prot_C-tenellus_contig7500.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7500.1.1
Unique Nameprot_C-tenellus_contig7500.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length223
Homology
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BLAST of mRNA_C-tenellus_contig7500.1.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.700e-9
Identity = 77/221 (34.84%), Postives = 101/221 (45.70%), Query Frame = 0 
Query:    4 TGRDAPWDGTELARRVLMREGEALVQRYMEVDGEMCLRQQSRGESSDSSSDGGIGHSDVEEGNKEGGDGDESISGETNNLPQGSKERKDSGGRTQPM--LVLGALLQPP-STPLQRNGLPSTPLSVTSLGTT---AGGTRGRIGTGVGTM------MDLALTKREEVRHLVPAMLLLLKGLLLL-PSERFAAEAPWVYPILVDLVGARDPTVRGLVRELLR 211
            +G  A WDGT LA   L REG  ++ RY E DGE  +++ S  +   SS+D     S V                 ++  P    + +       P    V  +   P  ST  + +   STP S+ S GT        R     G+G         +L  +   EVRHL PA+LLLL+GLLLL P+E F  EA W+ P L DLV  R   VR +VRELLR
Sbjct: 1084 SGGAAGWDGTTLALEFLRREGGNILVRYFEADGE--VQRASLEDHMWSSADDTAAASAVPS---------------SSFAPPSPSQHRGGFSVESPSRHTVTSSSFSPTASTGSRAHQQASTPRSMGSGGTRRPPGAAPRPPAAGGLGPQHQQREPANLVASTEAEVRHLTPAVLLLLRGLLLLQPAEAFDREAGWLCPRLADLVVVRSLEVRAVVRELLR 1287
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BLAST of mRNA_C-tenellus_contig7500.1.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.420e-7
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0 
Query:  148 MDLALTKREEVRHLVPAMLLLLKGLLLL-PSERFAAEAPWVYPILVDLVGARDPTVRGLVRELL 210
            ++L  +   EVRHL  A+LLLL+GLLLL P+E F  EA W+ P L DLV  R   VR +VRELL
Sbjct: 2260 VNLVASAEAEVRHLTSAVLLLLRGLLLLQPAEAFDREAGWLCPRLADLVVVRSLEVRAVVRELL 2323
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7500.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ76_9PHAE1.700e-934.84DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LFA1_ECTSI5.420e-754.69BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7500contigC-tenellus_contig7500:77..1269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7500.1.1mRNA_C-tenellus_contig7500.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7500 65..3181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7500.1.1 ID=prot_C-tenellus_contig7500.1.1|Name=mRNA_C-tenellus_contig7500.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=223bp
MKATGRDAPWDGTELARRVLMREGEALVQRYMEVDGEMCLRQQSRGESSD
SSSDGGIGHSDVEEGNKEGGDGDESISGETNNLPQGSKERKDSGGRTQPM
LVLGALLQPPSTPLQRNGLPSTPLSVTSLGTTAGGTRGRIGTGVGTMMDL
ALTKREEVRHLVPAMLLLLKGLLLLPSERFAAEAPWVYPILVDLVGARDP
TVRGLVRELLRTKVTFLLPFMM*
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