tenellus_contig755.5.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig755 12973..15616 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig755.5.1 ID=prot_C-tenellus_contig755.5.1|Name=mRNA_C-tenellus_contig755.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=150bp
MEEHLQLLELDFKSVANDLDFAACRLDTKMAVRGRDETTVPDVHNLLVRI
EELQKEVPLLEESMMDVIRRVKAVESTLSTSAVSTHDSMLRVYSRLGCEP
DGDWVAEAKSVKAWMQRTGSSKDGGGGGCGGDRGEGSVVVPGGGGEEEEE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042091Ska2_N