mRNA_C-tenellus_contig7523.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7523.2.1
Unique NamemRNA_C-tenellus_contig7523.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7523.2.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.060e-19
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:   19 ATSDAYLKTKYELVCKERDGLRQSLSVLERDNEELRKSVYELSYMLSMQGNSGNAALSLCGAGSPTAPSPNTTTAAVATG---QAPFEPRLGIGSHHHLDSLSLMSNGGIGGGM------VPRVLVPEAKL 384
            ++S+++ + +YE VCKERD L+ ++   ERD +EL+KSVYELSYMLSMQG++G+A  S   A  P A  P  +T    TG   +  F+PR+G+ + H LD+L LM+ GGIG G         RVLV EAKL
Sbjct:    8 SSSESFFRAQYESVCKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLA--PAAARPGASTGGNVTGPPSREVFDPRVGLATAH-LDALGLMNGGGIGVGSSGSGFAAGRVLVAEAKL 135
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BLAST of mRNA_C-tenellus_contig7523.2.1 vs. uniprot
Match: D7FIJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.350e-17
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = 1 
Query:   19 ATSDAYLKTKYELVCKERDGLRQSLSVLERDNEELRKSVYELSYMLSMQGNSGNA----ALSLCGAGSPTAPSPNTTTAAVATGQAPFEPRLGIGSHHHLDSLSLMSNGGI----GGGMVP--RVLVPEAKL 384
            ++S+++ + +YE VCKERD L+ ++   ERD +EL+KSVYELSYMLSMQG++G+A    +L         A   N T       +  F+PR+GI + H LDSL LM+ GGI     G  +P  R+LV EAKL
Sbjct:    8 SSSESFFRAQYESVCKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLXXXXXXXXAATGGNVTGP---PSRKVFDPRVGIATAH-LDSLGLMNGGGIRVGSNGIRIPAGRILVAEAKL 135
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7523.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE1.060e-1947.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIJ7_ECTSI2.350e-1744.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7523contigC-tenellus_contig7523:3751..5117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog653948.CCA19101
PFAMsWD40
Model size384
Max annot lvl2759|Eukaryota
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000623
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000010.1
DescriptionWD repeat-containing protein
Cds size384
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.4813557-CDS-C-tenellus_contig7523:3750..38211680790042.4813557-CDS-C-tenellus_contig7523:3750..3821Choristocarpus tenellus KU2346CDSC-tenellus_contig7523 3751..3821 +
1680790042.4941547-CDS-C-tenellus_contig7523:4198..42921680790042.4941547-CDS-C-tenellus_contig7523:4198..4292Choristocarpus tenellus KU2346CDSC-tenellus_contig7523 4199..4292 +
1680790042.5095296-CDS-C-tenellus_contig7523:4497..45641680790042.5095296-CDS-C-tenellus_contig7523:4497..4564Choristocarpus tenellus KU2346CDSC-tenellus_contig7523 4498..4564 +
1680790042.5222871-CDS-C-tenellus_contig7523:4965..51171680790042.5222871-CDS-C-tenellus_contig7523:4965..5117Choristocarpus tenellus KU2346CDSC-tenellus_contig7523 4966..5117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7523.2.1prot_C-tenellus_contig7523.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7523 3751..5117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7523.2.1

>prot_C-tenellus_contig7523.2.1 ID=prot_C-tenellus_contig7523.2.1|Name=mRNA_C-tenellus_contig7523.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=128bp
MPAKPKATSDAYLKTKYELVCKERDGLRQSLSVLERDNEELRKSVYELSY
MLSMQGNSGNAALSLCGAGSPTAPSPNTTTAAVATGQAPFEPRLGIGSHH
HLDSLSLMSNGGIGGGMVPRVLVPEAKL
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mRNA from alignment at C-tenellus_contig7523:3751..5117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7523.2.1 ID=mRNA_C-tenellus_contig7523.2.1|Name=mRNA_C-tenellus_contig7523.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1367bp|location=Sequence derived from alignment at C-tenellus_contig7523:3751..5117+ (Choristocarpus tenellus KU2346)
ATGCCGGCTAAACCTAAAGCAACCTCTGACGCTTATCTCAAGACGAAGTA
CGAGCTTGTGTGCAAGGAGAGGTCAGAGATGTGTTTAGCACGTAATAAGT
TTCGTTTGTGTTGCCCTTGGCCATACTTCTGTAGGGTCCAAGCCCCCTGC
ACGCACCAAGAAGTCTATCGTATTTTATCGGTGGGATCCCAAATCACCAA
GACCTCCATACTATAGAGGGCTTTGCCCTGGTGGAACAGTCTTATCTCAA
ATGGTTGACGACCGGCATTGCCTTGTTTCGAATATCAGAGAGTGCCACTT
CACCGTGTTGCCCTTTGGTCCTTGCTGGCTTGCCAGTGGTATGGGACCCC
ACCTTGGTCACGAAGTAAGGCCCTACTTCTAGTAAGTTCTCTTGAGTCAC
CCAAGCTGTTCTTCCACTGGACGTACTGATCTTGTCACACCCATGCAGGG
ATGGATTGCGACAGTCTCTCTCGGTGTTAGAACGGGACAATGAGGAACTT
CGAAAAAGCGTTTACGAGTTGTCCTACATGCTCTCCATGCAGGTCTGGAA
ACCCTTTCCTTTCAGAAGCAGACAATCTTTCCTTGAAGACGTGTATTCGG
TACGATGTACTATACATTGCCACACCTCAGCTGCTCGTTGTTAAGGAGAG
TCACCTTGGTTGCTAGCAACCTGACTGACCTTGTGAGACACCCCAAATTG
CTGCTCCTATTTCTTGTACTGGTGTTGTTGTGTGTGTCACATCCAAGGGA
AACTCAGGGAATGCTGCATTGTCATTGTGTGGCGCTGGGAGCCCTACCGC
TCCTTCCCCTAATAGTAAGCTACTCGTTGGGTAGATGATCAACTGGATGA
GGTGAAATGTAATGCTGATTGGGGCAGGATAGTATGAGTGGAGGCAGCCC
CACATTGCACTTGATTGTGTGGTCTTTCTTGATTTAGTTTTTGTTTTTCT
GAGTCTTTCTTGCTCTCCACCTCTGAAAGAAAACATCCCTCCTCCGCATT
CCCCCGCCCTTTCCCACCCATCAGGCATGTCCAGTTGTCGTTAATTGGTG
TGTTTGAGGACAACATTGAAGAATGTTATCATTGCATCCACCACAGCCCG
ATACTAACATGCCTCAATACCTAATTAATGTGCTCGTGCTCTCCTCCCCC
AACCTCTACCTATGCATGGACTGGTGGGCCGGTTGATAACACAGGAGGTG
GGCGTACCTCTGGAGCAACAACAGCAGCAGTGGCAACAGGGCAAGCACCG
TTTGAACCAAGATTGGGGATAGGGAGCCACCATCACCTGGACTCACTCAG
CCTTATGAGTAATGGCGGTATAGGAGGTGGTATGGTACCACGCGTGCTTG
TGCCAGAAGCAAAGCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7523:3751..5117+

>mRNA_C-tenellus_contig7523.2.1 ID=mRNA_C-tenellus_contig7523.2.1|Name=mRNA_C-tenellus_contig7523.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=384bp|location=Sequence derived from alignment at C-tenellus_contig7523:3751..5117+ (Choristocarpus tenellus KU2346)
ATGCCGGCTAAACCTAAAGCAACCTCTGACGCTTATCTCAAGACGAAGTA
CGAGCTTGTGTGCAAGGAGAGGGATGGATTGCGACAGTCTCTCTCGGTGT
TAGAACGGGACAATGAGGAACTTCGAAAAAGCGTTTACGAGTTGTCCTAC
ATGCTCTCCATGCAGGGAAACTCAGGGAATGCTGCATTGTCATTGTGTGG
CGCTGGGAGCCCTACCGCTCCTTCCCCTAATACAACAACAGCAGCAGTGG
CAACAGGGCAAGCACCGTTTGAACCAAGATTGGGGATAGGGAGCCACCAT
CACCTGGACTCACTCAGCCTTATGAGTAATGGCGGTATAGGAGGTGGTAT
GGTACCACGCGTGCTTGTGCCAGAAGCAAAGCTG
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